RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 APLNQ9ULZ1 77 aa3.08□□□□□ -1.92
CCDC39-204ENST00000476379 VPS13DQ5THJ4 4388 aa3.08□□□□□ -1.92
CCDC39-204ENST00000476379 A0A087X002 238 aa3.08□□□□□ -1.92
CCDC39-204ENST00000476379 NOTCH2NLQ7Z3S9 236 aa3.08□□□□□ -1.92
CCDC39-204ENST00000476379 KRTAP16-1A8MUX0 517 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 EPPK1P58107 5090 aaKnown RBP3.07□□□□□ -1.92
CCDC39-204ENST00000476379 DNAH3Q8TD57 4116 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 C9orf92A6NGG3 77 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 H3BNG1 76 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 C1orf134Q5TEV5 83 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 A8MWP4 228 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 DNAH6Q9C0G6 4158 aa3.07□□□□□ -1.92
CCDC39-204ENST00000476379 CNBPP62633 177 aaKnown RBP3.07□□□□□ -1.92
CCDC39-204ENST00000476379 KRTAP10-2P60368 255 aa3.06□□□□□ -1.92
CCDC39-204ENST00000476379 NUPR2A6NF83 97 aa3.06□□□□□ -1.92
CCDC39-204ENST00000476379 BCE1O60756 84 aa3.06□□□□□ -1.92
CCDC39-204ENST00000476379 Q8N1X5 172 aa3.06□□□□□ -1.92
CCDC39-204ENST00000476379 Q8N9P0 234 aaPredicted RBP3.05□□□□□ -1.92
CCDC39-204ENST00000476379 C9orf163Q8N9P6 203 aa3.05□□□□□ -1.92
CCDC39-204ENST00000476379 SACSQ9NZJ4 4579 aa3.05□□□□□ -1.92
CCDC39-204ENST00000476379 C8orf17Q9NRJ1 99 aa3.05□□□□□ -1.92
CCDC39-204ENST00000476379 DNAH2Q9P225 4427 aa3.04□□□□□ -1.92
CCDC39-204ENST00000476379 A0A087WTM6 91 aa3.04□□□□□ -1.92
CCDC39-204ENST00000476379 SSBP3-AS1Q7Z2R9 100 aa3.03□□□□□ -1.92
CCDC39-204ENST00000476379 Q96NJ1 140 aa3.03□□□□□ -1.92
CCDC39-204ENST00000476379 LIMD2Q9BT23 127 aa3.03□□□□□ -1.92
CCDC39-204ENST00000476379 CRIPTQ9P021 101 aa3.03□□□□□ -1.92
CCDC39-204ENST00000476379 MRPL34Q9BQ48 92 aaKnown RBP3.03□□□□□ -1.93
CCDC39-204ENST00000476379 PLA2G1BP04054 148 aaKnown RBP3.02□□□□□ -1.93
CCDC39-204ENST00000476379 TLX1NBP0CAT3 122 aa3.02□□□□□ -1.93
CCDC39-204ENST00000476379 SPRR4Q96PI1 79 aa3.02□□□□□ -1.93
CCDC39-204ENST00000476379 KRTAP4-16G5E9R7 235 aaPredicted RBP3.02□□□□□ -1.93
CCDC39-204ENST00000476379 ATP11AUNQ6ZP68 121 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 MYCBP2O75592 4640 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 A0A1B0GU69 56 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 SPRR1AP35321 89 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 LINC00313P59037 77 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 A0A1B0GVX0 72 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 SPINK7P58062 85 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 MMP24-AS1A0A0U1RRL7 71 aa3.01□□□□□ -1.93
CCDC39-204ENST00000476379 FAT3Q8TDW7 4589 aa3□□□□□ -1.93
CCDC39-204ENST00000476379 IGLV7-46A0A075B6I9 117 aa3□□□□□ -1.93
CCDC39-204ENST00000476379 ZNF861PO60384 105 aa3□□□□□ -1.93
CCDC39-204ENST00000476379 DNAH5Q8TE73 4624 aa3□□□□□ -1.93
CCDC39-204ENST00000476379 Q5VV11 94 aa2.99□□□□□ -1.93
CCDC39-204ENST00000476379 TYMSOSQ8TAI1 123 aa2.99□□□□□ -1.93
CCDC39-204ENST00000476379 LINC00472Q9H8W2 130 aa2.99□□□□□ -1.93
CCDC39-204ENST00000476379 DNAH8Q96JB1 4490 aa2.99□□□□□ -1.93
CCDC39-204ENST00000476379 RYR1P21817 5038 aa2.98□□□□□ -1.93
CCDC39-204ENST00000476379 RYR2Q92736 4967 aa2.98□□□□□ -1.93
CCDC39-204ENST00000476379 Q5W150 140 aa2.98□□□□□ -1.93
CCDC39-204ENST00000476379 LOC101927531A0A1B0GV80 90 aa2.98□□□□□ -1.93
CCDC39-204ENST00000476379 KRTAP10-1P60331 282 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 LRP1BQ9NZR2 4599 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 HRES1P13985 223 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 FAT2Q9NYQ8 4349 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 IGLV7-43P04211 117 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 KRTAP21-3Q3LHN1 58 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 ACYP2P14621 99 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 ADM2Q7Z4H4 148 aa2.97□□□□□ -1.93
CCDC39-204ENST00000476379 LRP1Q07954 4544 aaKnown RBP2.96□□□□□ -1.93
CCDC39-204ENST00000476379 VPS13BQ7Z7G8 4022 aa2.96□□□□□ -1.93
CCDC39-204ENST00000476379 CDC42SE1Q9NRR8 79 aa2.96□□□□□ -1.94
CCDC39-204ENST00000476379 IGLV5-37A0A075B6J1 123 aa2.96□□□□□ -1.94
CCDC39-204ENST00000476379 DYNC1H1Q14204 4646 aaKnown RBP2.96□□□□□ -1.94
CCDC39-204ENST00000476379 A0A0D9SG42 100 aa2.95□□□□□ -1.94
CCDC39-204ENST00000476379 LCE6AA0A183 80 aa2.95□□□□□ -1.94
CCDC39-204ENST00000476379 TP53AIP1Q9HCN2 124 aa2.95□□□□□ -1.94
CCDC39-204ENST00000476379 MIR22HGQ0VDD5 57 aa2.94□□□□□ -1.94
CCDC39-204ENST00000476379 APOBP04114 4563 aaKnown RBP2.94□□□□□ -1.94
CCDC39-204ENST00000476379 KRTAP29-1A8MX34 341 aaPredicted RBP2.93□□□□□ -1.94
CCDC39-204ENST00000476379 Q1T7F1 81 aa2.93□□□□□ -1.94
CCDC39-204ENST00000476379 DYNC2H1Q8NCM8 4307 aaKnown RBP2.93□□□□□ -1.94
CCDC39-204ENST00000476379 Q6ZRN7 208 aaPredicted RBP2.93□□□□□ -1.94
CCDC39-204ENST00000476379 ZCCHC13Q8WW36 166 aaKnown RBP2.93□□□□□ -1.94
CCDC39-204ENST00000476379 DNAH17Q9UFH2 4485 aa2.92□□□□□ -1.94
CCDC39-204ENST00000476379 A0A1B0GW54 56 aa2.92□□□□□ -1.94
CCDC39-204ENST00000476379 Q6ZR54 194 aa2.92□□□□□ -1.94
CCDC39-204ENST00000476379 CAMK2N1Q7Z7J9 78 aa2.92□□□□□ -1.94
CCDC39-204ENST00000476379 CYP4F30PQ9H0H9 118 aa2.92□□□□□ -1.94
CCDC39-204ENST00000476379 H3BPC8 53 aa2.91□□□□□ -1.94
CCDC39-204ENST00000476379 KRTAP4-5Q9BYR2 181 aa2.9□□□□□ -1.94
CCDC39-204ENST00000476379 HERC1Q15751 4861 aa2.89□□□□□ -1.95
CCDC39-204ENST00000476379 KRTAP17-1Q9BYP8 105 aa2.89□□□□□ -1.95
CCDC39-204ENST00000476379 LINC00304Q8N9R0 145 aa2.89□□□□□ -1.95
CCDC39-204ENST00000476379 HECTD4Q9Y4D8 3996 aa2.89□□□□□ -1.95
CCDC39-204ENST00000476379 SPANXA2-OT1Q8N9U9 137 aa2.88□□□□□ -1.95
CCDC39-204ENST00000476379 UQCR11O14957 56 aa2.88□□□□□ -1.95
CCDC39-204ENST00000476379 SPATA8Q6RVD6 105 aa2.87□□□□□ -1.95
CCDC39-204ENST00000476379 HSPG2P98160 4391 aa2.87□□□□□ -1.95
CCDC39-204ENST00000476379 ABCA13Q86UQ4 5058 aa2.87□□□□□ -1.95
CCDC39-204ENST00000476379 NDUFAF8A1L188 74 aa2.87□□□□□ -1.95
CCDC39-204ENST00000476379 HERC2O95714 4834 aa2.87□□□□□ -1.95
CCDC39-204ENST00000476379 CSAG1Q6PB30 78 aa2.86□□□□□ -1.95
CCDC39-204ENST00000476379 PLAC8Q9NZF1 115 aa2.86□□□□□ -1.95
CCDC39-204ENST00000476379 SPRR1BP22528 89 aa2.86□□□□□ -1.95
CCDC39-204ENST00000476379 KRTAP13-2Q52LG2 175 aa2.85□□□□□ -1.95
CCDC39-204ENST00000476379 Q75L30 129 aa2.85□□□□□ -1.95
CCDC39-204ENST00000476379 PCLOQ9Y6V0 5065 aa2.85□□□□□ -1.95
CCDC39-204ENST00000476379 RNF213Q63HN8 5207 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms