RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 FP248Q71RG6 208 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-225ENST00000481502 UBL5Q9BZL1 73 aa4.72□□□□□ -1.65
SYNE1-225ENST00000481502 TNXBP22105 4242 aa4.71□□□□□ -1.65
SYNE1-225ENST00000481502 HRCT1Q6UXD1 115 aa4.71□□□□□ -1.66
SYNE1-225ENST00000481502 LINC00472Q9H8W2 130 aa4.71□□□□□ -1.66
SYNE1-225ENST00000481502 C1orf195Q5TG92 126 aa4.69□□□□□ -1.66
SYNE1-225ENST00000481502 LINC00846Q9NV44 126 aa4.69□□□□□ -1.66
SYNE1-225ENST00000481502 ATP5EP2Q5VTU8 51 aa4.67□□□□□ -1.66
SYNE1-225ENST00000481502 Q6ZVQ6 151 aa4.67□□□□□ -1.66
SYNE1-225ENST00000481502 Q96NJ1 140 aa4.67□□□□□ -1.66
SYNE1-225ENST00000481502 H3BS24 57 aa4.66□□□□□ -1.66
SYNE1-225ENST00000481502 NDUFB1O75438 58 aa4.66□□□□□ -1.66
SYNE1-225ENST00000481502 CXCL6P80162 114 aa4.66□□□□□ -1.66
SYNE1-225ENST00000481502 LINC00643Q86TS7 51 aa4.66□□□□□ -1.66
SYNE1-225ENST00000481502 SIGMAR1Q99720 223 aa4.66□□□□□ -1.66
SYNE1-225ENST00000481502 BPY2O14599 106 aa4.65□□□□□ -1.67
SYNE1-225ENST00000481502 IGKV4-1P06312 121 aa4.64□□□□□ -1.67
SYNE1-225ENST00000481502 PCLOQ9Y6V0 5065 aa4.63□□□□□ -1.67
SYNE1-225ENST00000481502 A8MWP4 228 aa4.63□□□□□ -1.67
SYNE1-225ENST00000481502 IGLV7-46A0A075B6I9 117 aa4.62□□□□□ -1.67
SYNE1-225ENST00000481502 C8orf87E5RJ46 101 aa4.62□□□□□ -1.67
SYNE1-225ENST00000481502 TPRXLQ17RH7 258 aa4.62□□□□□ -1.67
SYNE1-225ENST00000481502 A0A1B0GVX0 72 aa4.61□□□□□ -1.67
SYNE1-225ENST00000481502 PRR15Q8IV56 129 aa4.61□□□□□ -1.67
SYNE1-225ENST00000481502 DSCR10P59022 87 aa4.6□□□□□ -1.67
SYNE1-225ENST00000481502 IMUPQ9GZP8 106 aa4.6□□□□□ -1.67
SYNE1-225ENST00000481502 PRR4Q16378 134 aa4.59□□□□□ -1.67
SYNE1-225ENST00000481502 CDIP1Q9H305 208 aa4.59□□□□□ -1.67
SYNE1-225ENST00000481502 IGKV3D-7A0A0C4DH55 119 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 LINC00313P59037 77 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 DEFB116Q30KQ4 102 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 KRTAP13-3Q3SY46 172 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 RETNLBQ9BQ08 111 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
SYNE1-225ENST00000481502 IGHV6-1A0A0B4J1U7 121 aa4.55□□□□□ -1.68
SYNE1-225ENST00000481502 K7EQZ3 153 aa4.55□□□□□ -1.68
SYNE1-225ENST00000481502 C8orf17Q9NRJ1 99 aa4.55□□□□□ -1.68
SYNE1-225ENST00000481502 TMEM254Q8TBM7 123 aa4.53□□□□□ -1.68
SYNE1-225ENST00000481502 MMP24-AS1A0A0U1RRL7 71 aa4.52□□□□□ -1.69
SYNE1-225ENST00000481502 hDV103S1A0JD37 113 aa4.52□□□□□ -1.69
SYNE1-225ENST00000481502 HCG22E2RYF7 251 aa4.52□□□□□ -1.69
SYNE1-225ENST00000481502 Q8N9P0 234 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-225ENST00000481502 C20orf166-AS1Q96NR2 134 aa4.52□□□□□ -1.69
SYNE1-225ENST00000481502 A8MUU9 505 aa4.51□□□□□ -1.69
SYNE1-225ENST00000481502 KRTAP16-1A8MUX0 517 aa4.51□□□□□ -1.69
SYNE1-225ENST00000481502 HIST1H4AP62805 103 aaKnown RBP4.51□□□□□ -1.69
SYNE1-225ENST00000481502 Q75L30 129 aa4.51□□□□□ -1.69
SYNE1-225ENST00000481502 MRPL34Q9BQ48 92 aaKnown RBP4.51□□□□□ -1.69
SYNE1-225ENST00000481502 CASC2Q6XLA1 102 aa4.5□□□□□ -1.69
SYNE1-225ENST00000481502 Q8N9L7 120 aa4.5□□□□□ -1.69
SYNE1-225ENST00000481502 NOTCH2NLQ7Z3S9 236 aa4.49□□□□□ -1.69
SYNE1-225ENST00000481502 TP53AIP1Q9HCN2 124 aa4.49□□□□□ -1.69
SYNE1-225ENST00000481502 HERC1Q15751 4861 aa4.48□□□□□ -1.69
SYNE1-225ENST00000481502 C9orf92A6NGG3 77 aa4.48□□□□□ -1.69
SYNE1-225ENST00000481502 MT-ATP8P03928 68 aa4.48□□□□□ -1.69
SYNE1-225ENST00000481502 RPL37P61927 97 aaKnown RBP4.47□□□□□ -1.69
SYNE1-225ENST00000481502 SEC61BP60468 96 aaKnown RBP4.46□□□□□ -1.7
SYNE1-225ENST00000481502 SMIM20Q8N5G0 67 aa4.46□□□□□ -1.7
SYNE1-225ENST00000481502 ATP11AUNQ6ZP68 121 aa4.45□□□□□ -1.7
SYNE1-225ENST00000481502 WFDC13Q8IUB5 93 aa4.45□□□□□ -1.7
SYNE1-225ENST00000481502 LCE4AQ5TA78 99 aa4.44□□□□□ -1.7
SYNE1-225ENST00000481502 HMCN2Q8NDA2 5059 aa4.43□□□□□ -1.7
SYNE1-225ENST00000481502 A0A087WVE0 104 aa4.43□□□□□ -1.7
SYNE1-225ENST00000481502 UQCRQO14949 82 aa4.42□□□□□ -1.7
SYNE1-225ENST00000481502 SCGB1A1P11684 91 aa4.42□□□□□ -1.7
SYNE1-225ENST00000481502 ZCCHC13Q8WW36 166 aaKnown RBP4.42□□□□□ -1.7
SYNE1-225ENST00000481502 NDUFS5O43920 106 aa4.41□□□□□ -1.7
SYNE1-225ENST00000481502 KRTAP5-3Q6L8H2 238 aa4.41□□□□□ -1.7
SYNE1-225ENST00000481502 ATOX1O00244 68 aa4.4□□□□□ -1.71
SYNE1-225ENST00000481502 FAM236AA0A1B0GUQ0 79 aa4.39□□□□□ -1.71
SYNE1-225ENST00000481502 FAM236BA0A1B0GV22 79 aa4.39□□□□□ -1.71
SYNE1-225ENST00000481502 C5orf47Q569G3 176 aa4.39□□□□□ -1.71
SYNE1-225ENST00000481502 OCR1Q9BZK8 76 aa4.39□□□□□ -1.71
SYNE1-225ENST00000481502 H3BPC8 53 aa4.38□□□□□ -1.71
SYNE1-225ENST00000481502 LRP2P98164 4655 aa4.37□□□□□ -1.71
SYNE1-225ENST00000481502 TRAV22A0A0B4J277 110 aa4.37□□□□□ -1.71
SYNE1-225ENST00000481502 TRAV7A0A075B6U4 112 aa4.36□□□□□ -1.71
SYNE1-225ENST00000481502 PCOTHQ58A44 107 aa4.36□□□□□ -1.71
SYNE1-225ENST00000481502 LCE5AQ5TCM9 118 aa4.36□□□□□ -1.71
SYNE1-225ENST00000481502 MP68P56378 58 aa4.35□□□□□ -1.71
SYNE1-225ENST00000481502 LPAP08519 4548 aa4.35□□□□□ -1.71
SYNE1-225ENST00000481502 LOC101927531A0A1B0GV80 90 aa4.34□□□□□ -1.71
SYNE1-225ENST00000481502 Q5W150 140 aa4.34□□□□□ -1.71
SYNE1-225ENST00000481502 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
SYNE1-225ENST00000481502 SERP2Q8N6R1 65 aa4.33□□□□□ -1.72
SYNE1-225ENST00000481502 C7orf65Q6ZTY9 151 aa4.32□□□□□ -1.72
SYNE1-225ENST00000481502 H0Y9P7 68 aa4.31□□□□□ -1.72
SYNE1-225ENST00000481502 IGKV2-30P06310 120 aa4.31□□□□□ -1.72
SYNE1-225ENST00000481502 SPINK7P58062 85 aa4.31□□□□□ -1.72
SYNE1-225ENST00000481502 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
SYNE1-225ENST00000481502 KRTAP9-7A8MTY7 169 aa4.28□□□□□ -1.72
SYNE1-225ENST00000481502 COX7CP15954 63 aa4.28□□□□□ -1.72
SYNE1-225ENST00000481502 C1orf64Q8NEQ6 169 aa4.28□□□□□ -1.72
SYNE1-225ENST00000481502 KRTAP9-8Q9BYQ0 159 aa4.28□□□□□ -1.72
SYNE1-225ENST00000481502 CYP4F30PQ9H0H9 118 aa4.28□□□□□ -1.72
SYNE1-225ENST00000481502 LINC00208Q96KT6 92 aa4.27□□□□□ -1.73
SYNE1-225ENST00000481502 IGKV2D-30A0A075B6S6 120 aa4.26□□□□□ -1.73
SYNE1-225ENST00000481502 KLKP1Q107X0 134 aa4.26□□□□□ -1.73
SYNE1-225ENST00000481502 MPLKIPQ8TAP9 179 aa4.26□□□□□ -1.73
SYNE1-225ENST00000481502 ANAPC13Q9BS18 74 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms