RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 PSORS1C2Q9UIG4 136 aa4.82□□□□□ -1.64
USP54-210ENST00000466048 FAM229BQ4G0N7 80 aa4.82□□□□□ -1.64
USP54-210ENST00000466048 STAB2Q8WWQ8 2551 aa4.81□□□□□ -1.64
USP54-210ENST00000466048 ANK2Q01484 3957 aa4.81□□□□□ -1.64
USP54-210ENST00000466048 LINC00304Q8N9R0 145 aa4.8□□□□□ -1.64
USP54-210ENST00000466048 DSCR10P59022 87 aa4.79□□□□□ -1.64
USP54-210ENST00000466048 HUWE1Q7Z6Z7 4374 aaKnown RBP4.79□□□□□ -1.64
USP54-210ENST00000466048 A0A1W2PNN7 141 aa4.78□□□□□ -1.64
USP54-210ENST00000466048 TENM3Q9P273 2699 aa4.78□□□□□ -1.64
USP54-210ENST00000466048 KRTAP4-16G5E9R7 235 aaPredicted RBP4.78□□□□□ -1.64
USP54-210ENST00000466048 Q6ZRN7 208 aaPredicted RBP4.78□□□□□ -1.64
USP54-210ENST00000466048 DMAC1Q96GE9 116 aa4.76□□□□□ -1.65
USP54-210ENST00000466048 PRR26Q8N8Z3 221 aa4.75□□□□□ -1.65
USP54-210ENST00000466048 PKD1L1Q8TDX9 2849 aa4.74□□□□□ -1.65
USP54-210ENST00000466048 KRTAP7-1Q8IUC3 87 aa4.73□□□□□ -1.65
USP54-210ENST00000466048 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.73□□□□□ -1.65
USP54-210ENST00000466048 LUZP6Q538Z0 58 aa4.72□□□□□ -1.65
USP54-210ENST00000466048 DNAH9Q9NYC9 4486 aa4.72□□□□□ -1.65
USP54-210ENST00000466048 Q5VSD8 79 aa4.71□□□□□ -1.66
USP54-210ENST00000466048 PRAC1Q96KF2 57 aa4.71□□□□□ -1.66
USP54-210ENST00000466048 SPRR1BP22528 89 aa4.7□□□□□ -1.66
USP54-210ENST00000466048 Q96NJ1 140 aa4.7□□□□□ -1.66
USP54-210ENST00000466048 KRTAP10-1P60331 282 aa4.69□□□□□ -1.66
USP54-210ENST00000466048 KRTAP10-2P60368 255 aa4.69□□□□□ -1.66
USP54-210ENST00000466048 DYNC2H1Q8NCM8 4307 aaKnown RBP4.69□□□□□ -1.66
USP54-210ENST00000466048 CSAG1Q6PB30 78 aa4.68□□□□□ -1.66
USP54-210ENST00000466048 ANAPC11Q9NYG5 84 aa4.68□□□□□ -1.66
USP54-210ENST00000466048 HRES1P13985 223 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 A0A0A0MQY5 61 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 SPINK7P58062 85 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 A0A087X002 238 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 MMP24-AS1A0A0U1RRL7 71 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 A0A1B0GU33 70 aa4.67□□□□□ -1.66
USP54-210ENST00000466048 ZCCHC13Q8WW36 166 aaKnown RBP4.67□□□□□ -1.66
USP54-210ENST00000466048 COX6B2Q6YFQ2 88 aa4.65□□□□□ -1.66
USP54-210ENST00000466048 A6NN06 94 aa4.65□□□□□ -1.67
USP54-210ENST00000466048 KRTAP13-1Q8IUC0 172 aa4.63□□□□□ -1.67
USP54-210ENST00000466048 DNAH1Q9P2D7 4330 aa4.63□□□□□ -1.67
USP54-210ENST00000466048 A0A0G2JQZ4 141 aa4.63□□□□□ -1.67
USP54-210ENST00000466048 LINC00483Q53H64 154 aa4.62□□□□□ -1.67
USP54-210ENST00000466048 PANO1I0J062 215 aa4.62□□□□□ -1.67
USP54-210ENST00000466048 LINC00472Q9H8W2 130 aa4.61□□□□□ -1.67
USP54-210ENST00000466048 C9orf92A6NGG3 77 aa4.61□□□□□ -1.67
USP54-210ENST00000466048 KRTAP11-1Q8IUC1 163 aa4.6□□□□□ -1.67
USP54-210ENST00000466048 Q8N1X5 172 aa4.6□□□□□ -1.67
USP54-210ENST00000466048 SPATA8Q6RVD6 105 aa4.59□□□□□ -1.67
USP54-210ENST00000466048 VPS13DQ5THJ4 4388 aa4.58□□□□□ -1.68
USP54-210ENST00000466048 KRTAP29-1A8MX34 341 aaPredicted RBP4.56□□□□□ -1.68
USP54-210ENST00000466048 ALMS1Q8TCU4 4167 aa4.56□□□□□ -1.68
USP54-210ENST00000466048 KRTAP16-1A8MUX0 517 aa4.56□□□□□ -1.68
USP54-210ENST00000466048 DNAH6Q9C0G6 4158 aa4.55□□□□□ -1.68
USP54-210ENST00000466048 RPS29P62273 56 aaKnown RBP4.55□□□□□ -1.68
USP54-210ENST00000466048 SEC61BP60468 96 aaKnown RBP4.55□□□□□ -1.68
USP54-210ENST00000466048 Q6ZSA8 131 aa4.55□□□□□ -1.68
USP54-210ENST00000466048 DNAH7Q8WXX0 4024 aa4.54□□□□□ -1.68
USP54-210ENST00000466048 PLECQ15149 4684 aaKnown RBP4.54□□□□□ -1.68
USP54-210ENST00000466048 DMBT1Q9UGM3 2413 aaPredicted RBP4.54□□□□□ -1.68
USP54-210ENST00000466048 ROMO1P60602 79 aa4.54□□□□□ -1.68
USP54-210ENST00000466048 A0A0D9SG42 100 aa4.53□□□□□ -1.68
USP54-210ENST00000466048 Q5W150 140 aa4.53□□□□□ -1.68
USP54-210ENST00000466048 COL7A1Q02388 2944 aa4.52□□□□□ -1.69
USP54-210ENST00000466048 RPL37P61927 97 aaKnown RBP4.51□□□□□ -1.69
USP54-210ENST00000466048 KRTAP25-1Q3LHN0 102 aa4.49□□□□□ -1.69
USP54-210ENST00000466048 PRKDCP78527 4128 aaKnown RBP4.49□□□□□ -1.69
USP54-210ENST00000466048 MEGF8Q7Z7M0 2845 aa4.49□□□□□ -1.69
USP54-210ENST00000466048 STARD9Q9P2P6 4700 aa4.48□□□□□ -1.69
USP54-210ENST00000466048 TENM2Q9NT68 2774 aa4.48□□□□□ -1.69
USP54-210ENST00000466048 DNAH17Q9UFH2 4485 aa4.48□□□□□ -1.69
USP54-210ENST00000466048 DNAH10Q8IVF4 4471 aa4.46□□□□□ -1.69
USP54-210ENST00000466048 H1FX-AS1Q4G0G2 97 aa4.46□□□□□ -1.7
USP54-210ENST00000466048 FLG2Q5D862 2391 aaPredicted RBP4.46□□□□□ -1.7
USP54-210ENST00000466048 M0R2T5 61 aa4.44□□□□□ -1.7
USP54-210ENST00000466048 DNHD1Q96M86 4753 aa4.44□□□□□ -1.7
USP54-210ENST00000466048 FBN3Q75N90 2809 aa4.44□□□□□ -1.7
USP54-210ENST00000466048 DNAH2Q9P225 4427 aa4.43□□□□□ -1.7
USP54-210ENST00000466048 CSMD3Q7Z407 3707 aa4.42□□□□□ -1.7
USP54-210ENST00000466048 A0A1B0GVY2 172 aa4.41□□□□□ -1.7
USP54-210ENST00000466048 KRTAP13-2Q52LG2 175 aa4.38□□□□□ -1.71
USP54-210ENST00000466048 DNAH8Q96JB1 4490 aa4.37□□□□□ -1.71
USP54-210ENST00000466048 TGP01266 2768 aa4.37□□□□□ -1.71
USP54-210ENST00000466048 KRTAP1-4P0C5Y4 121 aa4.37□□□□□ -1.71
USP54-210ENST00000466048 CAMK2N1Q7Z7J9 78 aa4.36□□□□□ -1.71
USP54-210ENST00000466048 ADM2Q7Z4H4 148 aa4.36□□□□□ -1.71
USP54-210ENST00000466048 LYSTQ99698 3801 aa4.36□□□□□ -1.71
USP54-210ENST00000466048 A8MU10 97 aa4.36□□□□□ -1.71
USP54-210ENST00000466048 HECTD4Q9Y4D8 3996 aa4.35□□□□□ -1.71
USP54-210ENST00000466048 S4R3F8 94 aa4.35□□□□□ -1.71
USP54-210ENST00000466048 DNAH11Q96DT5 4516 aa4.33□□□□□ -1.72
USP54-210ENST00000466048 NDUFAF8A1L188 74 aa4.33□□□□□ -1.72
USP54-210ENST00000466048 KMT2AQ03164 3969 aa4.32□□□□□ -1.72
USP54-210ENST00000466048 FRAS1Q86XX4 4008 aa4.29□□□□□ -1.72
USP54-210ENST00000466048 DNAH5Q8TE73 4624 aa4.29□□□□□ -1.72
USP54-210ENST00000466048 R4GN34 69 aa4.27□□□□□ -1.73
USP54-210ENST00000466048 A8MUU9 505 aa4.27□□□□□ -1.73
USP54-210ENST00000466048 NOTCH2NLQ7Z3S9 236 aa4.26□□□□□ -1.73
USP54-210ENST00000466048 C20orf166-AS1Q96NR2 134 aa4.25□□□□□ -1.73
USP54-210ENST00000466048 TPRXLQ17RH7 258 aa4.24□□□□□ -1.73
USP54-210ENST00000466048 FAT2Q9NYQ8 4349 aa4.24□□□□□ -1.73
USP54-210ENST00000466048 PKD1P98161 4303 aa4.23□□□□□ -1.73
USP54-210ENST00000466048 KRTAP10-4P60372 401 aaPredicted RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms