RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ANK2Q01484 3957 aa12.49□□□□□ -0.41
SDF4-206ENST00000478938 SPINK6Q6UWN8 80 aa12.47□□□□□ -0.41
SDF4-206ENST00000478938 KRTAP13-1Q8IUC0 172 aa12.46□□□□□ -0.42
SDF4-206ENST00000478938 ROMO1P60602 79 aa12.44□□□□□ -0.42
SDF4-206ENST00000478938 LYSTQ99698 3801 aa12.44□□□□□ -0.42
SDF4-206ENST00000478938 NBEAL1Q6ZS30 2694 aa12.44□□□□□ -0.42
SDF4-206ENST00000478938 OXLD1Q5BKU9 147 aa12.41□□□□□ -0.42
SDF4-206ENST00000478938 KRTAP10-11P60412 298 aa12.39□□□□□ -0.43
SDF4-206ENST00000478938 ANAPC11Q9NYG5 84 aa12.38□□□□□ -0.43
SDF4-206ENST00000478938 KRTAP1-5Q9BYS1 174 aa12.38□□□□□ -0.43
SDF4-206ENST00000478938 KRTAP25-1Q3LHN0 102 aa12.37□□□□□ -0.43
SDF4-206ENST00000478938 PANO1I0J062 215 aa12.34□□□□□ -0.43
SDF4-206ENST00000478938 STAB1Q9NY15 2570 aa12.34□□□□□ -0.43
SDF4-206ENST00000478938 IGLV7-43P04211 117 aa12.34□□□□□ -0.43
SDF4-206ENST00000478938 WWC2-AS2Q96NR7 200 aa12.33□□□□□ -0.44
SDF4-206ENST00000478938 LINC00483Q53H64 154 aa12.32□□□□□ -0.44
SDF4-206ENST00000478938 NOTCH1P46531 2555 aa12.3□□□□□ -0.44
SDF4-206ENST00000478938 IGKV2-30P06310 120 aa12.28□□□□□ -0.44
SDF4-206ENST00000478938 DNAH9Q9NYC9 4486 aa12.26□□□□□ -0.45
SDF4-206ENST00000478938 KRTAP24-1Q3LI83 254 aa12.25□□□□□ -0.45
SDF4-206ENST00000478938 A8MUU9 505 aa12.25□□□□□ -0.45
SDF4-206ENST00000478938 IGLV5-52A0A0A0MRZ9 124 aa12.24□□□□□ -0.45
SDF4-206ENST00000478938 COL6A5A8TX70 2615 aa12.22□□□□□ -0.45
SDF4-206ENST00000478938 FAM229AH3BQW9 127 aa12.22□□□□□ -0.45
SDF4-206ENST00000478938 LINC00304Q8N9R0 145 aa12.21□□□□□ -0.45
SDF4-206ENST00000478938 P0C880 135 aa12.2□□□□□ -0.46
SDF4-206ENST00000478938 SPINK1P00995 79 aa12.19□□□□□ -0.46
SDF4-206ENST00000478938 FLG2Q5D862 2391 aaPredicted RBP12.16□□□□□ -0.46
SDF4-206ENST00000478938 H0YAA0 97 aa12.16□□□□□ -0.46
SDF4-206ENST00000478938 CRIPTQ9P021 101 aa12.15□□□□□ -0.46
SDF4-206ENST00000478938 MEGF8Q7Z7M0 2845 aa12.14□□□□□ -0.47
SDF4-206ENST00000478938 IGKV2D-30A0A075B6S6 120 aa12.14□□□□□ -0.47
SDF4-206ENST00000478938 FRAS1Q86XX4 4008 aa12.14□□□□□ -0.47
SDF4-206ENST00000478938 C14orf177Q52M58 125 aa12.13□□□□□ -0.47
SDF4-206ENST00000478938 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.12□□□□□ -0.47
SDF4-206ENST00000478938 CIRBP-AS1Q8TBR5 109 aa12.11□□□□□ -0.47
SDF4-206ENST00000478938 CMYA5Q8N3K9 4069 aa12.1□□□□□ -0.47
SDF4-206ENST00000478938 DNAH8Q96JB1 4490 aa12.09□□□□□ -0.47
SDF4-206ENST00000478938 Q6ZSA8 131 aa12.09□□□□□ -0.47
SDF4-206ENST00000478938 KRTAP21-3Q3LHN1 58 aa12.08□□□□□ -0.48
SDF4-206ENST00000478938 LY6G6CO95867 125 aa12.05□□□□□ -0.48
SDF4-206ENST00000478938 PSORS1C2Q9UIG4 136 aa12.04□□□□□ -0.48
SDF4-206ENST00000478938 SPACA4Q8TDM5 124 aa12.01□□□□□ -0.49
SDF4-206ENST00000478938 DNAH3Q8TD57 4116 aa12□□□□□ -0.49
SDF4-206ENST00000478938 UBE2DNLQ8IWF7 75 aa11.97□□□□□ -0.49
SDF4-206ENST00000478938 Q8N1X5 172 aa11.97□□□□□ -0.49
SDF4-206ENST00000478938 KRTAP16-1A8MUX0 517 aa11.96□□□□□ -0.49
SDF4-206ENST00000478938 HUWE1Q7Z6Z7 4374 aaKnown RBP11.95□□□□□ -0.5
SDF4-206ENST00000478938 TGP01266 2768 aa11.94□□□□□ -0.5
SDF4-206ENST00000478938 TYMSOSQ8TAI1 123 aa11.94□□□□□ -0.5
SDF4-206ENST00000478938 MGAM2Q2M2H8 2515 aa11.92□□□□□ -0.5
SDF4-206ENST00000478938 SSBP3-AS1Q7Z2R9 100 aa11.9□□□□□ -0.5
SDF4-206ENST00000478938 DNAH7Q8WXX0 4024 aa11.89□□□□□ -0.51
SDF4-206ENST00000478938 STAB2Q8WWQ8 2551 aa11.88□□□□□ -0.51
SDF4-206ENST00000478938 A0A1B0GU33 70 aa11.86□□□□□ -0.51
SDF4-206ENST00000478938 DNAH17Q9UFH2 4485 aa11.86□□□□□ -0.51
SDF4-206ENST00000478938 H1FX-AS1Q4G0G2 97 aa11.78□□□□□ -0.52
SDF4-206ENST00000478938 Q6ZRN7 208 aaPredicted RBP11.76□□□□□ -0.53
SDF4-206ENST00000478938 SPINT4Q6UDR6 99 aa11.75□□□□□ -0.53
SDF4-206ENST00000478938 APLNQ9ULZ1 77 aa11.73□□□□□ -0.53
SDF4-206ENST00000478938 NDUFAF8A1L188 74 aa11.72□□□□□ -0.53
SDF4-206ENST00000478938 A0A087WTM6 91 aa11.71□□□□□ -0.54
SDF4-206ENST00000478938 HECTD4Q9Y4D8 3996 aa11.7□□□□□ -0.54
SDF4-206ENST00000478938 NBDYA0A0U1RRE5 68 aa11.7□□□□□ -0.54
SDF4-206ENST00000478938 DNHD1Q96M86 4753 aa11.69□□□□□ -0.54
SDF4-206ENST00000478938 K7ERS5 55 aa11.67□□□□□ -0.54
SDF4-206ENST00000478938 VPS13DQ5THJ4 4388 aa11.62□□□□□ -0.55
SDF4-206ENST00000478938 C20orf166-AS1Q96NR2 134 aa11.61□□□□□ -0.55
SDF4-206ENST00000478938 NUPR2A6NF83 97 aa11.61□□□□□ -0.55
SDF4-206ENST00000478938 TPRXLQ17RH7 258 aa11.6□□□□□ -0.55
SDF4-206ENST00000478938 PLECQ15149 4684 aaKnown RBP11.59□□□□□ -0.55
SDF4-206ENST00000478938 KRTAP13-2Q52LG2 175 aa11.58□□□□□ -0.56
SDF4-206ENST00000478938 COX6B2Q6YFQ2 88 aa11.53□□□□□ -0.56
SDF4-206ENST00000478938 KRTAP15-1Q3LI76 137 aa11.53□□□□□ -0.56
SDF4-206ENST00000478938 A0A0A0MQY5 61 aa11.51□□□□□ -0.57
SDF4-206ENST00000478938 C10orf95Q9H7T3 257 aa11.49□□□□□ -0.57
SDF4-206ENST00000478938 DYNC2H1Q8NCM8 4307 aaKnown RBP11.49□□□□□ -0.57
SDF4-206ENST00000478938 KRTAP3-1Q9BYR8 98 aa11.49□□□□□ -0.57
SDF4-206ENST00000478938 KMT2AQ03164 3969 aa11.49□□□□□ -0.57
SDF4-206ENST00000478938 FBN3Q75N90 2809 aa11.48□□□□□ -0.57
SDF4-206ENST00000478938 DNAH2Q9P225 4427 aa11.38□□□□□ -0.59
SDF4-206ENST00000478938 DMBT1Q9UGM3 2413 aaPredicted RBP11.36□□□□□ -0.59
SDF4-206ENST00000478938 RPL37P61927 97 aaKnown RBP11.34□□□□□ -0.59
SDF4-206ENST00000478938 PRKDCP78527 4128 aaKnown RBP11.33□□□□□ -0.6
SDF4-206ENST00000478938 A0A0D9SG42 100 aa11.32□□□□□ -0.6
SDF4-206ENST00000478938 DNAH11Q96DT5 4516 aa11.32□□□□□ -0.6
SDF4-206ENST00000478938 STARD9Q9P2P6 4700 aa11.29□□□□□ -0.6
SDF4-206ENST00000478938 DNAH6Q9C0G6 4158 aa11.27□□□□□ -0.61
SDF4-206ENST00000478938 KRTAP13-4Q3LI77 160 aa11.25□□□□□ -0.61
SDF4-206ENST00000478938 KRTAP1-4P0C5Y4 121 aa11.21□□□□□ -0.62
SDF4-206ENST00000478938 C9orf92A6NGG3 77 aa11.14□□□□□ -0.63
SDF4-206ENST00000478938 KRTAP10-6P60371 365 aaPredicted RBP11.14□□□□□ -0.63
SDF4-206ENST00000478938 LRP1BQ9NZR2 4599 aa11.13□□□□□ -0.63
SDF4-206ENST00000478938 DNAH5Q8TE73 4624 aa11.06□□□□□ -0.64
SDF4-206ENST00000478938 KRTAP10-2P60368 255 aa11□□□□□ -0.65
SDF4-206ENST00000478938 S4R3F8 94 aa11□□□□□ -0.65
SDF4-206ENST00000478938 VPS13BQ7Z7G8 4022 aa10.98□□□□□ -0.65
SDF4-206ENST00000478938 KRTAP3-2Q9BYR7 98 aa10.97□□□□□ -0.65
SDF4-206ENST00000478938 KRTAP12-2P59991 146 aa10.96□□□□□ -0.66
SDF4-206ENST00000478938 LUZP6Q538Z0 58 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms