RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 NDUFA4O00483 81 aa-3.81□□□□□ -3.02
PRPF40A-207ENST00000471701 WT1-ASQ06250 92 aa-3.81□□□□□ -3.02
PRPF40A-207ENST00000471701 ZC3H13Q5T200 1668 aaKnown RBP-3.81□□□□□ -3.02
PRPF40A-207ENST00000471701 IFI27P40305 119 aaPredicted RBP-3.82□□□□□ -3.02
PRPF40A-207ENST00000471701 LY75O60449 1722 aa-3.82□□□□□ -3.02
PRPF40A-207ENST00000471701 URB2Q14146 1524 aaKnown RBP-3.83□□□□□ -3.02
PRPF40A-207ENST00000471701 CNTLNQ9NXG0 1405 aa-3.83□□□□□ -3.02
PRPF40A-207ENST00000471701 CCNB3Q8WWL7 1395 aa-3.83□□□□□ -3.02
PRPF40A-207ENST00000471701 C14orf144Q96I85 54 aa-3.83□□□□□ -3.02
PRPF40A-207ENST00000471701 KIAA0586Q9BVV6 1533 aa-3.84□□□□□ -3.02
PRPF40A-207ENST00000471701 CEP162Q5TB80 1403 aa-3.84□□□□□ -3.02
PRPF40A-207ENST00000471701 CDC42BPGQ6DT37 1551 aa-3.85□□□□□ -3.03
PRPF40A-207ENST00000471701 THOC2Q8NI27 1593 aaKnown RBP-3.85□□□□□ -3.03
PRPF40A-207ENST00000471701 ANKRD26Q9UPS8 1709 aa-3.86□□□□□ -3.03
PRPF40A-207ENST00000471701 KIF1AQ12756 1690 aa-3.86□□□□□ -3.03
PRPF40A-207ENST00000471701 CEBPZOSA8MTT3 80 aa-3.86□□□□□ -3.03
PRPF40A-207ENST00000471701 UMAD1C9J7I0 102 aa-3.86□□□□□ -3.03
PRPF40A-207ENST00000471701 RBP2P50120 134 aa-3.87□□□□□ -3.03
PRPF40A-207ENST00000471701 MT1MQ8N339 61 aa-3.87□□□□□ -3.03
PRPF40A-207ENST00000471701 CCDC88BA6NC98 1476 aa-3.87□□□□□ -3.03
PRPF40A-207ENST00000471701 GYPAP02724 150 aa-3.88□□□□□ -3.03
PRPF40A-207ENST00000471701 RABAC1Q9UI14 185 aa-3.88□□□□□ -3.03
PRPF40A-207ENST00000471701 PIK3C2BO00750 1634 aa-3.88□□□□□ -3.03
PRPF40A-207ENST00000471701 NCMAPQ5T1S8 102 aa-3.89□□□□□ -3.03
PRPF40A-207ENST00000471701 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-3.9□□□□□ -3.03
PRPF40A-207ENST00000471701 DEFB131BA0A096LNP1 70 aa-3.91□□□□□ -3.04
PRPF40A-207ENST00000471701 MT2AP02795 61 aa-3.91□□□□□ -3.04
PRPF40A-207ENST00000471701 TJP1Q07157 1748 aa-3.91□□□□□ -3.04
PRPF40A-207ENST00000471701 ATP6V1G2-DDX39BF2Z307 99 aa-3.92□□□□□ -3.04
PRPF40A-207ENST00000471701 RICTORQ6R327 1708 aa-3.92□□□□□ -3.04
PRPF40A-207ENST00000471701 ITPR2Q14571 2701 aa-3.93□□□□□ -3.04
PRPF40A-207ENST00000471701 RPS27P42677 84 aaKnown RBP-3.93□□□□□ -3.04
PRPF40A-207ENST00000471701 RPS27LQ71UM5 84 aaKnown RBP-3.93□□□□□ -3.04
PRPF40A-207ENST00000471701 S100PP25815 95 aa-3.94□□□□□ -3.04
PRPF40A-207ENST00000471701 ACBD7Q8N6N7 88 aa-3.94□□□□□ -3.04
PRPF40A-207ENST00000471701 CSMD2Q7Z408 3487 aa-3.95□□□□□ -3.04
PRPF40A-207ENST00000471701 ATMQ13315 3056 aa-3.95□□□□□ -3.04
PRPF40A-207ENST00000471701 MAST1Q9Y2H9 1570 aa-3.96□□□□□ -3.04
PRPF40A-207ENST00000471701 TLN1Q9Y490 2541 aaKnown RBP-3.96□□□□□ -3.04
PRPF40A-207ENST00000471701 TCEAL7Q9BRU2 100 aa-3.96□□□□□ -3.04
PRPF40A-207ENST00000471701 NREPQ16612 68 aa-3.97□□□□□ -3.04
PRPF40A-207ENST00000471701 LINC00643Q86TS7 51 aa-3.97□□□□□ -3.04
PRPF40A-207ENST00000471701 CFAP43Q8NDM7 1665 aa-3.98□□□□□ -3.05
PRPF40A-207ENST00000471701 SNRPFP62306 86 aaKnown RBP-3.99□□□□□ -3.05
PRPF40A-207ENST00000471701 LRRIQ1Q96JM4 1722 aa-3.99□□□□□ -3.05
PRPF40A-207ENST00000471701 RNF17Q9BXT8 1623 aaKnown RBP-3.99□□□□□ -3.05
PRPF40A-207ENST00000471701 NRAPQ86VF7 1730 aa-4□□□□□ -3.05
PRPF40A-207ENST00000471701 AKAP12Q02952 1782 aa-4□□□□□ -3.05
PRPF40A-207ENST00000471701 MRPL33O75394 65 aaKnown RBP-4.01□□□□□ -3.05
PRPF40A-207ENST00000471701 CRIP1P50238 77 aa-4.02□□□□□ -3.05
PRPF40A-207ENST00000471701 M0R143 59 aa-4.04□□□□□ -3.06
PRPF40A-207ENST00000471701 BVES-AS1Q5T3Y7 98 aa-4.04□□□□□ -3.06
PRPF40A-207ENST00000471701 NOP10Q9NPE3 64 aaKnown RBP-4.04□□□□□ -3.06
PRPF40A-207ENST00000471701 MINOS1Q5TGZ0 78 aa-4.05□□□□□ -3.06
PRPF40A-207ENST00000471701 MT1BP07438 61 aa-4.06□□□□□ -3.06
PRPF40A-207ENST00000471701 ARHGAP35Q9NRY4 1499 aa-4.06□□□□□ -3.06
PRPF40A-207ENST00000471701 NCBP2-AS2Q69YL0 99 aa-4.08□□□□□ -3.06
PRPF40A-207ENST00000471701 SNHG12Q9BXW3 62 aa-4.08□□□□□ -3.06
PRPF40A-207ENST00000471701 KIF14Q15058 1648 aa-4.09□□□□□ -3.06
PRPF40A-207ENST00000471701 HFM1A2PYH4 1435 aa-4.09□□□□□ -3.06
PRPF40A-207ENST00000471701 H3BUA1 57 aa-4.09□□□□□ -3.06
PRPF40A-207ENST00000471701 KCNQ1DNQ9H478 68 aa-4.09□□□□□ -3.06
PRPF40A-207ENST00000471701 INO80Q9ULG1 1556 aaPredicted RBP-4.1□□□□□ -3.07
PRPF40A-207ENST00000471701 LINC01546A6NGU7 62 aa-4.11□□□□□ -3.07
PRPF40A-207ENST00000471701 MAP3K4Q9Y6R4 1608 aa-4.11□□□□□ -3.07
PRPF40A-207ENST00000471701 S100A16Q96FQ6 103 aaKnown RBP-4.12□□□□□ -3.07
PRPF40A-207ENST00000471701 SFTA3P0C7M3 94 aa-4.13□□□□□ -3.07
PRPF40A-207ENST00000471701 UBL5Q9BZL1 73 aa-4.13□□□□□ -3.07
PRPF40A-207ENST00000471701 SMARCA2P51531 1590 aa-4.14□□□□□ -3.07
PRPF40A-207ENST00000471701 PYY3Q5JQD4 70 aa-4.14□□□□□ -3.07
PRPF40A-207ENST00000471701 PVALEFA0A1B0GWK0 134 aa-4.15□□□□□ -3.07
PRPF40A-207ENST00000471701 A0A1B0GUL6 1792 aa-4.15□□□□□ -3.07
PRPF40A-207ENST00000471701 ATP5EP2Q5VTU8 51 aa-4.16□□□□□ -3.08
PRPF40A-207ENST00000471701 FCER1GP30273 86 aa-4.17□□□□□ -3.08
PRPF40A-207ENST00000471701 C6orf48Q9UBA6 75 aa-4.18□□□□□ -3.08
PRPF40A-207ENST00000471701 RALGAPBQ86X10 1494 aa-4.18□□□□□ -3.08
PRPF40A-207ENST00000471701 HMGA1P17096 107 aaKnown RBP-4.19□□□□□ -3.08
PRPF40A-207ENST00000471701 A0A087WXM4 84 aa-4.2□□□□□ -3.08
PRPF40A-207ENST00000471701 DEFB4AO15263 64 aa-4.2□□□□□ -3.08
PRPF40A-207ENST00000471701 PPLO60437 1756 aa-4.2□□□□□ -3.08
PRPF40A-207ENST00000471701 NHSQ6T4R5 1651 aa-4.21□□□□□ -3.08
PRPF40A-207ENST00000471701 M0QY20 66 aa-4.21□□□□□ -3.08
PRPF40A-207ENST00000471701 FREM2Q5SZK8 3169 aa-4.21□□□□□ -3.08
PRPF40A-207ENST00000471701 KDM5DQ9BY66 1539 aa-4.22□□□□□ -3.09
PRPF40A-207ENST00000471701 M0QZ58 72 aa-4.23□□□□□ -3.09
PRPF40A-207ENST00000471701 SMIM13P0DJ93 91 aa-4.23□□□□□ -3.09
PRPF40A-207ENST00000471701 ABCC3O15438 1527 aa-4.23□□□□□ -3.09
PRPF40A-207ENST00000471701 BOD1L1Q8NFC6 3051 aa-4.23□□□□□ -3.09
PRPF40A-207ENST00000471701 PKIAP61925 76 aa-4.25□□□□□ -3.09
PRPF40A-207ENST00000471701 VPS8Q8N3P4 1428 aa-4.25□□□□□ -3.09
PRPF40A-207ENST00000471701 ERVK-7P63135 1459 aa-4.25□□□□□ -3.09
PRPF40A-207ENST00000471701 MYO5CQ9NQX4 1742 aa-4.26□□□□□ -3.09
PRPF40A-207ENST00000471701 CRYBG3Q68DQ2 2970 aa-4.26□□□□□ -3.09
PRPF40A-207ENST00000471701 TTC37Q6PGP7 1564 aa-4.27□□□□□ -3.09
PRPF40A-207ENST00000471701 PRUNE2Q8WUY3 3088 aa-4.27□□□□□ -3.09
PRPF40A-207ENST00000471701 EIF2AK4Q9P2K8 1649 aaKnown RBP-4.28□□□□□ -3.09
PRPF40A-207ENST00000471701 KRTAP20-1Q3LI63 56 aa-4.28□□□□□ -3.09
PRPF40A-207ENST00000471701 ETDCA0A1B0GVM5 59 aa-4.29□□□□□ -3.1
PRPF40A-207ENST00000471701 KANTRA0A1W2PQU2 76 aa-4.3□□□□□ -3.1
PRPF40A-207ENST00000471701 ZFHX4Q86UP3 3567 aa-4.3□□□□□ -3.1
Retrieved 100 of 20,778 RNA–protein pairs in 162.9 ms