RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 RETNLBQ9BQ08 111 aa11.18□□□□□ -0.62
CCDC88B-207ENST00000479965 KRTAP24-1Q3LI83 254 aa11.15□□□□□ -0.62
CCDC88B-207ENST00000479965 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.15□□□□□ -0.62
CCDC88B-207ENST00000479965 A0A1B0GU69 56 aa11.14□□□□□ -0.63
CCDC88B-207ENST00000479965 MGAM2Q2M2H8 2515 aa11.14□□□□□ -0.63
CCDC88B-207ENST00000479965 WWC2-AS2Q96NR7 200 aa11.13□□□□□ -0.63
CCDC88B-207ENST00000479965 HUWE1Q7Z6Z7 4374 aaKnown RBP11.13□□□□□ -0.63
CCDC88B-207ENST00000479965 CMYA5Q8N3K9 4069 aa11.11□□□□□ -0.63
CCDC88B-207ENST00000479965 LINC00483Q53H64 154 aa11.07□□□□□ -0.64
CCDC88B-207ENST00000479965 ZNF706Q9Y5V0 76 aaPredicted RBP11.07□□□□□ -0.64
CCDC88B-207ENST00000479965 CIRBP-AS1Q8TBR5 109 aa11.07□□□□□ -0.64
CCDC88B-207ENST00000479965 PSORS1C2Q9UIG4 136 aa11.05□□□□□ -0.64
CCDC88B-207ENST00000479965 LINC01554Q52M75 96 aa11.03□□□□□ -0.64
CCDC88B-207ENST00000479965 PLA2G1BP04054 148 aaKnown RBP11.02□□□□□ -0.64
CCDC88B-207ENST00000479965 KRTAP13-3Q3SY46 172 aa11.02□□□□□ -0.65
CCDC88B-207ENST00000479965 SPACA4Q8TDM5 124 aa11.02□□□□□ -0.65
CCDC88B-207ENST00000479965 FRAS1Q86XX4 4008 aa11.02□□□□□ -0.65
CCDC88B-207ENST00000479965 C4orf48Q5BLP8 95 aa11.02□□□□□ -0.65
CCDC88B-207ENST00000479965 MIR22HGQ0VDD5 57 aa11□□□□□ -0.65
CCDC88B-207ENST00000479965 DMAC1Q96GE9 116 aa11□□□□□ -0.65
CCDC88B-207ENST00000479965 APLNQ9ULZ1 77 aa11□□□□□ -0.65
CCDC88B-207ENST00000479965 DNAH7Q8WXX0 4024 aa10.99□□□□□ -0.65
CCDC88B-207ENST00000479965 NBDYA0A0U1RRE5 68 aa10.97□□□□□ -0.65
CCDC88B-207ENST00000479965 DNAH3Q8TD57 4116 aa10.97□□□□□ -0.65
CCDC88B-207ENST00000479965 UQCR11O14957 56 aa10.96□□□□□ -0.66
CCDC88B-207ENST00000479965 ZNF861PO60384 105 aa10.95□□□□□ -0.66
CCDC88B-207ENST00000479965 SPATA8Q6RVD6 105 aa10.95□□□□□ -0.66
CCDC88B-207ENST00000479965 IGLV5-52A0A0A0MRZ9 124 aa10.95□□□□□ -0.66
CCDC88B-207ENST00000479965 RTL8CO15255 209 aa10.93□□□□□ -0.66
CCDC88B-207ENST00000479965 ALMS1Q8TCU4 4167 aa10.9□□□□□ -0.66
CCDC88B-207ENST00000479965 CSAG1Q6PB30 78 aa10.89□□□□□ -0.67
CCDC88B-207ENST00000479965 Q6ZRN7 208 aaPredicted RBP10.89□□□□□ -0.67
CCDC88B-207ENST00000479965 FAM229AH3BQW9 127 aa10.89□□□□□ -0.67
CCDC88B-207ENST00000479965 DNAH8Q96JB1 4490 aa10.88□□□□□ -0.67
CCDC88B-207ENST00000479965 IGKV2D-30A0A075B6S6 120 aa10.88□□□□□ -0.67
CCDC88B-207ENST00000479965 IGKV2-30P06310 120 aa10.88□□□□□ -0.67
CCDC88B-207ENST00000479965 SPINK1P00995 79 aa10.84□□□□□ -0.67
CCDC88B-207ENST00000479965 H3BS24 57 aa10.83□□□□□ -0.68
CCDC88B-207ENST00000479965 A0A087WTM6 91 aa10.82□□□□□ -0.68
CCDC88B-207ENST00000479965 PLECQ15149 4684 aaKnown RBP10.82□□□□□ -0.68
CCDC88B-207ENST00000479965 TGP01266 2768 aa10.79□□□□□ -0.68
CCDC88B-207ENST00000479965 IGLV7-43P04211 117 aa10.75□□□□□ -0.69
CCDC88B-207ENST00000479965 MEGF8Q7Z7M0 2845 aa10.7□□□□□ -0.7
CCDC88B-207ENST00000479965 SSBP3-AS1Q7Z2R9 100 aa10.7□□□□□ -0.7
CCDC88B-207ENST00000479965 FBN3Q75N90 2809 aa10.67□□□□□ -0.7
CCDC88B-207ENST00000479965 DNAH17Q9UFH2 4485 aa10.67□□□□□ -0.7
CCDC88B-207ENST00000479965 Q8N1X5 172 aa10.66□□□□□ -0.7
CCDC88B-207ENST00000479965 HECTD4Q9Y4D8 3996 aa10.66□□□□□ -0.7
CCDC88B-207ENST00000479965 NUPR2A6NF83 97 aa10.64□□□□□ -0.71
CCDC88B-207ENST00000479965 KRTAP16-1A8MUX0 517 aa10.6□□□□□ -0.71
CCDC88B-207ENST00000479965 KRTAP13-2Q52LG2 175 aa10.56□□□□□ -0.72
CCDC88B-207ENST00000479965 FLG2Q5D862 2391 aaPredicted RBP10.56□□□□□ -0.72
CCDC88B-207ENST00000479965 KMT2AQ03164 3969 aa10.55□□□□□ -0.72
CCDC88B-207ENST00000479965 C1orf134Q5TEV5 83 aa10.54□□□□□ -0.72
CCDC88B-207ENST00000479965 STARD9Q9P2P6 4700 aa10.54□□□□□ -0.72
CCDC88B-207ENST00000479965 DYNC2H1Q8NCM8 4307 aaKnown RBP10.52□□□□□ -0.73
CCDC88B-207ENST00000479965 VPS13DQ5THJ4 4388 aa10.5□□□□□ -0.73
CCDC88B-207ENST00000479965 DNAH2Q9P225 4427 aa10.49□□□□□ -0.73
CCDC88B-207ENST00000479965 Q6ZSA8 131 aa10.48□□□□□ -0.73
CCDC88B-207ENST00000479965 H0YAA0 97 aa10.47□□□□□ -0.73
CCDC88B-207ENST00000479965 LY6G6CO95867 125 aa10.45□□□□□ -0.74
CCDC88B-207ENST00000479965 TYMSOSQ8TAI1 123 aa10.44□□□□□ -0.74
CCDC88B-207ENST00000479965 CRIPTQ9P021 101 aa10.44□□□□□ -0.74
CCDC88B-207ENST00000479965 A8MUU9 505 aa10.43□□□□□ -0.74
CCDC88B-207ENST00000479965 LINC00304Q8N9R0 145 aa10.42□□□□□ -0.74
CCDC88B-207ENST00000479965 DNAH6Q9C0G6 4158 aa10.42□□□□□ -0.74
CCDC88B-207ENST00000479965 KRTAP25-1Q3LHN0 102 aa10.41□□□□□ -0.74
CCDC88B-207ENST00000479965 DNAH11Q96DT5 4516 aa10.4□□□□□ -0.74
CCDC88B-207ENST00000479965 A0A1B0GU33 70 aa10.37□□□□□ -0.75
CCDC88B-207ENST00000479965 KRTAP10-2P60368 255 aa10.36□□□□□ -0.75
CCDC88B-207ENST00000479965 ROMO1P60602 79 aa10.33□□□□□ -0.76
CCDC88B-207ENST00000479965 LRP1BQ9NZR2 4599 aa10.29□□□□□ -0.76
CCDC88B-207ENST00000479965 KRTAP1-4P0C5Y4 121 aa10.28□□□□□ -0.76
CCDC88B-207ENST00000479965 H1FX-AS1Q4G0G2 97 aa10.26□□□□□ -0.77
CCDC88B-207ENST00000479965 PRKDCP78527 4128 aaKnown RBP10.24□□□□□ -0.77
CCDC88B-207ENST00000479965 C9orf92A6NGG3 77 aa10.24□□□□□ -0.77
CCDC88B-207ENST00000479965 DNAH5Q8TE73 4624 aa10.22□□□□□ -0.77
CCDC88B-207ENST00000479965 K7ERS5 55 aa10.2□□□□□ -0.78
CCDC88B-207ENST00000479965 KRTAP10-1P60331 282 aa10.2□□□□□ -0.78
CCDC88B-207ENST00000479965 KRTAP3-1Q9BYR8 98 aa10.16□□□□□ -0.78
CCDC88B-207ENST00000479965 DMBT1Q9UGM3 2413 aaPredicted RBP10.15□□□□□ -0.78
CCDC88B-207ENST00000479965 VPS13BQ7Z7G8 4022 aa10.14□□□□□ -0.79
CCDC88B-207ENST00000479965 COX6B2Q6YFQ2 88 aa10.09□□□□□ -0.79
CCDC88B-207ENST00000479965 P0C880 135 aa10.05□□□□□ -0.8
CCDC88B-207ENST00000479965 A0A0D9SG42 100 aa10.01□□□□□ -0.81
CCDC88B-207ENST00000479965 SPINT4Q6UDR6 99 aa10□□□□□ -0.81
CCDC88B-207ENST00000479965 FAT2Q9NYQ8 4349 aa9.96□□□□□ -0.82
CCDC88B-207ENST00000479965 C20orf166-AS1Q96NR2 134 aa9.95□□□□□ -0.82
CCDC88B-207ENST00000479965 RPL37P61927 97 aaKnown RBP9.91□□□□□ -0.82
CCDC88B-207ENST00000479965 SMR3BP02814 79 aaPredicted RBP9.89□□□□□ -0.83
CCDC88B-207ENST00000479965 C10orf95Q9H7T3 257 aa9.87□□□□□ -0.83
CCDC88B-207ENST00000479965 PKD1P98161 4303 aa9.87□□□□□ -0.83
CCDC88B-207ENST00000479965 HYDINQ4G0P3 5121 aa9.85□□□□□ -0.83
CCDC88B-207ENST00000479965 TPRXLQ17RH7 258 aa9.85□□□□□ -0.83
CCDC88B-207ENST00000479965 RPS29P62273 56 aaKnown RBP9.83□□□□□ -0.84
CCDC88B-207ENST00000479965 KRTAP13-4Q3LI77 160 aa9.82□□□□□ -0.84
CCDC88B-207ENST00000479965 KRTAP10-6P60371 365 aaPredicted RBP9.76□□□□□ -0.85
CCDC88B-207ENST00000479965 NDUFAF8A1L188 74 aa9.75□□□□□ -0.85
CCDC88B-207ENST00000479965 PKHD1P08F94 4074 aa9.73□□□□□ -0.85
CCDC88B-207ENST00000479965 FAT1Q14517 4588 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms