RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 Q6ZRN7 208 aaPredicted RBP7.01□□□□□ -1.29
NPHP4-204ENST00000460696 AKAP9Q99996 3911 aa7□□□□□ -1.29
NPHP4-204ENST00000460696 SPANXA2-OT1Q8N9U9 137 aa7□□□□□ -1.29
NPHP4-204ENST00000460696 KRTAP10-1P60331 282 aa6.99□□□□□ -1.29
NPHP4-204ENST00000460696 C7orf65Q6ZTY9 151 aa6.99□□□□□ -1.29
NPHP4-204ENST00000460696 CYP4F30PQ9H0H9 118 aa6.98□□□□□ -1.29
NPHP4-204ENST00000460696 KRTAP29-1A8MX34 341 aaPredicted RBP6.96□□□□□ -1.3
NPHP4-204ENST00000460696 Q6ZR54 194 aa6.95□□□□□ -1.3
NPHP4-204ENST00000460696 A0A1B0GU69 56 aa6.95□□□□□ -1.3
NPHP4-204ENST00000460696 PRR26Q8N8Z3 221 aa6.94□□□□□ -1.3
NPHP4-204ENST00000460696 LINC00304Q8N9R0 145 aa6.93□□□□□ -1.3
NPHP4-204ENST00000460696 IGLV7-46A0A075B6I9 117 aa6.92□□□□□ -1.3
NPHP4-204ENST00000460696 CD164Q04900 197 aa6.92□□□□□ -1.3
NPHP4-204ENST00000460696 Q5VSD8 79 aa6.92□□□□□ -1.3
NPHP4-204ENST00000460696 Q1T7F1 81 aa6.91□□□□□ -1.3
NPHP4-204ENST00000460696 ZCCHC13Q8WW36 166 aaKnown RBP6.91□□□□□ -1.3
NPHP4-204ENST00000460696 C9orf92A6NGG3 77 aa6.91□□□□□ -1.3
NPHP4-204ENST00000460696 LINC00483Q53H64 154 aa6.91□□□□□ -1.3
NPHP4-204ENST00000460696 A0A087X002 238 aa6.9□□□□□ -1.3
NPHP4-204ENST00000460696 NOTCH2NLQ7Z3S9 236 aa6.9□□□□□ -1.3
NPHP4-204ENST00000460696 Q8N9P0 234 aaPredicted RBP6.9□□□□□ -1.3
NPHP4-204ENST00000460696 KRTAP13-1Q8IUC0 172 aa6.89□□□□□ -1.31
NPHP4-204ENST00000460696 HRES1P13985 223 aa6.85□□□□□ -1.31
NPHP4-204ENST00000460696 Q8N1X5 172 aa6.83□□□□□ -1.32
NPHP4-204ENST00000460696 ATP11AUNQ6ZP68 121 aa6.81□□□□□ -1.32
NPHP4-204ENST00000460696 Q5W150 140 aa6.8□□□□□ -1.32
NPHP4-204ENST00000460696 Q5VV11 94 aa6.78□□□□□ -1.32
NPHP4-204ENST00000460696 K7ERS5 55 aa6.77□□□□□ -1.33
NPHP4-204ENST00000460696 UQCR11O14957 56 aa6.74□□□□□ -1.33
NPHP4-204ENST00000460696 LINC01558Q9Y6Z2 57 aa6.72□□□□□ -1.33
NPHP4-204ENST00000460696 KRTAP13-2Q52LG2 175 aa6.71□□□□□ -1.33
NPHP4-204ENST00000460696 Q75L30 129 aa6.71□□□□□ -1.33
NPHP4-204ENST00000460696 CDC42SE1Q9NRR8 79 aa6.71□□□□□ -1.34
NPHP4-204ENST00000460696 CSMD3Q7Z407 3707 aa6.71□□□□□ -1.34
NPHP4-204ENST00000460696 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
NPHP4-204ENST00000460696 SPINK7P58062 85 aa6.68□□□□□ -1.34
NPHP4-204ENST00000460696 A8MU10 97 aa6.63□□□□□ -1.35
NPHP4-204ENST00000460696 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
NPHP4-204ENST00000460696 ASB16-AS1Q495Z4 193 aa6.61□□□□□ -1.35
NPHP4-204ENST00000460696 KTN1-AS1Q86SY8 53 aa6.61□□□□□ -1.35
NPHP4-204ENST00000460696 LCA10Q71F78 164 aa6.59□□□□□ -1.36
NPHP4-204ENST00000460696 COX6B2Q6YFQ2 88 aa6.56□□□□□ -1.36
NPHP4-204ENST00000460696 Q6ZSA8 131 aa6.55□□□□□ -1.36
NPHP4-204ENST00000460696 HUWE1Q7Z6Z7 4374 aaKnown RBP6.54□□□□□ -1.36
NPHP4-204ENST00000460696 KRTAP1-4P0C5Y4 121 aa6.53□□□□□ -1.36
NPHP4-204ENST00000460696 PRKDCP78527 4128 aaKnown RBP6.49□□□□□ -1.37
NPHP4-204ENST00000460696 A0A1B0GU33 70 aa6.48□□□□□ -1.37
NPHP4-204ENST00000460696 PRAC1Q96KF2 57 aa6.48□□□□□ -1.37
NPHP4-204ENST00000460696 A0A0D9SG42 100 aa6.47□□□□□ -1.37
NPHP4-204ENST00000460696 A0A1B0GVY2 172 aa6.43□□□□□ -1.38
NPHP4-204ENST00000460696 RBM12B-AS1Q9P1G2 102 aa6.43□□□□□ -1.38
NPHP4-204ENST00000460696 RPS29P62273 56 aaKnown RBP6.4□□□□□ -1.39
NPHP4-204ENST00000460696 DNAH9Q9NYC9 4486 aa6.38□□□□□ -1.39
NPHP4-204ENST00000460696 KRTAP16-1A8MUX0 517 aa6.37□□□□□ -1.39
NPHP4-204ENST00000460696 M0R2T5 61 aa6.37□□□□□ -1.39
NPHP4-204ENST00000460696 DNAH10Q8IVF4 4471 aa6.37□□□□□ -1.39
NPHP4-204ENST00000460696 KRTAP13-3Q3SY46 172 aa6.34□□□□□ -1.39
NPHP4-204ENST00000460696 KRTAP4-5Q9BYR2 181 aa6.34□□□□□ -1.39
NPHP4-204ENST00000460696 A6NN06 94 aa6.34□□□□□ -1.39
NPHP4-204ENST00000460696 SPATA8Q6RVD6 105 aa6.34□□□□□ -1.39
NPHP4-204ENST00000460696 SPINT4Q6UDR6 99 aa6.33□□□□□ -1.4
NPHP4-204ENST00000460696 PLECQ15149 4684 aaKnown RBP6.32□□□□□ -1.4
NPHP4-204ENST00000460696 LINC01554Q52M75 96 aa6.32□□□□□ -1.4
NPHP4-204ENST00000460696 ANK2Q01484 3957 aa6.32□□□□□ -1.4
NPHP4-204ENST00000460696 S4R3F8 94 aa6.31□□□□□ -1.4
NPHP4-204ENST00000460696 A8MUU9 505 aa6.3□□□□□ -1.4
NPHP4-204ENST00000460696 CSAG1Q6PB30 78 aa6.29□□□□□ -1.4
NPHP4-204ENST00000460696 H3BS24 57 aa6.29□□□□□ -1.4
NPHP4-204ENST00000460696 CRIPTQ9P021 101 aa6.29□□□□□ -1.4
NPHP4-204ENST00000460696 C20orf166-AS1Q96NR2 134 aa6.29□□□□□ -1.4
NPHP4-204ENST00000460696 H1FX-AS1Q4G0G2 97 aa6.28□□□□□ -1.4
NPHP4-204ENST00000460696 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
NPHP4-204ENST00000460696 KIAA1109Q2LD37 5005 aa6.23□□□□□ -1.41
NPHP4-204ENST00000460696 HYDINQ4G0P3 5121 aa6.22□□□□□ -1.41
NPHP4-204ENST00000460696 SEC61BP60468 96 aaKnown RBP6.19□□□□□ -1.42
NPHP4-204ENST00000460696 STARD9Q9P2P6 4700 aa6.19□□□□□ -1.42
NPHP4-204ENST00000460696 RPL37P61927 97 aaKnown RBP6.18□□□□□ -1.42
NPHP4-204ENST00000460696 DNAH1Q9P2D7 4330 aa6.18□□□□□ -1.42
NPHP4-204ENST00000460696 DNAH11Q96DT5 4516 aa6.15□□□□□ -1.42
NPHP4-204ENST00000460696 LYSTQ99698 3801 aa6.12□□□□□ -1.43
NPHP4-204ENST00000460696 XP32Q5T750 250 aa6.12□□□□□ -1.43
NPHP4-204ENST00000460696 DNAH5Q8TE73 4624 aa6.12□□□□□ -1.43
NPHP4-204ENST00000460696 KMT2CQ8NEZ4 4911 aaKnown RBP6.11□□□□□ -1.43
NPHP4-204ENST00000460696 RYR1P21817 5038 aa6.1□□□□□ -1.43
NPHP4-204ENST00000460696 RYR3Q15413 4870 aa6.1□□□□□ -1.43
NPHP4-204ENST00000460696 FAT1Q14517 4588 aa6.09□□□□□ -1.43
NPHP4-204ENST00000460696 R4GN34 69 aa6.08□□□□□ -1.44
NPHP4-204ENST00000460696 H0YAA0 97 aa6.08□□□□□ -1.44
NPHP4-204ENST00000460696 VPS13DQ5THJ4 4388 aa6.07□□□□□ -1.44
NPHP4-204ENST00000460696 ROMO1P60602 79 aa6.07□□□□□ -1.44
NPHP4-204ENST00000460696 CMYA5Q8N3K9 4069 aa6.05□□□□□ -1.44
NPHP4-204ENST00000460696 KMT2AQ03164 3969 aa6.05□□□□□ -1.44
NPHP4-204ENST00000460696 KRTAP10-8P60410 259 aa6.04□□□□□ -1.44
NPHP4-204ENST00000460696 M0QZ58 72 aa6.04□□□□□ -1.44
NPHP4-204ENST00000460696 DNAH3Q8TD57 4116 aa6.02□□□□□ -1.44
NPHP4-204ENST00000460696 KRTAP3-1Q9BYR8 98 aa6.01□□□□□ -1.45
NPHP4-204ENST00000460696 CAMK2N1Q7Z7J9 78 aa5.99□□□□□ -1.45
NPHP4-204ENST00000460696 DNAH17Q9UFH2 4485 aa5.99□□□□□ -1.45
NPHP4-204ENST00000460696 DYNC1H1Q14204 4646 aaKnown RBP5.97□□□□□ -1.45
NPHP4-204ENST00000460696 DNAH7Q8WXX0 4024 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 192.9 ms