RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 KMT2CQ8NEZ4 4911 aaKnown RBP3.41□□□□□ -1.86
SYNE1-219ENST00000469439 SACSQ9NZJ4 4579 aa3.41□□□□□ -1.86
SYNE1-219ENST00000469439 FRAS1Q86XX4 4008 aa3.41□□□□□ -1.86
SYNE1-219ENST00000469439 A0A087WSZ3 146 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 A0A087X002 238 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 BPY2O14599 106 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 CXCL6P80162 114 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 IMUPQ9GZP8 106 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 ANAPC11Q9NYG5 84 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 DNAH10Q8IVF4 4471 aa3.4□□□□□ -1.87
SYNE1-219ENST00000469439 RYR3Q15413 4870 aa3.39□□□□□ -1.87
SYNE1-219ENST00000469439 DNAH2Q9P225 4427 aa3.39□□□□□ -1.87
SYNE1-219ENST00000469439 A0A1W2PNM2 257 aa3.39□□□□□ -1.87
SYNE1-219ENST00000469439 KRTAP13-2Q52LG2 175 aa3.39□□□□□ -1.87
SYNE1-219ENST00000469439 FP248Q71RG6 208 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-219ENST00000469439 HECTD4Q9Y4D8 3996 aa3.39□□□□□ -1.87
SYNE1-219ENST00000469439 KRTAP10-8P60410 259 aa3.38□□□□□ -1.87
SYNE1-219ENST00000469439 Q6ZVQ6 151 aa3.38□□□□□ -1.87
SYNE1-219ENST00000469439 FAT2Q9NYQ8 4349 aa3.37□□□□□ -1.87
SYNE1-219ENST00000469439 HRCT1Q6UXD1 115 aa3.37□□□□□ -1.87
SYNE1-219ENST00000469439 LINC00846Q9NV44 126 aa3.37□□□□□ -1.87
SYNE1-219ENST00000469439 C8orf87E5RJ46 101 aa3.36□□□□□ -1.87
SYNE1-219ENST00000469439 IGKV4-1P06312 121 aa3.36□□□□□ -1.87
SYNE1-219ENST00000469439 KRTAP5-9P26371 169 aa3.36□□□□□ -1.87
SYNE1-219ENST00000469439 HYDINQ4G0P3 5121 aa3.36□□□□□ -1.87
SYNE1-219ENST00000469439 PKD1P98161 4303 aa3.35□□□□□ -1.87
SYNE1-219ENST00000469439 RYR2Q92736 4967 aa3.35□□□□□ -1.87
SYNE1-219ENST00000469439 A8MWP4 228 aa3.35□□□□□ -1.87
SYNE1-219ENST00000469439 LINC00472Q9H8W2 130 aa3.34□□□□□ -1.87
SYNE1-219ENST00000469439 HIST1H4AP62805 103 aaKnown RBP3.33□□□□□ -1.88
SYNE1-219ENST00000469439 SMIM20Q8N5G0 67 aa3.33□□□□□ -1.88
SYNE1-219ENST00000469439 PKHD1P08F94 4074 aa3.33□□□□□ -1.88
SYNE1-219ENST00000469439 BIRC6Q9NR09 4857 aa3.32□□□□□ -1.88
SYNE1-219ENST00000469439 SCGB1A1P11684 91 aa3.32□□□□□ -1.88
SYNE1-219ENST00000469439 C1orf195Q5TG92 126 aa3.32□□□□□ -1.88
SYNE1-219ENST00000469439 PRR15Q8IV56 129 aa3.32□□□□□ -1.88
SYNE1-219ENST00000469439 DNAH11Q96DT5 4516 aa3.32□□□□□ -1.88
SYNE1-219ENST00000469439 LRP1BQ9NZR2 4599 aa3.31□□□□□ -1.88
SYNE1-219ENST00000469439 A0A1B0GVX0 72 aa3.31□□□□□ -1.88
SYNE1-219ENST00000469439 LINC00313P59037 77 aa3.31□□□□□ -1.88
SYNE1-219ENST00000469439 DNAH5Q8TE73 4624 aa3.31□□□□□ -1.88
SYNE1-219ENST00000469439 A0A0G2JQZ4 141 aa3.3□□□□□ -1.88
SYNE1-219ENST00000469439 TP53AIP1Q9HCN2 124 aa3.3□□□□□ -1.88
SYNE1-219ENST00000469439 IGLV7-46A0A075B6I9 117 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 IGHV6-1A0A0B4J1U7 121 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 IGKV3D-7A0A0C4DH55 119 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 hDV103S1A0JD37 113 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 HCG22E2RYF7 251 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 MT1HL1P0DM35 61 aa3.29□□□□□ -1.88
SYNE1-219ENST00000469439 EPPK1P58107 5090 aaKnown RBP3.29□□□□□ -1.88
SYNE1-219ENST00000469439 PRR4Q16378 134 aa3.28□□□□□ -1.88
SYNE1-219ENST00000469439 CASC2Q6XLA1 102 aa3.28□□□□□ -1.88
SYNE1-219ENST00000469439 VPS13BQ7Z7G8 4022 aa3.28□□□□□ -1.88
SYNE1-219ENST00000469439 SRRM2Q9UQ35 2752 aaKnown RBP3.28□□□□□ -1.89
SYNE1-219ENST00000469439 DNAH8Q96JB1 4490 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 ATOX1O00244 68 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 DSCR10P59022 87 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 DEFB116Q30KQ4 102 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 TMEM254Q8TBM7 123 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 Q96NJ1 140 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 C8orf17Q9NRJ1 99 aa3.27□□□□□ -1.89
SYNE1-219ENST00000469439 DYNC1H1Q14204 4646 aaKnown RBP3.27□□□□□ -1.89
SYNE1-219ENST00000469439 K7EQZ3 153 aa3.26□□□□□ -1.89
SYNE1-219ENST00000469439 TPRXLQ17RH7 258 aa3.26□□□□□ -1.89
SYNE1-219ENST00000469439 MRPL34Q9BQ48 92 aaKnown RBP3.26□□□□□ -1.89
SYNE1-219ENST00000469439 NDUFS5O43920 106 aa3.25□□□□□ -1.89
SYNE1-219ENST00000469439 MT-ATP8P03928 68 aa3.25□□□□□ -1.89
SYNE1-219ENST00000469439 H3BPC8 53 aa3.24□□□□□ -1.89
SYNE1-219ENST00000469439 UQCRQO14949 82 aa3.24□□□□□ -1.89
SYNE1-219ENST00000469439 ATP11AUNQ6ZP68 121 aa3.24□□□□□ -1.89
SYNE1-219ENST00000469439 DMBT1Q9UGM3 2413 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-219ENST00000469439 FLG2Q5D862 2391 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-219ENST00000469439 MP68P56378 58 aa3.23□□□□□ -1.89
SYNE1-219ENST00000469439 C5orf47Q569G3 176 aa3.23□□□□□ -1.89
SYNE1-219ENST00000469439 APOBP04114 4563 aaKnown RBP3.23□□□□□ -1.89
SYNE1-219ENST00000469439 MMP24-AS1A0A0U1RRL7 71 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 FAM236AA0A1B0GUQ0 79 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 FAM236BA0A1B0GV22 79 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 WFDC13Q8IUB5 93 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 PRAC1Q96KF2 57 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 RETNLBQ9BQ08 111 aa3.22□□□□□ -1.89
SYNE1-219ENST00000469439 HSPG2P98160 4391 aa3.21□□□□□ -1.89
SYNE1-219ENST00000469439 TRAV7A0A075B6U4 112 aa3.21□□□□□ -1.9
SYNE1-219ENST00000469439 Q8N9L7 120 aa3.21□□□□□ -1.9
SYNE1-219ENST00000469439 C20orf166-AS1Q96NR2 134 aa3.21□□□□□ -1.9
SYNE1-219ENST00000469439 KRTAP13-3Q3SY46 172 aa3.2□□□□□ -1.9
SYNE1-219ENST00000469439 RYR1P21817 5038 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 A0A087WVE0 104 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 TRAV22A0A0B4J277 110 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 C9orf92A6NGG3 77 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 A8MUU9 505 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 SERP2Q8N6R1 65 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 ANAPC13Q9BS18 74 aa3.19□□□□□ -1.9
SYNE1-219ENST00000469439 PCLOQ9Y6V0 5065 aa3.18□□□□□ -1.9
SYNE1-219ENST00000469439 LOC101927531A0A1B0GV80 90 aa3.18□□□□□ -1.9
SYNE1-219ENST00000469439 FAT1Q14517 4588 aa3.17□□□□□ -1.9
SYNE1-219ENST00000469439 NDUFC1O43677 76 aa3.17□□□□□ -1.9
SYNE1-219ENST00000469439 RPL37P61927 97 aaKnown RBP3.17□□□□□ -1.9
SYNE1-219ENST00000469439 ZCCHC13Q8WW36 166 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms