RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 LCE2DQ5TA82 110 aaPredicted RBP9.54□□□□□ -0.88
COL7A1-205ENST00000465238 J3KT08 172 aa9.52□□□□□ -0.89
COL7A1-205ENST00000465238 PCOTHQ58A44 107 aa9.52□□□□□ -0.89
COL7A1-205ENST00000465238 LCE2CQ5TA81 110 aa9.52□□□□□ -0.89
COL7A1-205ENST00000465238 RPL37P61927 97 aaKnown RBP9.51□□□□□ -0.89
COL7A1-205ENST00000465238 F8W1H4 67 aa9.5□□□□□ -0.89
COL7A1-205ENST00000465238 DSCR10P59022 87 aa9.5□□□□□ -0.89
COL7A1-205ENST00000465238 NREPQ16612 68 aa9.5□□□□□ -0.89
COL7A1-205ENST00000465238 LINC00313P59037 77 aa9.49□□□□□ -0.89
COL7A1-205ENST00000465238 KRTAP19-2Q3LHN2 52 aa9.48□□□□□ -0.89
COL7A1-205ENST00000465238 IGHV6-1A0A0B4J1U7 121 aa9.47□□□□□ -0.89
COL7A1-205ENST00000465238 A0A1B0GVX0 72 aa9.45□□□□□ -0.9
COL7A1-205ENST00000465238 NDUFB1O75438 58 aa9.45□□□□□ -0.9
COL7A1-205ENST00000465238 Q75L30 129 aa9.45□□□□□ -0.9
COL7A1-205ENST00000465238 C8orf87E5RJ46 101 aa9.42□□□□□ -0.9
COL7A1-205ENST00000465238 MT1HP80294 61 aa9.42□□□□□ -0.9
COL7A1-205ENST00000465238 ATP11AUNQ6ZP68 121 aa9.42□□□□□ -0.9
COL7A1-205ENST00000465238 NOTCH2NLQ7Z3S9 236 aa9.41□□□□□ -0.9
COL7A1-205ENST00000465238 ETDBQ3ZM63 59 aa9.4□□□□□ -0.9
COL7A1-205ENST00000465238 C20orf166-AS1Q96NR2 134 aa9.4□□□□□ -0.9
COL7A1-205ENST00000465238 A8MUU9 505 aa9.39□□□□□ -0.91
COL7A1-205ENST00000465238 A8MWP4 228 aa9.39□□□□□ -0.91
COL7A1-205ENST00000465238 FSIP2Q5CZC0 6907 aa9.38□□□□□ -0.91
COL7A1-205ENST00000465238 CRCT1Q9UGL9 99 aa9.37□□□□□ -0.91
COL7A1-205ENST00000465238 KRTAP16-1A8MUX0 517 aa9.36□□□□□ -0.91
COL7A1-205ENST00000465238 IGKV3D-7A0A0C4DH55 119 aa9.35□□□□□ -0.91
COL7A1-205ENST00000465238 Q6ZVQ6 151 aa9.35□□□□□ -0.91
COL7A1-205ENST00000465238 BPY2O14599 106 aa9.34□□□□□ -0.91
COL7A1-205ENST00000465238 A0A1B0GV90 55 aa9.33□□□□□ -0.92
COL7A1-205ENST00000465238 PRR15Q8IV56 129 aa9.33□□□□□ -0.92
COL7A1-205ENST00000465238 UBL5Q9BZL1 73 aa9.32□□□□□ -0.92
COL7A1-205ENST00000465238 C8orf17Q9NRJ1 99 aa9.32□□□□□ -0.92
COL7A1-205ENST00000465238 LINC00846Q9NV44 126 aa9.32□□□□□ -0.92
COL7A1-205ENST00000465238 LORP23490 312 aaPredicted RBP9.29□□□□□ -0.92
COL7A1-205ENST00000465238 K7EQZ3 153 aa9.27□□□□□ -0.93
COL7A1-205ENST00000465238 KRTAP10-6P60371 365 aaPredicted RBP9.27□□□□□ -0.93
COL7A1-205ENST00000465238 COX6B2Q6YFQ2 88 aa9.27□□□□□ -0.93
COL7A1-205ENST00000465238 M0R2T5 61 aa9.25□□□□□ -0.93
COL7A1-205ENST00000465238 FLGP20930 4061 aaPredicted RBP9.22□□□□□ -0.93
COL7A1-205ENST00000465238 MMP24-AS1A0A0U1RRL7 71 aa9.22□□□□□ -0.93
COL7A1-205ENST00000465238 Q8N9P0 234 aaPredicted RBP9.21□□□□□ -0.94
COL7A1-205ENST00000465238 Q8N9L7 120 aa9.2□□□□□ -0.94
COL7A1-205ENST00000465238 TMEM254Q8TBM7 123 aa9.2□□□□□ -0.94
COL7A1-205ENST00000465238 hDV103S1A0JD37 113 aa9.19□□□□□ -0.94
COL7A1-205ENST00000465238 ACYP1P07311 99 aa9.19□□□□□ -0.94
COL7A1-205ENST00000465238 MRPL34Q9BQ48 92 aaKnown RBP9.19□□□□□ -0.94
COL7A1-205ENST00000465238 ZCCHC13Q8WW36 166 aaKnown RBP9.16□□□□□ -0.94
COL7A1-205ENST00000465238 FAM240AA0A1B0GVK7 77 aa9.14□□□□□ -0.95
COL7A1-205ENST00000465238 WFDC13Q8IUB5 93 aa9.14□□□□□ -0.95
COL7A1-205ENST00000465238 NDUFS5O43920 106 aa9.13□□□□□ -0.95
COL7A1-205ENST00000465238 CXCL6P80162 114 aa9.13□□□□□ -0.95
COL7A1-205ENST00000465238 CASC2Q6XLA1 102 aa9.13□□□□□ -0.95
COL7A1-205ENST00000465238 HCG22E2RYF7 251 aa9.08□□□□□ -0.96
COL7A1-205ENST00000465238 J3QR89 54 aa9.02□□□□□ -0.97
COL7A1-205ENST00000465238 SPINK7P58062 85 aa9.02□□□□□ -0.97
COL7A1-205ENST00000465238 ATP5EP2Q5VTU8 51 aa9.02□□□□□ -0.97
COL7A1-205ENST00000465238 HRES1P13985 223 aa8.98□□□□□ -0.97
COL7A1-205ENST00000465238 LINC00643Q86TS7 51 aa8.98□□□□□ -0.97
COL7A1-205ENST00000465238 RBM12B-AS1Q9P1G2 102 aa8.98□□□□□ -0.97
COL7A1-205ENST00000465238 FAM236DA0A1B0GTK5 79 aa8.96□□□□□ -0.98
COL7A1-205ENST00000465238 FAM236CP0DP71 79 aa8.96□□□□□ -0.98
COL7A1-205ENST00000465238 HIST1H4AP62805 103 aaKnown RBP8.95□□□□□ -0.98
COL7A1-205ENST00000465238 Q5W150 140 aa8.95□□□□□ -0.98
COL7A1-205ENST00000465238 MPLKIPQ8TAP9 179 aa8.92□□□□□ -0.98
COL7A1-205ENST00000465238 TP53AIP1Q9HCN2 124 aa8.91□□□□□ -0.98
COL7A1-205ENST00000465238 IGKV2D-30A0A075B6S6 120 aa8.89□□□□□ -0.99
COL7A1-205ENST00000465238 IGKV2-30P06310 120 aa8.89□□□□□ -0.99
COL7A1-205ENST00000465238 KRTAP9-8Q9BYQ0 159 aa8.88□□□□□ -0.99
COL7A1-205ENST00000465238 C7orf65Q6ZTY9 151 aa8.87□□□□□ -0.99
COL7A1-205ENST00000465238 A0A087WVE0 104 aa8.82□□□□□ -1
COL7A1-205ENST00000465238 K7ERU9 68 aa8.81□□□□□ -1
COL7A1-205ENST00000465238 USH2AO75445 5202 aa8.8□□□□□ -1
COL7A1-205ENST00000465238 SSPOA2VEC9 5147 aa8.76□□□□□ -1.01
COL7A1-205ENST00000465238 TRAV22A0A0B4J277 110 aa8.73□□□□□ -1.01
COL7A1-205ENST00000465238 UQCRQO14949 82 aa8.73□□□□□ -1.01
COL7A1-205ENST00000465238 MT2AP02795 61 aa8.73□□□□□ -1.01
COL7A1-205ENST00000465238 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.72□□□□□ -1.01
COL7A1-205ENST00000465238 C4orf26Q17RF5 130 aa8.69□□□□□ -1.02
COL7A1-205ENST00000465238 KRTAP9-7A8MTY7 169 aa8.68□□□□□ -1.02
COL7A1-205ENST00000465238 LOC101927531A0A1B0GV80 90 aa8.67□□□□□ -1.02
COL7A1-205ENST00000465238 H1FX-AS1Q4G0G2 97 aa8.67□□□□□ -1.02
COL7A1-205ENST00000465238 H0Y9P7 68 aa8.66□□□□□ -1.02
COL7A1-205ENST00000465238 ATOX1O00244 68 aa8.66□□□□□ -1.02
COL7A1-205ENST00000465238 MT1FP04733 61 aa8.66□□□□□ -1.02
COL7A1-205ENST00000465238 IMUPQ9GZP8 106 aa8.65□□□□□ -1.02
COL7A1-205ENST00000465238 CYP4F30PQ9H0H9 118 aa8.65□□□□□ -1.02
COL7A1-205ENST00000465238 SCGB1A1P11684 91 aa8.64□□□□□ -1.03
COL7A1-205ENST00000465238 MT-ATP8P03928 68 aa8.63□□□□□ -1.03
COL7A1-205ENST00000465238 KRTAP10-10P60014 251 aa8.63□□□□□ -1.03
COL7A1-205ENST00000465238 OCR1Q9BZK8 76 aa8.62□□□□□ -1.03
COL7A1-205ENST00000465238 LCE2BO14633 110 aa8.61□□□□□ -1.03
COL7A1-205ENST00000465238 KRTAP9-3Q9BYQ3 159 aa8.61□□□□□ -1.03
COL7A1-205ENST00000465238 FCGBPQ9Y6R7 5405 aaPredicted RBP8.6□□□□□ -1.03
COL7A1-205ENST00000465238 C1orf64Q8NEQ6 169 aa8.59□□□□□ -1.03
COL7A1-205ENST00000465238 MP68P56378 58 aa8.58□□□□□ -1.04
COL7A1-205ENST00000465238 C5orf47Q569G3 176 aa8.56□□□□□ -1.04
COL7A1-205ENST00000465238 KRTAP19-1Q8IUB9 90 aa8.56□□□□□ -1.04
COL7A1-205ENST00000465238 LINC00208Q96KT6 92 aa8.56□□□□□ -1.04
COL7A1-205ENST00000465238 KRTAP3-1Q9BYR8 98 aa8.53□□□□□ -1.04
COL7A1-205ENST00000465238 FAM236AA0A1B0GUQ0 79 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms