RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 PRRC2CQ9Y520 2896 aaKnown RBP0.5□□□□□ -2.33
PTCD3-214ENST00000483925 LYSTQ99698 3801 aa0.49□□□□□ -2.33
PTCD3-214ENST00000483925 H3BNG1 76 aa0.49□□□□□ -2.33
PTCD3-214ENST00000483925 H3BSH0 61 aa0.48□□□□□ -2.33
PTCD3-214ENST00000483925 NDUFA1O15239 70 aa0.48□□□□□ -2.33
PTCD3-214ENST00000483925 DEFB131AP59861 70 aa0.48□□□□□ -2.33
PTCD3-214ENST00000483925 ARHGAP5-AS1Q96IT6 56 aa0.48□□□□□ -2.33
PTCD3-214ENST00000483925 MAP1BP46821 2468 aaKnown RBP0.48□□□□□ -2.33
PTCD3-214ENST00000483925 SETXQ7Z333 2677 aaKnown RBP0.48□□□□□ -2.33
PTCD3-214ENST00000483925 UBR5O95071 2799 aaPredicted RBP0.47□□□□□ -2.33
PTCD3-214ENST00000483925 ACANP16112 2415 aa0.47□□□□□ -2.33
PTCD3-214ENST00000483925 HRNRQ86YZ3 2850 aaPredicted RBP0.47□□□□□ -2.33
PTCD3-214ENST00000483925 M0QY20 66 aa0.47□□□□□ -2.33
PTCD3-214ENST00000483925 IGSF10Q6WRI0 2623 aa0.46□□□□□ -2.34
PTCD3-214ENST00000483925 PHGR1C9JFL3 82 aa0.46□□□□□ -2.34
PTCD3-214ENST00000483925 PRCDQ00LT1 54 aa0.46□□□□□ -2.34
PTCD3-214ENST00000483925 VPS13BQ7Z7G8 4022 aa0.46□□□□□ -2.34
PTCD3-214ENST00000483925 APC2O95996 2303 aa0.46□□□□□ -2.34
PTCD3-214ENST00000483925 GPR98Q8WXG9 6306 aa0.45□□□□□ -2.34
PTCD3-214ENST00000483925 HTN1P15515 57 aa0.45□□□□□ -2.34
PTCD3-214ENST00000483925 TMEM167AQ8TBQ9 72 aa0.45□□□□□ -2.34
PTCD3-214ENST00000483925 RHPN1-AS1Q9BWJ2 59 aa0.45□□□□□ -2.34
PTCD3-214ENST00000483925 HECTD4Q9Y4D8 3996 aa0.45□□□□□ -2.34
PTCD3-214ENST00000483925 CEP290O15078 2479 aa0.44□□□□□ -2.34
PTCD3-214ENST00000483925 TNRC18O15417 2968 aaPredicted RBP0.44□□□□□ -2.34
PTCD3-214ENST00000483925 WNK1Q9H4A3 2382 aa0.44□□□□□ -2.34
PTCD3-214ENST00000483925 HSPG2P98160 4391 aa0.44□□□□□ -2.34
PTCD3-214ENST00000483925 MMP24-AS1A0A0U1RRL7 71 aa0.44□□□□□ -2.34
PTCD3-214ENST00000483925 RPL39LQ96EH5 51 aaKnown RBP0.44□□□□□ -2.34
PTCD3-214ENST00000483925 PKD1L2Q7Z442 2459 aa0.44□□□□□ -2.34
PTCD3-214ENST00000483925 A8MTW9 85 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 DEFB108AA8MXU0 73 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 H3BUX3 64 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 CD52P31358 61 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 POLR2KP53803 58 aaKnown RBP0.43□□□□□ -2.34
PTCD3-214ENST00000483925 RPL39P62891 51 aaKnown RBP0.43□□□□□ -2.34
PTCD3-214ENST00000483925 LINC01590Q5TEZ4 76 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 LEAP2Q969E1 77 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 Q9Y3F1 56 aa0.43□□□□□ -2.34
PTCD3-214ENST00000483925 CELSR1Q9NYQ6 3014 aa0.42□□□□□ -2.34
PTCD3-214ENST00000483925 SPART-AS1P0CW21 52 aa0.42□□□□□ -2.34
PTCD3-214ENST00000483925 RPL39P5Q59GN2 51 aa0.42□□□□□ -2.34
PTCD3-214ENST00000483925 CLPSL2Q6UWE3 100 aa0.42□□□□□ -2.34
PTCD3-214ENST00000483925 APELAP0DMC3 54 aa0.41□□□□□ -2.34
PTCD3-214ENST00000483925 HTN3P15516 51 aa0.41□□□□□ -2.34
PTCD3-214ENST00000483925 PKD1P98161 4303 aa0.41□□□□□ -2.34
PTCD3-214ENST00000483925 MUC5ACP98088 5654 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 STATHP02808 62 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 SPRR2AP35326 72 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB133Q30KQ1 61 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB110Q30KQ9 67 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB108BQ8NET1 73 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB104AQ8WTQ1 72 aa0.4□□□□□ -2.35
PTCD3-214ENST00000483925 NBASA2RRP1 2371 aa0.39□□□□□ -2.35
PTCD3-214ENST00000483925 A0A096LNI7 61 aa0.39□□□□□ -2.35
PTCD3-214ENST00000483925 K7EIM0 57 aa0.39□□□□□ -2.35
PTCD3-214ENST00000483925 TNP1P09430 55 aa0.39□□□□□ -2.35
PTCD3-214ENST00000483925 NSD1Q96L73 2696 aaPredicted RBP0.39□□□□□ -2.35
PTCD3-214ENST00000483925 A0A096LPF7 62 aa0.38□□□□□ -2.35
PTCD3-214ENST00000483925 M0QZ58 72 aa0.38□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB136Q30KP8 78 aa0.38□□□□□ -2.35
PTCD3-214ENST00000483925 COX14Q96I36 57 aa0.38□□□□□ -2.35
PTCD3-214ENST00000483925 FLNBO75369 2602 aaKnown RBP0.38□□□□□ -2.35
PTCD3-214ENST00000483925 PKHD1P08F94 4074 aa0.38□□□□□ -2.35
PTCD3-214ENST00000483925 DNAH3Q8TD57 4116 aa0.37□□□□□ -2.35
PTCD3-214ENST00000483925 LINC01556Q5JQF7 62 aa0.37□□□□□ -2.35
PTCD3-214ENST00000483925 MAST4O15021 2626 aa0.37□□□□□ -2.35
PTCD3-214ENST00000483925 DEFB124Q8NES8 71 aa0.36□□□□□ -2.35
PTCD3-214ENST00000483925 SACSQ9NZJ4 4579 aa0.36□□□□□ -2.35
PTCD3-214ENST00000483925 HMCN2Q8NDA2 5059 aa0.36□□□□□ -2.35
PTCD3-214ENST00000483925 LRP1BQ9NZR2 4599 aa0.36□□□□□ -2.35
PTCD3-214ENST00000483925 DMBT1Q9UGM3 2413 aaPredicted RBP0.35□□□□□ -2.35
PTCD3-214ENST00000483925 SPTBN4Q9H254 2564 aa0.35□□□□□ -2.35
PTCD3-214ENST00000483925 RPS29P62273 56 aaKnown RBP0.34□□□□□ -2.36
PTCD3-214ENST00000483925 CUBNO60494 3623 aa0.33□□□□□ -2.36
PTCD3-214ENST00000483925 DEFB1P60022 68 aa0.33□□□□□ -2.36
PTCD3-214ENST00000483925 KRTAP6-2Q3LI66 62 aa0.33□□□□□ -2.36
PTCD3-214ENST00000483925 FLNCQ14315 2725 aa0.33□□□□□ -2.36
PTCD3-214ENST00000483925 DNAH9Q9NYC9 4486 aa0.32□□□□□ -2.36
PTCD3-214ENST00000483925 NF1P21359 2839 aa0.32□□□□□ -2.36
PTCD3-214ENST00000483925 DEFB4AO15263 64 aa0.32□□□□□ -2.36
PTCD3-214ENST00000483925 ANK3Q12955 4377 aaKnown RBP0.32□□□□□ -2.36
PTCD3-214ENST00000483925 FLGP20930 4061 aaPredicted RBP0.31□□□□□ -2.36
PTCD3-214ENST00000483925 DCHS2Q6V1P9 2916 aa0.31□□□□□ -2.36
PTCD3-214ENST00000483925 PKHD1L1Q86WI1 4243 aa0.3□□□□□ -2.36
PTCD3-214ENST00000483925 ACACAQ13085 2346 aa0.3□□□□□ -2.36
PTCD3-214ENST00000483925 MT1AP04731 61 aa0.29□□□□□ -2.36
PTCD3-214ENST00000483925 COL6A3P12111 3177 aa0.29□□□□□ -2.36
PTCD3-214ENST00000483925 SONP18583 2426 aaKnown RBP0.28□□□□□ -2.36
PTCD3-214ENST00000483925 CEP250Q9BV73 2442 aa0.28□□□□□ -2.36
PTCD3-214ENST00000483925 LRP2P98164 4655 aa0.28□□□□□ -2.36
PTCD3-214ENST00000483925 STAB1Q9NY15 2570 aa0.28□□□□□ -2.37
PTCD3-214ENST00000483925 MTORP42345 2549 aa0.27□□□□□ -2.37
PTCD3-214ENST00000483925 ANKHD1Q8IWZ3 2542 aaKnown RBP0.27□□□□□ -2.37
PTCD3-214ENST00000483925 FLNAP21333 2647 aaKnown RBP0.27□□□□□ -2.37
PTCD3-214ENST00000483925 SPRR2EP22531 72 aa0.27□□□□□ -2.37
PTCD3-214ENST00000483925 FAM186AA6NE01 2351 aa0.27□□□□□ -2.37
PTCD3-214ENST00000483925 CCDC168Q8NDH2 2452 aa0.27□□□□□ -2.37
PTCD3-214ENST00000483925 GCN1Q92616 2671 aaKnown RBP0.27□□□□□ -2.37
PTCD3-214ENST00000483925 SPG11Q96JI7 2443 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms