RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 RNASE3P12724 160 aaKnown RBP1.96□□□□□ -2.1
HMGB1-207ENST00000468384 ADCYAP1P18509 176 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 MIR22HGQ0VDD5 57 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 SSBP3-AS1Q7Z2R9 100 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 C9orf62Q8N4C0 152 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 CMTM2Q8TAZ6 248 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 SNCGO76070 127 aa1.95□□□□□ -2.1
HMGB1-207ENST00000468384 TIMM21Q9BVV7 248 aa1.95□□□□□ -2.1
HMGB1-207ENST00000468384 Q9H521 79 aa1.95□□□□□ -2.1
HMGB1-207ENST00000468384 NDUFB6O95139 128 aa1.94□□□□□ -2.1
HMGB1-207ENST00000468384 NPC2P61916 151 aa1.94□□□□□ -2.1
HMGB1-207ENST00000468384 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
HMGB1-207ENST00000468384 S100A7L2Q5SY68 101 aa1.94□□□□□ -2.1
HMGB1-207ENST00000468384 C2orf82Q6UX34 121 aa1.93□□□□□ -2.1
HMGB1-207ENST00000468384 CYP2G1PQ6ZSU1 146 aa1.93□□□□□ -2.1
HMGB1-207ENST00000468384 KRTAP19-3Q7Z4W3 81 aa1.93□□□□□ -2.1
HMGB1-207ENST00000468384 Q8N8P6 123 aa1.93□□□□□ -2.1
HMGB1-207ENST00000468384 C6orf48Q9UBA6 75 aa1.93□□□□□ -2.1
HMGB1-207ENST00000468384 LINC00959A0A1B0GUT2 108 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 TCRBV3S1A0A5B6 114 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 SDHAF1A6NFY7 115 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 SPAG11BQ08648 103 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 SPANXN1Q5VSR9 72 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 LIMD2Q9BT23 127 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 LENEPQ9Y5L5 61 aa1.92□□□□□ -2.1
HMGB1-207ENST00000468384 GNGT2O14610 69 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 MT-ATP8P03928 68 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 MT1XP80297 61 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 PDE6HQ13956 83 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 UNQ6190/PRO20217Q6UXQ8 127 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 Q86TA4 180 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 PRO1933Q9H354 126 aa1.91□□□□□ -2.1
HMGB1-207ENST00000468384 NDUFA1O15239 70 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 IL7P13232 177 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 UBE2G1P62253 170 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 Q1T7F1 81 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 TMEM141Q96I45 108 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 VAMP8Q9BV40 100 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 SCP2D1Q9UJQ7 156 aa1.9□□□□□ -2.11
HMGB1-207ENST00000468384 IGKCP01834 107 aa1.89□□□□□ -2.11
HMGB1-207ENST00000468384 SLC25A6P12236 298 aa1.89□□□□□ -2.11
HMGB1-207ENST00000468384 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-207ENST00000468384 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
HMGB1-207ENST00000468384 FXYD6Q9H0Q3 95 aa1.89□□□□□ -2.11
HMGB1-207ENST00000468384 KRTAP12-4P60329 112 aa1.88□□□□□ -2.11
HMGB1-207ENST00000468384 PYY3Q5JQD4 70 aa1.88□□□□□ -2.11
HMGB1-207ENST00000468384 C5orf38Q86SI9 138 aa1.88□□□□□ -2.11
HMGB1-207ENST00000468384 AP4S1Q9Y587 144 aa1.88□□□□□ -2.11
HMGB1-207ENST00000468384 UBE2L5PA0A1B0GUS4 154 aa1.87□□□□□ -2.11
HMGB1-207ENST00000468384 F8W1H4 67 aa1.87□□□□□ -2.11
HMGB1-207ENST00000468384 COX7CP15954 63 aa1.87□□□□□ -2.11
HMGB1-207ENST00000468384 UBE2L3P68036 154 aaKnown RBP1.87□□□□□ -2.11
HMGB1-207ENST00000468384 ZNF56Q15929 161 aa1.87□□□□□ -2.11
HMGB1-207ENST00000468384 RPL7L1Q6DKI1 246 aaKnown RBP1.87□□□□□ -2.11
HMGB1-207ENST00000468384 CSAG1Q6PB30 78 aa1.87□□□□□ -2.11
HMGB1-207ENST00000468384 SPTSSBQ8NFR3 76 aa1.86□□□□□ -2.11
HMGB1-207ENST00000468384 PPDPFLQ8WWR9 84 aa1.86□□□□□ -2.11
HMGB1-207ENST00000468384 ATG5Q9H1Y0 275 aa1.86□□□□□ -2.11
HMGB1-207ENST00000468384 ATP5EP56381 51 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-207ENST00000468384 OR10AG1Q8NH19 301 aa1.85□□□□□ -2.11
HMGB1-207ENST00000468384 ORMDL1Q9P0S3 153 aa1.85□□□□□ -2.11
HMGB1-207ENST00000468384 SSSCA1O60232 199 aa1.84□□□□□ -2.11
HMGB1-207ENST00000468384 C10orf113Q5VZT2 155 aa1.84□□□□□ -2.11
HMGB1-207ENST00000468384 CACFD1Q9UGQ2 172 aa1.84□□□□□ -2.11
HMGB1-207ENST00000468384 PIGBOS1A0A0B4J2F0 54 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 hADV29S1A0JD25 119 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 H3BRM9 83 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 H3BVH4 76 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 CCKP06307 115 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 IFI27L1Q96BM0 104 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 PMCHL2Q9BQD1 86 aa1.83□□□□□ -2.12
HMGB1-207ENST00000468384 TRAV13-2A0A0B4J235 113 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 TRBV30A0A0K0K1B3 111 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 TRBV10-3A0A0K0K1G6 114 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 HCG22E2RYF7 251 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 FAM74A1Q5RGS3 127 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 CDC42SE1Q9NRR8 79 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 TMEM14CQ9P0S9 112 aa1.82□□□□□ -2.12
HMGB1-207ENST00000468384 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
HMGB1-207ENST00000468384 IGKV4-1P06312 121 aa1.81□□□□□ -2.12
HMGB1-207ENST00000468384 ARMS2P0C7Q2 107 aa1.81□□□□□ -2.12
HMGB1-207ENST00000468384 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-207ENST00000468384 IGKV2-29A2NJV5 120 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-207ENST00000468384 IAPPP10997 89 aa1.8□□□□□ -2.12
HMGB1-207ENST00000468384 FAM213BQ8TBF2 198 aa1.8□□□□□ -2.12
HMGB1-207ENST00000468384 DMAC1Q96GE9 116 aa1.8□□□□□ -2.12
HMGB1-207ENST00000468384 LINC00299Q6ZSB3 139 aa1.79□□□□□ -2.12
HMGB1-207ENST00000468384 JMJD7-PLA2G4BH0Y9G9 81 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 H0YAA0 97 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 K7EP34 96 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 DNAL4O96015 105 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 SEC11AP67812 179 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 COA5Q86WW8 74 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 NMES1Q9C002 83 aa1.78□□□□□ -2.12
HMGB1-207ENST00000468384 TRBV6-5A0A0K0K1A5 114 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 TEX49A0A1B0GTD5 131 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 SIX6O95475 246 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 MT1GP13640 62 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 FAUP35544 74 aaKnown RBP1.77□□□□□ -2.13
HMGB1-207ENST00000468384 C20orf78Q9BR46 151 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms