RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DNAH3Q8TD57 4116 aa6.98□□□□□ -1.29
CPSF3-202ENST00000460593 KRTAP13-1Q8IUC0 172 aa6.97□□□□□ -1.29
CPSF3-202ENST00000460593 MDFIQ99750 246 aa6.97□□□□□ -1.29
CPSF3-202ENST00000460593 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.96□□□□□ -1.29
CPSF3-202ENST00000460593 C8orf87E5RJ46 101 aa6.96□□□□□ -1.3
CPSF3-202ENST00000460593 KRTAP24-1Q3LI83 254 aa6.95□□□□□ -1.3
CPSF3-202ENST00000460593 DNAH8Q96JB1 4490 aa6.92□□□□□ -1.3
CPSF3-202ENST00000460593 WWC2-AS2Q96NR7 200 aa6.91□□□□□ -1.3
CPSF3-202ENST00000460593 PLECQ15149 4684 aaKnown RBP6.9□□□□□ -1.31
CPSF3-202ENST00000460593 ALMS1Q8TCU4 4167 aa6.89□□□□□ -1.31
CPSF3-202ENST00000460593 ACYP2P14621 99 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 KRTAP13-3Q3SY46 172 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 A0A1B0GU69 56 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 C14orf177Q52M58 125 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 CIRBP-AS1Q8TBR5 109 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 PSORS1C2Q9UIG4 136 aa6.87□□□□□ -1.31
CPSF3-202ENST00000460593 LINC00483Q53H64 154 aa6.85□□□□□ -1.31
CPSF3-202ENST00000460593 SPACA4Q8TDM5 124 aa6.83□□□□□ -1.32
CPSF3-202ENST00000460593 APLNQ9ULZ1 77 aa6.83□□□□□ -1.32
CPSF3-202ENST00000460593 C4orf48Q5BLP8 95 aa6.82□□□□□ -1.32
CPSF3-202ENST00000460593 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
CPSF3-202ENST00000460593 TGP01266 2768 aa6.81□□□□□ -1.32
CPSF3-202ENST00000460593 PLA2G1BP04054 148 aaKnown RBP6.81□□□□□ -1.32
CPSF3-202ENST00000460593 DMAC1Q96GE9 116 aa6.8□□□□□ -1.32
CPSF3-202ENST00000460593 MIR22HGQ0VDD5 57 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 HECTD4Q9Y4D8 3996 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 FBN3Q75N90 2809 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 NBDYA0A0U1RRE5 68 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 RTL8CO15255 209 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 DNAH17Q9UFH2 4485 aa6.79□□□□□ -1.32
CPSF3-202ENST00000460593 MEGF8Q7Z7M0 2845 aa6.78□□□□□ -1.32
CPSF3-202ENST00000460593 CSAG1Q6PB30 78 aa6.78□□□□□ -1.32
CPSF3-202ENST00000460593 Q6ZRN7 208 aaPredicted RBP6.78□□□□□ -1.32
CPSF3-202ENST00000460593 IGLV5-52A0A0A0MRZ9 124 aa6.78□□□□□ -1.32
CPSF3-202ENST00000460593 SPATA8Q6RVD6 105 aa6.77□□□□□ -1.32
CPSF3-202ENST00000460593 ZNF706Q9Y5V0 76 aaPredicted RBP6.77□□□□□ -1.33
CPSF3-202ENST00000460593 ZNF861PO60384 105 aa6.76□□□□□ -1.33
CPSF3-202ENST00000460593 IGKV2D-30A0A075B6S6 120 aa6.75□□□□□ -1.33
CPSF3-202ENST00000460593 IGKV2-30P06310 120 aa6.75□□□□□ -1.33
CPSF3-202ENST00000460593 SPINK1P00995 79 aa6.75□□□□□ -1.33
CPSF3-202ENST00000460593 KMT2AQ03164 3969 aa6.75□□□□□ -1.33
CPSF3-202ENST00000460593 H3BS24 57 aa6.74□□□□□ -1.33
CPSF3-202ENST00000460593 STARD9Q9P2P6 4700 aa6.74□□□□□ -1.33
CPSF3-202ENST00000460593 UQCR11O14957 56 aa6.73□□□□□ -1.33
CPSF3-202ENST00000460593 A0A087WTM6 91 aa6.71□□□□□ -1.34
CPSF3-202ENST00000460593 FLG2Q5D862 2391 aaPredicted RBP6.69□□□□□ -1.34
CPSF3-202ENST00000460593 DNAH2Q9P225 4427 aa6.69□□□□□ -1.34
CPSF3-202ENST00000460593 VPS13DQ5THJ4 4388 aa6.68□□□□□ -1.34
CPSF3-202ENST00000460593 FAM229AH3BQW9 127 aa6.68□□□□□ -1.34
CPSF3-202ENST00000460593 DNAH6Q9C0G6 4158 aa6.66□□□□□ -1.34
CPSF3-202ENST00000460593 DYNC2H1Q8NCM8 4307 aaKnown RBP6.66□□□□□ -1.34
CPSF3-202ENST00000460593 Q8N1X5 172 aa6.66□□□□□ -1.34
CPSF3-202ENST00000460593 IGLV7-43P04211 117 aa6.65□□□□□ -1.34
CPSF3-202ENST00000460593 DNAH11Q96DT5 4516 aa6.61□□□□□ -1.35
CPSF3-202ENST00000460593 KRTAP16-1A8MUX0 517 aa6.61□□□□□ -1.35
CPSF3-202ENST00000460593 KRTAP13-2Q52LG2 175 aa6.6□□□□□ -1.35
CPSF3-202ENST00000460593 CRIPTQ9P021 101 aa6.58□□□□□ -1.36
CPSF3-202ENST00000460593 SSBP3-AS1Q7Z2R9 100 aa6.56□□□□□ -1.36
CPSF3-202ENST00000460593 LRP1BQ9NZR2 4599 aa6.54□□□□□ -1.36
CPSF3-202ENST00000460593 C1orf134Q5TEV5 83 aa6.54□□□□□ -1.36
CPSF3-202ENST00000460593 H0YAA0 97 aa6.53□□□□□ -1.36
CPSF3-202ENST00000460593 TYMSOSQ8TAI1 123 aa6.53□□□□□ -1.36
CPSF3-202ENST00000460593 Q6ZSA8 131 aa6.53□□□□□ -1.36
CPSF3-202ENST00000460593 NUPR2A6NF83 97 aa6.52□□□□□ -1.37
CPSF3-202ENST00000460593 DNAH5Q8TE73 4624 aa6.52□□□□□ -1.37
CPSF3-202ENST00000460593 PRKDCP78527 4128 aaKnown RBP6.51□□□□□ -1.37
CPSF3-202ENST00000460593 KRTAP10-2P60368 255 aa6.49□□□□□ -1.37
CPSF3-202ENST00000460593 LINC00304Q8N9R0 145 aa6.49□□□□□ -1.37
CPSF3-202ENST00000460593 A8MUU9 505 aa6.47□□□□□ -1.37
CPSF3-202ENST00000460593 KRTAP25-1Q3LHN0 102 aa6.45□□□□□ -1.38
CPSF3-202ENST00000460593 DMBT1Q9UGM3 2413 aaPredicted RBP6.44□□□□□ -1.38
CPSF3-202ENST00000460593 VPS13BQ7Z7G8 4022 aa6.44□□□□□ -1.38
CPSF3-202ENST00000460593 LY6G6CO95867 125 aa6.43□□□□□ -1.38
CPSF3-202ENST00000460593 KRTAP1-4P0C5Y4 121 aa6.41□□□□□ -1.38
CPSF3-202ENST00000460593 A0A1B0GU33 70 aa6.4□□□□□ -1.38
CPSF3-202ENST00000460593 FAT2Q9NYQ8 4349 aa6.4□□□□□ -1.39
CPSF3-202ENST00000460593 ROMO1P60602 79 aa6.4□□□□□ -1.39
CPSF3-202ENST00000460593 C9orf92A6NGG3 77 aa6.39□□□□□ -1.39
CPSF3-202ENST00000460593 KRTAP3-1Q9BYR8 98 aa6.37□□□□□ -1.39
CPSF3-202ENST00000460593 KRTAP10-1P60331 282 aa6.37□□□□□ -1.39
CPSF3-202ENST00000460593 H1FX-AS1Q4G0G2 97 aa6.34□□□□□ -1.39
CPSF3-202ENST00000460593 HYDINQ4G0P3 5121 aa6.32□□□□□ -1.4
CPSF3-202ENST00000460593 P0C880 135 aa6.31□□□□□ -1.4
CPSF3-202ENST00000460593 PKD1P98161 4303 aa6.28□□□□□ -1.4
CPSF3-202ENST00000460593 COX6B2Q6YFQ2 88 aa6.27□□□□□ -1.41
CPSF3-202ENST00000460593 A0A0D9SG42 100 aa6.24□□□□□ -1.41
CPSF3-202ENST00000460593 PKHD1P08F94 4074 aa6.22□□□□□ -1.41
CPSF3-202ENST00000460593 C10orf95Q9H7T3 257 aa6.2□□□□□ -1.42
CPSF3-202ENST00000460593 K7ERS5 55 aa6.2□□□□□ -1.42
CPSF3-202ENST00000460593 SMR3BP02814 79 aaPredicted RBP6.19□□□□□ -1.42
CPSF3-202ENST00000460593 DNHD1Q96M86 4753 aa6.18□□□□□ -1.42
CPSF3-202ENST00000460593 KRTAP13-4Q3LI77 160 aa6.18□□□□□ -1.42
CPSF3-202ENST00000460593 FAT1Q14517 4588 aa6.18□□□□□ -1.42
CPSF3-202ENST00000460593 TPRXLQ17RH7 258 aa6.17□□□□□ -1.42
CPSF3-202ENST00000460593 SPINT4Q6UDR6 99 aa6.17□□□□□ -1.42
CPSF3-202ENST00000460593 C20orf166-AS1Q96NR2 134 aa6.14□□□□□ -1.43
CPSF3-202ENST00000460593 SACSQ9NZJ4 4579 aa6.1□□□□□ -1.43
CPSF3-202ENST00000460593 KRTAP10-6P60371 365 aaPredicted RBP6.1□□□□□ -1.43
CPSF3-202ENST00000460593 RPL37P61927 97 aaKnown RBP6.1□□□□□ -1.43
CPSF3-202ENST00000460593 NDUFAF8A1L188 74 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms