RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ZNF469Q96JG9 3925 aaPredicted RBP3.85□□□□□ -1.79
VPS13D-202ENST00000460333 DMAC1Q96GE9 116 aa3.84□□□□□ -1.79
VPS13D-202ENST00000460333 CHTF8P0CG12 524 aa3.84□□□□□ -1.79
VPS13D-202ENST00000460333 Q96NJ1 140 aa3.84□□□□□ -1.79
VPS13D-202ENST00000460333 SPRR1BP22528 89 aa3.84□□□□□ -1.79
VPS13D-202ENST00000460333 ZNF861PO60384 105 aa3.84□□□□□ -1.8
VPS13D-202ENST00000460333 LINC00472Q9H8W2 130 aa3.83□□□□□ -1.8
VPS13D-202ENST00000460333 KRTAP1-5Q9BYS1 174 aa3.83□□□□□ -1.8
VPS13D-202ENST00000460333 VWFP04275 2813 aa3.82□□□□□ -1.8
VPS13D-202ENST00000460333 KRTAP29-1A8MX34 341 aaPredicted RBP3.81□□□□□ -1.8
VPS13D-202ENST00000460333 DMBT1Q9UGM3 2413 aaPredicted RBP3.81□□□□□ -1.8
VPS13D-202ENST00000460333 Q6ZR54 194 aa3.81□□□□□ -1.8
VPS13D-202ENST00000460333 ZFHX3Q15911 3703 aa3.81□□□□□ -1.8
VPS13D-202ENST00000460333 A0A1B0GU33 70 aa3.8□□□□□ -1.8
VPS13D-202ENST00000460333 COX6B2Q6YFQ2 88 aa3.8□□□□□ -1.8
VPS13D-202ENST00000460333 SPATA8Q6RVD6 105 aa3.79□□□□□ -1.8
VPS13D-202ENST00000460333 LINC00304Q8N9R0 145 aa3.78□□□□□ -1.8
VPS13D-202ENST00000460333 FBN1P35555 2871 aaKnown RBP3.77□□□□□ -1.81
VPS13D-202ENST00000460333 CUBNO60494 3623 aa3.77□□□□□ -1.81
VPS13D-202ENST00000460333 Q6ZRN7 208 aaPredicted RBP3.76□□□□□ -1.81
VPS13D-202ENST00000460333 PSORS1C2Q9UIG4 136 aa3.76□□□□□ -1.81
VPS13D-202ENST00000460333 KRTAP4-16G5E9R7 235 aaPredicted RBP3.76□□□□□ -1.81
VPS13D-202ENST00000460333 IGLV7-43P04211 117 aa3.75□□□□□ -1.81
VPS13D-202ENST00000460333 Q5W150 140 aa3.75□□□□□ -1.81
VPS13D-202ENST00000460333 PLAC8Q9NZF1 115 aa3.75□□□□□ -1.81
VPS13D-202ENST00000460333 LUZP6Q538Z0 58 aa3.74□□□□□ -1.81
VPS13D-202ENST00000460333 Q8N1X5 172 aa3.74□□□□□ -1.81
VPS13D-202ENST00000460333 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.74□□□□□ -1.81
VPS13D-202ENST00000460333 TENM3Q9P273 2699 aa3.74□□□□□ -1.81
VPS13D-202ENST00000460333 Q5VSD8 79 aa3.73□□□□□ -1.81
VPS13D-202ENST00000460333 KRTAP7-1Q8IUC3 87 aa3.71□□□□□ -1.81
VPS13D-202ENST00000460333 A8MU10 97 aa3.71□□□□□ -1.82
VPS13D-202ENST00000460333 TRRAPQ9Y4A5 3859 aa3.71□□□□□ -1.82
VPS13D-202ENST00000460333 A0A0A0MQY5 61 aa3.71□□□□□ -1.82
VPS13D-202ENST00000460333 ROMO1P60602 79 aa3.71□□□□□ -1.82
VPS13D-202ENST00000460333 KRTAP25-1Q3LHN0 102 aa3.7□□□□□ -1.82
VPS13D-202ENST00000460333 ANAPC11Q9NYG5 84 aa3.7□□□□□ -1.82
VPS13D-202ENST00000460333 LINC00483Q53H64 154 aa3.68□□□□□ -1.82
VPS13D-202ENST00000460333 A0A0D9SG42 100 aa3.68□□□□□ -1.82
VPS13D-202ENST00000460333 PKD1L1Q8TDX9 2849 aa3.68□□□□□ -1.82
VPS13D-202ENST00000460333 H1FX-AS1Q4G0G2 97 aa3.67□□□□□ -1.82
VPS13D-202ENST00000460333 KRTAP16-1A8MUX0 517 aa3.67□□□□□ -1.82
VPS13D-202ENST00000460333 PANO1I0J062 215 aa3.67□□□□□ -1.82
VPS13D-202ENST00000460333 RPL37P61927 97 aaKnown RBP3.66□□□□□ -1.82
VPS13D-202ENST00000460333 KRTAP10-2P60368 255 aa3.64□□□□□ -1.83
VPS13D-202ENST00000460333 KRTAP13-1Q8IUC0 172 aa3.64□□□□□ -1.83
VPS13D-202ENST00000460333 KRTAP11-1Q8IUC1 163 aa3.64□□□□□ -1.83
VPS13D-202ENST00000460333 KRTAP10-1P60331 282 aa3.63□□□□□ -1.83
VPS13D-202ENST00000460333 ADM2Q7Z4H4 148 aa3.63□□□□□ -1.83
VPS13D-202ENST00000460333 C9orf92A6NGG3 77 aa3.62□□□□□ -1.83
VPS13D-202ENST00000460333 Q6ZSA8 131 aa3.62□□□□□ -1.83
VPS13D-202ENST00000460333 M0R2T5 61 aa3.62□□□□□ -1.83
VPS13D-202ENST00000460333 SEC61BP60468 96 aaKnown RBP3.61□□□□□ -1.83
VPS13D-202ENST00000460333 HUWE1Q7Z6Z7 4374 aaKnown RBP3.6□□□□□ -1.83
VPS13D-202ENST00000460333 FLG2Q5D862 2391 aaPredicted RBP3.58□□□□□ -1.84
VPS13D-202ENST00000460333 DNAH3Q8TD57 4116 aa3.57□□□□□ -1.84
VPS13D-202ENST00000460333 S4R3F8 94 aa3.56□□□□□ -1.84
VPS13D-202ENST00000460333 ANK2Q01484 3957 aa3.56□□□□□ -1.84
VPS13D-202ENST00000460333 DNAH9Q9NYC9 4486 aa3.54□□□□□ -1.84
VPS13D-202ENST00000460333 CMYA5Q8N3K9 4069 aa3.54□□□□□ -1.84
VPS13D-202ENST00000460333 NOTCH2NLQ7Z3S9 236 aa3.54□□□□□ -1.84
VPS13D-202ENST00000460333 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
VPS13D-202ENST00000460333 A8MUU9 505 aa3.52□□□□□ -1.85
VPS13D-202ENST00000460333 TENM2Q9NT68 2774 aa3.5□□□□□ -1.85
VPS13D-202ENST00000460333 RPS29P62273 56 aaKnown RBP3.49□□□□□ -1.85
VPS13D-202ENST00000460333 KRTAP13-2Q52LG2 175 aa3.48□□□□□ -1.85
VPS13D-202ENST00000460333 CAMK2N1Q7Z7J9 78 aa3.48□□□□□ -1.85
VPS13D-202ENST00000460333 C20orf166-AS1Q96NR2 134 aa3.47□□□□□ -1.85
VPS13D-202ENST00000460333 FBN3Q75N90 2809 aa3.47□□□□□ -1.85
VPS13D-202ENST00000460333 TGP01266 2768 aa3.46□□□□□ -1.86
VPS13D-202ENST00000460333 MEGF8Q7Z7M0 2845 aa3.46□□□□□ -1.86
VPS13D-202ENST00000460333 A0A1B0GVY2 172 aa3.45□□□□□ -1.86
VPS13D-202ENST00000460333 KRTAP1-4P0C5Y4 121 aa3.45□□□□□ -1.86
VPS13D-202ENST00000460333 COL7A1Q02388 2944 aa3.44□□□□□ -1.86
VPS13D-202ENST00000460333 R4GN34 69 aa3.44□□□□□ -1.86
VPS13D-202ENST00000460333 DYNC2H1Q8NCM8 4307 aaKnown RBP3.43□□□□□ -1.86
VPS13D-202ENST00000460333 M0QZ58 72 aa3.43□□□□□ -1.86
VPS13D-202ENST00000460333 ALMS1Q8TCU4 4167 aa3.42□□□□□ -1.86
VPS13D-202ENST00000460333 PLECQ15149 4684 aaKnown RBP3.42□□□□□ -1.86
VPS13D-202ENST00000460333 VPS13DQ5THJ4 4388 aa3.42□□□□□ -1.86
VPS13D-202ENST00000460333 H0YAA0 97 aa3.4□□□□□ -1.87
VPS13D-202ENST00000460333 STARD9Q9P2P6 4700 aa3.37□□□□□ -1.87
VPS13D-202ENST00000460333 PRKDCP78527 4128 aaKnown RBP3.37□□□□□ -1.87
VPS13D-202ENST00000460333 DNAH1Q9P2D7 4330 aa3.37□□□□□ -1.87
VPS13D-202ENST00000460333 PLAC4Q8WY50 150 aa3.36□□□□□ -1.87
VPS13D-202ENST00000460333 KRTAP13-3Q3SY46 172 aa3.35□□□□□ -1.87
VPS13D-202ENST00000460333 DNHD1Q96M86 4753 aa3.35□□□□□ -1.87
VPS13D-202ENST00000460333 DNAH7Q8WXX0 4024 aa3.34□□□□□ -1.87
VPS13D-202ENST00000460333 DNAH17Q9UFH2 4485 aa3.34□□□□□ -1.88
VPS13D-202ENST00000460333 PP632Q6XCG6 107 aa3.34□□□□□ -1.88
VPS13D-202ENST00000460333 DNAH10Q8IVF4 4471 aa3.33□□□□□ -1.88
VPS13D-202ENST00000460333 DNAH6Q9C0G6 4158 aa3.33□□□□□ -1.88
VPS13D-202ENST00000460333 P0C880 135 aa3.33□□□□□ -1.88
VPS13D-202ENST00000460333 CSMD3Q7Z407 3707 aa3.29□□□□□ -1.88
VPS13D-202ENST00000460333 KRTAP10-8P60410 259 aa3.29□□□□□ -1.88
VPS13D-202ENST00000460333 C10orf95Q9H7T3 257 aa3.29□□□□□ -1.88
VPS13D-202ENST00000460333 SRRM2Q9UQ35 2752 aaKnown RBP3.28□□□□□ -1.88
VPS13D-202ENST00000460333 DNAH2Q9P225 4427 aa3.28□□□□□ -1.88
VPS13D-202ENST00000460333 KRTAP10-4P60372 401 aaPredicted RBP3.28□□□□□ -1.88
VPS13D-202ENST00000460333 KMT2AQ03164 3969 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms