RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 Q8N1X5 172 aa8.28□□□□□ -1.08
USP42-206ENST00000479544 LINC01558Q9Y6Z2 57 aa8.27□□□□□ -1.09
USP42-206ENST00000479544 TENM2Q9NT68 2774 aa8.25□□□□□ -1.09
USP42-206ENST00000479544 KRTAP7-1Q8IUC3 87 aa8.25□□□□□ -1.09
USP42-206ENST00000479544 KRTAP29-1A8MX34 341 aaPredicted RBP8.25□□□□□ -1.09
USP42-206ENST00000479544 SSBP3-AS1Q7Z2R9 100 aa8.23□□□□□ -1.09
USP42-206ENST00000479544 A0A087WTM6 91 aa8.22□□□□□ -1.09
USP42-206ENST00000479544 KRTAP11-1Q8IUC1 163 aa8.22□□□□□ -1.09
USP42-206ENST00000479544 APLNQ9ULZ1 77 aa8.21□□□□□ -1.1
USP42-206ENST00000479544 DNHD1Q96M86 4753 aa8.21□□□□□ -1.1
USP42-206ENST00000479544 SRRM2Q9UQ35 2752 aaKnown RBP8.21□□□□□ -1.1
USP42-206ENST00000479544 A0A087X002 238 aa8.2□□□□□ -1.1
USP42-206ENST00000479544 PANO1I0J062 215 aa8.2□□□□□ -1.1
USP42-206ENST00000479544 NOTCH2NLQ7Z3S9 236 aa8.2□□□□□ -1.1
USP42-206ENST00000479544 TYMSOSQ8TAI1 123 aa8.18□□□□□ -1.1
USP42-206ENST00000479544 PLA2G1BP04054 148 aaKnown RBP8.17□□□□□ -1.1
USP42-206ENST00000479544 LCE6AA0A183 80 aa8.16□□□□□ -1.1
USP42-206ENST00000479544 LINC01554Q52M75 96 aa8.16□□□□□ -1.1
USP42-206ENST00000479544 VPS13CQ709C8 3753 aa8.15□□□□□ -1.1
USP42-206ENST00000479544 C9orf92A6NGG3 77 aa8.15□□□□□ -1.11
USP42-206ENST00000479544 IGLV7-43P04211 117 aa8.14□□□□□ -1.11
USP42-206ENST00000479544 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
USP42-206ENST00000479544 ADM2Q7Z4H4 148 aa8.14□□□□□ -1.11
USP42-206ENST00000479544 CRIPTQ9P021 101 aa8.14□□□□□ -1.11
USP42-206ENST00000479544 CSAG1Q6PB30 78 aa8.13□□□□□ -1.11
USP42-206ENST00000479544 H3BS24 57 aa8.13□□□□□ -1.11
USP42-206ENST00000479544 SPRR1BP22528 89 aa8.12□□□□□ -1.11
USP42-206ENST00000479544 ANK3Q12955 4377 aaKnown RBP8.12□□□□□ -1.11
USP42-206ENST00000479544 Q5W150 140 aa8.11□□□□□ -1.11
USP42-206ENST00000479544 TGP01266 2768 aa8.09□□□□□ -1.11
USP42-206ENST00000479544 A6NN06 94 aa8.06□□□□□ -1.12
USP42-206ENST00000479544 A0A0D9SG42 100 aa8.05□□□□□ -1.12
USP42-206ENST00000479544 SMR3BP02814 79 aaPredicted RBP8.04□□□□□ -1.12
USP42-206ENST00000479544 Q6ZR54 194 aa8.01□□□□□ -1.13
USP42-206ENST00000479544 ZNF469Q96JG9 3925 aaPredicted RBP8□□□□□ -1.13
USP42-206ENST00000479544 TRRAPQ9Y4A5 3859 aa7.98□□□□□ -1.13
USP42-206ENST00000479544 A0A1B0GU33 70 aa7.94□□□□□ -1.14
USP42-206ENST00000479544 LINC00304Q8N9R0 145 aa7.94□□□□□ -1.14
USP42-206ENST00000479544 DMAC1Q96GE9 116 aa7.92□□□□□ -1.14
USP42-206ENST00000479544 COL7A1Q02388 2944 aa7.92□□□□□ -1.14
USP42-206ENST00000479544 MEGF8Q7Z7M0 2845 aa7.9□□□□□ -1.14
USP42-206ENST00000479544 PLAC8Q9NZF1 115 aa7.89□□□□□ -1.15
USP42-206ENST00000479544 LINC00483Q53H64 154 aa7.83□□□□□ -1.16
USP42-206ENST00000479544 SPATA8Q6RVD6 105 aa7.82□□□□□ -1.16
USP42-206ENST00000479544 CSMD3Q7Z407 3707 aa7.8□□□□□ -1.16
USP42-206ENST00000479544 KRTAP10-2P60368 255 aa7.78□□□□□ -1.16
USP42-206ENST00000479544 KRTAP13-1Q8IUC0 172 aa7.78□□□□□ -1.16
USP42-206ENST00000479544 ANK2Q01484 3957 aa7.75□□□□□ -1.17
USP42-206ENST00000479544 Q6ZRN7 208 aaPredicted RBP7.73□□□□□ -1.17
USP42-206ENST00000479544 KRTAP10-1P60331 282 aa7.69□□□□□ -1.18
USP42-206ENST00000479544 KRTAP13-2Q52LG2 175 aa7.64□□□□□ -1.19
USP42-206ENST00000479544 H1FX-AS1Q4G0G2 97 aa7.63□□□□□ -1.19
USP42-206ENST00000479544 ASB16-AS1Q495Z4 193 aa7.6□□□□□ -1.19
USP42-206ENST00000479544 KRTAP25-1Q3LHN0 102 aa7.58□□□□□ -1.2
USP42-206ENST00000479544 RPL37P61927 97 aaKnown RBP7.56□□□□□ -1.2
USP42-206ENST00000479544 ROMO1P60602 79 aa7.54□□□□□ -1.2
USP42-206ENST00000479544 Q6ZSA8 131 aa7.51□□□□□ -1.21
USP42-206ENST00000479544 LUZP6Q538Z0 58 aa7.51□□□□□ -1.21
USP42-206ENST00000479544 A8MUU9 505 aa7.46□□□□□ -1.21
USP42-206ENST00000479544 PRKDCP78527 4128 aaKnown RBP7.45□□□□□ -1.22
USP42-206ENST00000479544 COX6B2Q6YFQ2 88 aa7.44□□□□□ -1.22
USP42-206ENST00000479544 H0YAA0 97 aa7.43□□□□□ -1.22
USP42-206ENST00000479544 NDUFAF8A1L188 74 aa7.43□□□□□ -1.22
USP42-206ENST00000479544 S4R3F8 94 aa7.43□□□□□ -1.22
USP42-206ENST00000479544 J3QL48 77 aa7.43□□□□□ -1.22
USP42-206ENST00000479544 C10orf95Q9H7T3 257 aa7.39□□□□□ -1.23
USP42-206ENST00000479544 KRTAP13-3Q3SY46 172 aa7.38□□□□□ -1.23
USP42-206ENST00000479544 KRTAP16-1A8MUX0 517 aa7.32□□□□□ -1.24
USP42-206ENST00000479544 DNAH9Q9NYC9 4486 aa7.3□□□□□ -1.24
USP42-206ENST00000479544 KRTAP1-4P0C5Y4 121 aa7.3□□□□□ -1.24
USP42-206ENST00000479544 CAMK2N1Q7Z7J9 78 aa7.29□□□□□ -1.24
USP42-206ENST00000479544 R4GN34 69 aa7.29□□□□□ -1.24
USP42-206ENST00000479544 BIRC6Q9NR09 4857 aa7.28□□□□□ -1.24
USP42-206ENST00000479544 A0A0A0MQY5 61 aa7.26□□□□□ -1.25
USP42-206ENST00000479544 M0QZ58 72 aa7.25□□□□□ -1.25
USP42-206ENST00000479544 A0A1B0GVY2 172 aa7.22□□□□□ -1.25
USP42-206ENST00000479544 Q5VSD8 79 aa7.21□□□□□ -1.25
USP42-206ENST00000479544 KMT2CQ8NEZ4 4911 aaKnown RBP7.17□□□□□ -1.26
USP42-206ENST00000479544 CMYA5Q8N3K9 4069 aa7.16□□□□□ -1.26
USP42-206ENST00000479544 C20orf166-AS1Q96NR2 134 aa7.15□□□□□ -1.27
USP42-206ENST00000479544 HUWE1Q7Z6Z7 4374 aaKnown RBP7.14□□□□□ -1.27
USP42-206ENST00000479544 KRTAP17-1Q9BYP8 105 aa7.14□□□□□ -1.27
USP42-206ENST00000479544 RPS29P62273 56 aaKnown RBP7.14□□□□□ -1.27
USP42-206ENST00000479544 DYNC2H1Q8NCM8 4307 aaKnown RBP7.12□□□□□ -1.27
USP42-206ENST00000479544 RYR2Q92736 4967 aa7.1□□□□□ -1.27
USP42-206ENST00000479544 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
USP42-206ENST00000479544 P0C880 135 aa7.1□□□□□ -1.27
USP42-206ENST00000479544 RYR3Q15413 4870 aa7.07□□□□□ -1.28
USP42-206ENST00000479544 DNAH3Q8TD57 4116 aa7.06□□□□□ -1.28
USP42-206ENST00000479544 KRTAP3-1Q9BYR8 98 aa7.03□□□□□ -1.28
USP42-206ENST00000479544 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
USP42-206ENST00000479544 SACSQ9NZJ4 4579 aa7.01□□□□□ -1.29
USP42-206ENST00000479544 PLECQ15149 4684 aaKnown RBP7.01□□□□□ -1.29
USP42-206ENST00000479544 TPRXLQ17RH7 258 aa6.96□□□□□ -1.3
USP42-206ENST00000479544 KRTAP4-5Q9BYR2 181 aa6.95□□□□□ -1.3
USP42-206ENST00000479544 DNAH1Q9P2D7 4330 aa6.93□□□□□ -1.3
USP42-206ENST00000479544 EPPK1P58107 5090 aaKnown RBP6.92□□□□□ -1.3
USP42-206ENST00000479544 STARD9Q9P2P6 4700 aa6.91□□□□□ -1.3
USP42-206ENST00000479544 XP32Q5T750 250 aa6.89□□□□□ -1.31
USP42-206ENST00000479544 KRTAP13-4Q3LI77 160 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms