RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 LINC01558Q9Y6Z2 57 aa3.03□□□□□ -1.92
USP40-213ENST00000483216 C3orf84H3BNL1 204 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 IGLV1-51P01701 117 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 SPART-AS1P0CW21 52 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 DEFB130BP0DP73 79 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 DEFB130AP0DP74 79 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 UNQ6190/PRO20217Q6UXQ8 127 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 Q6ZRX8 168 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 SORL1Q92673 2214 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 C2CD3Q4AC94 2353 aa3.02□□□□□ -1.93
USP40-213ENST00000483216 MXRA5Q9NR99 2828 aa3.01□□□□□ -1.93
USP40-213ENST00000483216 SVEP1Q4LDE5 3571 aa3.01□□□□□ -1.93
USP40-213ENST00000483216 H0Y9P7 68 aa3.01□□□□□ -1.93
USP40-213ENST00000483216 RPL37AP61513 92 aaKnown RBP3.01□□□□□ -1.93
USP40-213ENST00000483216 DEFB131BA0A096LNP1 70 aa3□□□□□ -1.93
USP40-213ENST00000483216 A6NN06 94 aa3□□□□□ -1.93
USP40-213ENST00000483216 C16orf90A8MZG2 172 aa3□□□□□ -1.93
USP40-213ENST00000483216 C8orf87E5RJ46 101 aa3□□□□□ -1.93
USP40-213ENST00000483216 RETNLBQ9BQ08 111 aa3□□□□□ -1.93
USP40-213ENST00000483216 NSD1Q96L73 2696 aaPredicted RBP3□□□□□ -1.93
USP40-213ENST00000483216 TLN2Q9Y4G6 2542 aa2.99□□□□□ -1.93
USP40-213ENST00000483216 FBN1P35555 2871 aaKnown RBP2.99□□□□□ -1.93
USP40-213ENST00000483216 A8MWP4 228 aa2.99□□□□□ -1.93
USP40-213ENST00000483216 CNBPP62633 177 aaKnown RBP2.99□□□□□ -1.93
USP40-213ENST00000483216 C6orf48Q9UBA6 75 aa2.99□□□□□ -1.93
USP40-213ENST00000483216 SONP18583 2426 aaKnown RBP2.99□□□□□ -1.93
USP40-213ENST00000483216 FN1P02751 2386 aaKnown RBP2.98□□□□□ -1.93
USP40-213ENST00000483216 JMJD1CQ15652 2540 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 IGLV10-54A0A075B6I4 117 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 M0R2N4 97 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 SPRR1AP35321 89 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 COA5Q86WW8 74 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 DEFB105AQ8NG35 78 aa2.98□□□□□ -1.93
USP40-213ENST00000483216 A0A1W2PNM2 257 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 K7EQZ3 153 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 ACYP2P14621 99 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 CLPSL2Q6UWE3 100 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 C9orf163Q8N9P6 203 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 XAGE1AQ9HD64 81 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 WNK1Q9H4A3 2382 aa2.97□□□□□ -1.93
USP40-213ENST00000483216 COL6A5A8TX70 2615 aa2.96□□□□□ -1.94
USP40-213ENST00000483216 ATRQ13535 2644 aa2.96□□□□□ -1.94
USP40-213ENST00000483216 LINC01554Q52M75 96 aa2.96□□□□□ -1.94
USP40-213ENST00000483216 Q8NAQ8 132 aa2.96□□□□□ -1.94
USP40-213ENST00000483216 A8MUU9 505 aa2.95□□□□□ -1.94
USP40-213ENST00000483216 LINC01556Q5JQF7 62 aa2.95□□□□□ -1.94
USP40-213ENST00000483216 WFDC10BQ8IUB3 73 aa2.95□□□□□ -1.94
USP40-213ENST00000483216 UQCR11O14957 56 aa2.93□□□□□ -1.94
USP40-213ENST00000483216 WFDC13Q8IUB5 93 aa2.93□□□□□ -1.94
USP40-213ENST00000483216 CUBNO60494 3623 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 A0A087WSZ3 146 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 SPRR1BP22528 89 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 ST20-AS1Q8NBB2 130 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 Q8NDZ9 215 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 PLAC8Q9NZF1 115 aa2.92□□□□□ -1.94
USP40-213ENST00000483216 ZNF706Q9Y5V0 76 aaPredicted RBP2.92□□□□□ -1.94
USP40-213ENST00000483216 A0A096LPF7 62 aa2.91□□□□□ -1.94
USP40-213ENST00000483216 A0A1B0GU69 56 aa2.91□□□□□ -1.94
USP40-213ENST00000483216 SPAG11AQ6PDA7 123 aa2.91□□□□□ -1.94
USP40-213ENST00000483216 STAB1Q9NY15 2570 aa2.9□□□□□ -1.94
USP40-213ENST00000483216 LINC00313P59037 77 aa2.89□□□□□ -1.95
USP40-213ENST00000483216 CIRBP-AS1Q8TBR5 109 aa2.89□□□□□ -1.95
USP40-213ENST00000483216 LINC00472Q9H8W2 130 aa2.89□□□□□ -1.95
USP40-213ENST00000483216 IGKV2-24A0A0C4DH68 120 aa2.88□□□□□ -1.95
USP40-213ENST00000483216 K7ERS5 55 aa2.88□□□□□ -1.95
USP40-213ENST00000483216 HTN3P15516 51 aa2.88□□□□□ -1.95
USP40-213ENST00000483216 SPATA8Q6RVD6 105 aa2.88□□□□□ -1.95
USP40-213ENST00000483216 FBN3Q75N90 2809 aa2.87□□□□□ -1.95
USP40-213ENST00000483216 TENM1Q9UKZ4 2725 aa2.87□□□□□ -1.95
USP40-213ENST00000483216 MIR22HGQ0VDD5 57 aa2.87□□□□□ -1.95
USP40-213ENST00000483216 DEFB135Q30KP9 77 aa2.87□□□□□ -1.95
USP40-213ENST00000483216 MRPL34Q9BQ48 92 aaKnown RBP2.87□□□□□ -1.95
USP40-213ENST00000483216 DNHD1Q96M86 4753 aa2.87□□□□□ -1.95
USP40-213ENST00000483216 MMP24-AS1A0A0U1RRL7 71 aa2.86□□□□□ -1.95
USP40-213ENST00000483216 KRTAP26-1Q6PEX3 210 aa2.86□□□□□ -1.95
USP40-213ENST00000483216 LINC00304Q8N9R0 145 aa2.86□□□□□ -1.95
USP40-213ENST00000483216 PKD1L1Q8TDX9 2849 aa2.86□□□□□ -1.95
USP40-213ENST00000483216 NBEAL1Q6ZS30 2694 aa2.86□□□□□ -1.95
USP40-213ENST00000483216 IGHV6-1A0A0B4J1U7 121 aa2.85□□□□□ -1.95
USP40-213ENST00000483216 C8orf17Q9NRJ1 99 aa2.85□□□□□ -1.95
USP40-213ENST00000483216 ANK2Q01484 3957 aa2.84□□□□□ -1.95
USP40-213ENST00000483216 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
USP40-213ENST00000483216 HRES1P13985 223 aa2.84□□□□□ -1.95
USP40-213ENST00000483216 PCOTHQ58A44 107 aa2.84□□□□□ -1.95
USP40-213ENST00000483216 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.95
USP40-213ENST00000483216 CMYA5Q8N3K9 4069 aa2.83□□□□□ -1.96
USP40-213ENST00000483216 VWFP04275 2813 aa2.83□□□□□ -1.96
USP40-213ENST00000483216 DEFB4AO15263 64 aa2.83□□□□□ -1.96
USP40-213ENST00000483216 DMAC1Q96GE9 116 aa2.83□□□□□ -1.96
USP40-213ENST00000483216 SPINK7P58062 85 aa2.82□□□□□ -1.96
USP40-213ENST00000483216 DNAH3Q8TD57 4116 aa2.82□□□□□ -1.96
USP40-213ENST00000483216 TRRAPQ9Y4A5 3859 aa2.82□□□□□ -1.96
USP40-213ENST00000483216 MGAM2Q2M2H8 2515 aa2.81□□□□□ -1.96
USP40-213ENST00000483216 NBEAL2Q6ZNJ1 2754 aa2.81□□□□□ -1.96
USP40-213ENST00000483216 MEGF8Q7Z7M0 2845 aa2.8□□□□□ -1.96
USP40-213ENST00000483216 KRTAP13-1Q8IUC0 172 aa2.79□□□□□ -1.96
USP40-213ENST00000483216 IGLV7-43P04211 117 aa2.77□□□□□ -1.97
USP40-213ENST00000483216 SSBP3-AS1Q7Z2R9 100 aa2.77□□□□□ -1.97
USP40-213ENST00000483216 LY6G6CO95867 125 aa2.76□□□□□ -1.97
USP40-213ENST00000483216 PRLHP81277 87 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms