RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CC2D2AQ9P2K1 1620 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 ANKRD36CQ5JPF3 1778 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 A0A1B0GUT8 65 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 NWD1Q149M9 1564 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 ETDBQ3ZM63 59 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 PKD1L3Q7Z443 1732 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 DOT1LQ8TEK3 1739 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 MAST1Q9Y2H9 1570 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.85□□□□□ -2.55
VPS50-216ENST00000484954 ABCC2Q92887 1545 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 ANKRD36BQ8N2N9 1353 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 EIF4G3O43432 1585 aaKnown RBP-0.86□□□□□ -2.55
VPS50-216ENST00000484954 RPS27P42677 84 aaKnown RBP-0.86□□□□□ -2.55
VPS50-216ENST00000484954 RPS27LQ71UM5 84 aaKnown RBP-0.86□□□□□ -2.55
VPS50-216ENST00000484954 C14orf144Q96I85 54 aa-0.86□□□□□ -2.55
VPS50-216ENST00000484954 POLR1AO95602 1720 aaPredicted RBP-0.86□□□□□ -2.55
VPS50-216ENST00000484954 ZFYVE16Q7Z3T8 1539 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 ACYP1P07311 99 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 ZNF720Q7Z2F6 126 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 PMCHL2Q9BQD1 86 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 LY75O60449 1722 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 SUPT6HQ7KZ85 1726 aaKnown RBP-0.87□□□□□ -2.55
VPS50-216ENST00000484954 ABCA3Q99758 1704 aa-0.87□□□□□ -2.55
VPS50-216ENST00000484954 PARP4Q9UKK3 1724 aaKnown RBP-0.87□□□□□ -2.55
VPS50-216ENST00000484954 ITSN2Q9NZM3 1697 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 NEXMIFQ5QGS0 1516 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 LINC01546A6NGU7 62 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 HMGN2P05204 90 aaKnown RBP-0.88□□□□□ -2.55
VPS50-216ENST00000484954 CRIP1P50238 77 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 SARNPP82979 210 aaKnown RBP-0.88□□□□□ -2.55
VPS50-216ENST00000484954 PLGLAQ15195 96 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 KRTAP19-2Q3LHN2 52 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 DIP2BQ9P265 1576 aa-0.88□□□□□ -2.55
VPS50-216ENST00000484954 UQCRHLA0A096LP55 91 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 M0QZ58 72 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 ATOX1O00244 68 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 CYB5AP00167 134 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 S100PP25815 95 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 S100A10P60903 97 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 COL5A1-AS1Q5SY13 56 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 PLIN4Q96Q06 1357 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 NCOA2Q15596 1464 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 LTN1O94822 1766 aa-0.89□□□□□ -2.55
VPS50-216ENST00000484954 ATP10BO94823 1461 aa-0.9□□□□□ -2.55
VPS50-216ENST00000484954 DEFB131BA0A096LNP1 70 aa-0.9□□□□□ -2.55
VPS50-216ENST00000484954 NDUFA4O00483 81 aa-0.9□□□□□ -2.55
VPS50-216ENST00000484954 FAUP35544 74 aaKnown RBP-0.9□□□□□ -2.55
VPS50-216ENST00000484954 IFI27P40305 119 aaPredicted RBP-0.9□□□□□ -2.55
VPS50-216ENST00000484954 NCBP2-AS2Q69YL0 99 aa-0.9□□□□□ -2.55
VPS50-216ENST00000484954 NOP10Q9NPE3 64 aaKnown RBP-0.9□□□□□ -2.55
VPS50-216ENST00000484954 KIF1AQ12756 1690 aa-0.91□□□□□ -2.55
VPS50-216ENST00000484954 ZC3H13Q5T200 1668 aaKnown RBP-0.91□□□□□ -2.55
VPS50-216ENST00000484954 MYMXA0A1B0GTQ4 84 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 A8MTW9 85 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 UMAD1C9J7I0 102 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 H3BUA1 57 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 NDUFB1O75438 58 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 SPART-AS1P0CW21 52 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 BVES-AS1Q5T3Y7 98 aa-0.91□□□□□ -2.56
VPS50-216ENST00000484954 EPRSP07814 1512 aaKnown RBP-0.91□□□□□ -2.56
VPS50-216ENST00000484954 MED14O60244 1454 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 TJP1Q07157 1748 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 ITSN1Q15811 1721 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 DDX60LQ5H9U9 1706 aaKnown RBP-0.92□□□□□ -2.56
VPS50-216ENST00000484954 UBR1Q8IWV7 1749 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 CCNB3Q8WWL7 1395 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 ARFGEF2Q9Y6D5 1785 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 KIAA0586Q9BVV6 1533 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 ATP6V1G2-DDX39BF2Z307 99 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 M0QY20 66 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 SFTA3P0C7M3 94 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 HMGA1P17096 107 aaKnown RBP-0.92□□□□□ -2.56
VPS50-216ENST00000484954 RPS29P62273 56 aaKnown RBP-0.92□□□□□ -2.56
VPS50-216ENST00000484954 MINOS1Q5TGZ0 78 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 C20orf78Q9BR46 151 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 DPY30Q9C005 99 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 CLTCQ00610 1675 aaKnown RBP-0.92□□□□□ -2.56
VPS50-216ENST00000484954 FANCAO15360 1455 aa-0.92□□□□□ -2.56
VPS50-216ENST00000484954 LINC00032P0C843 101 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 KCNQ1DNQ9H478 68 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 RABAC1Q9UI14 185 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 LRRIQ1Q96JM4 1722 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 CCDC88BA6NC98 1476 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 TMEM131LA2VDJ0 1609 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 A0A1B0GUL6 1792 aa-0.93□□□□□ -2.56
VPS50-216ENST00000484954 PLCH1Q4KWH8 1693 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.94□□□□□ -2.56
VPS50-216ENST00000484954 NRAPQ86VF7 1730 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 CEBPZOSA8MTT3 80 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 FCER1GP30273 86 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 RBP2P50120 134 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 SMIM11AP58511 58 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 PEA15Q15121 130 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 NREPQ16612 68 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 DEFB136Q30KP8 78 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 NCMAPQ5T1S8 102 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 ACBD7Q8N6N7 88 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 LEAP2Q969E1 77 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 C6orf48Q9UBA6 75 aa-0.94□□□□□ -2.56
VPS50-216ENST00000484954 RNF17Q9BXT8 1623 aaKnown RBP-0.94□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms