RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 A0A1W2PNN7 141 aa6.1□□□□□ -1.43
UFD1-205ENST00000459854 SPRR1BP22528 89 aa6.09□□□□□ -1.43
UFD1-205ENST00000459854 A0A0D9SG42 100 aa6.09□□□□□ -1.43
UFD1-205ENST00000459854 Q8N1X5 172 aa6.09□□□□□ -1.43
UFD1-205ENST00000459854 VPS13CQ709C8 3753 aa6.08□□□□□ -1.44
UFD1-205ENST00000459854 NBEAL2Q6ZNJ1 2754 aa6.07□□□□□ -1.44
UFD1-205ENST00000459854 SVEP1Q4LDE5 3571 aa6.07□□□□□ -1.44
UFD1-205ENST00000459854 ROMO1P60602 79 aa6.06□□□□□ -1.44
UFD1-205ENST00000459854 LINC00472Q9H8W2 130 aa6.06□□□□□ -1.44
UFD1-205ENST00000459854 PSORS1C2Q9UIG4 136 aa6.06□□□□□ -1.44
UFD1-205ENST00000459854 LCE6AA0A183 80 aa6.05□□□□□ -1.44
UFD1-205ENST00000459854 A0A087WTM6 91 aa6.05□□□□□ -1.44
UFD1-205ENST00000459854 A6NN06 94 aa6.04□□□□□ -1.44
UFD1-205ENST00000459854 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
UFD1-205ENST00000459854 ZCCHC13Q8WW36 166 aaKnown RBP6.04□□□□□ -1.44
UFD1-205ENST00000459854 J3QL48 77 aa6.03□□□□□ -1.44
UFD1-205ENST00000459854 SPATA8Q6RVD6 105 aa6.02□□□□□ -1.45
UFD1-205ENST00000459854 Q6ZR54 194 aa6.02□□□□□ -1.45
UFD1-205ENST00000459854 VWFP04275 2813 aa6.01□□□□□ -1.45
UFD1-205ENST00000459854 Q5W150 140 aa6□□□□□ -1.45
UFD1-205ENST00000459854 RPL37P61927 97 aaKnown RBP6□□□□□ -1.45
UFD1-205ENST00000459854 STAB2Q8WWQ8 2551 aa6□□□□□ -1.45
UFD1-205ENST00000459854 C9orf92A6NGG3 77 aa5.99□□□□□ -1.45
UFD1-205ENST00000459854 H1FX-AS1Q4G0G2 97 aa5.94□□□□□ -1.46
UFD1-205ENST00000459854 COX6B2Q6YFQ2 88 aa5.94□□□□□ -1.46
UFD1-205ENST00000459854 KRTAP29-1A8MX34 341 aaPredicted RBP5.94□□□□□ -1.46
UFD1-205ENST00000459854 ANAPC11Q9NYG5 84 aa5.94□□□□□ -1.46
UFD1-205ENST00000459854 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
UFD1-205ENST00000459854 PKD1L1Q8TDX9 2849 aa5.92□□□□□ -1.46
UFD1-205ENST00000459854 KRTAP25-1Q3LHN0 102 aa5.92□□□□□ -1.46
UFD1-205ENST00000459854 Q8NDZ9 215 aa5.92□□□□□ -1.46
UFD1-205ENST00000459854 FBN3Q75N90 2809 aa5.91□□□□□ -1.46
UFD1-205ENST00000459854 KRTAP26-1Q6PEX3 210 aa5.91□□□□□ -1.46
UFD1-205ENST00000459854 TRRAPQ9Y4A5 3859 aa5.91□□□□□ -1.46
UFD1-205ENST00000459854 S4R3F8 94 aa5.9□□□□□ -1.47
UFD1-205ENST00000459854 KRTAP1-5Q9BYS1 174 aa5.89□□□□□ -1.47
UFD1-205ENST00000459854 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.88□□□□□ -1.47
UFD1-205ENST00000459854 PLAC8Q9NZF1 115 aa5.87□□□□□ -1.47
UFD1-205ENST00000459854 TENM3Q9P273 2699 aa5.86□□□□□ -1.47
UFD1-205ENST00000459854 CUBNO60494 3623 aa5.85□□□□□ -1.47
UFD1-205ENST00000459854 Q6ZSA8 131 aa5.82□□□□□ -1.48
UFD1-205ENST00000459854 KRTAP4-16G5E9R7 235 aaPredicted RBP5.81□□□□□ -1.48
UFD1-205ENST00000459854 ANK2Q01484 3957 aa5.8□□□□□ -1.48
UFD1-205ENST00000459854 Q6ZRN7 208 aaPredicted RBP5.79□□□□□ -1.48
UFD1-205ENST00000459854 R4GN34 69 aa5.77□□□□□ -1.49
UFD1-205ENST00000459854 TGP01266 2768 aa5.77□□□□□ -1.49
UFD1-205ENST00000459854 MEGF8Q7Z7M0 2845 aa5.76□□□□□ -1.49
UFD1-205ENST00000459854 PANO1I0J062 215 aa5.76□□□□□ -1.49
UFD1-205ENST00000459854 DNHD1Q96M86 4753 aa5.75□□□□□ -1.49
UFD1-205ENST00000459854 KRTAP10-2P60368 255 aa5.74□□□□□ -1.49
UFD1-205ENST00000459854 KRTAP10-1P60331 282 aa5.7□□□□□ -1.5
UFD1-205ENST00000459854 SMR3BP02814 79 aaPredicted RBP5.69□□□□□ -1.5
UFD1-205ENST00000459854 SEC61BP60468 96 aaKnown RBP5.69□□□□□ -1.5
UFD1-205ENST00000459854 TENM2Q9NT68 2774 aa5.69□□□□□ -1.5
UFD1-205ENST00000459854 NDUFAF8A1L188 74 aa5.68□□□□□ -1.5
UFD1-205ENST00000459854 HUWE1Q7Z6Z7 4374 aaKnown RBP5.66□□□□□ -1.5
UFD1-205ENST00000459854 M0QZ58 72 aa5.66□□□□□ -1.5
UFD1-205ENST00000459854 RPS29P62273 56 aaKnown RBP5.65□□□□□ -1.5
UFD1-205ENST00000459854 DNAH9Q9NYC9 4486 aa5.65□□□□□ -1.51
UFD1-205ENST00000459854 ADM2Q7Z4H4 148 aa5.64□□□□□ -1.51
UFD1-205ENST00000459854 PLAC4Q8WY50 150 aa5.64□□□□□ -1.51
UFD1-205ENST00000459854 KRTAP11-1Q8IUC1 163 aa5.61□□□□□ -1.51
UFD1-205ENST00000459854 Q5VSD8 79 aa5.59□□□□□ -1.52
UFD1-205ENST00000459854 A8MUU9 505 aa5.58□□□□□ -1.52
UFD1-205ENST00000459854 A0A1B0GVY2 172 aa5.57□□□□□ -1.52
UFD1-205ENST00000459854 DNAH3Q8TD57 4116 aa5.57□□□□□ -1.52
UFD1-205ENST00000459854 A8MU10 97 aa5.56□□□□□ -1.52
UFD1-205ENST00000459854 CMYA5Q8N3K9 4069 aa5.56□□□□□ -1.52
UFD1-205ENST00000459854 NOTCH2NLQ7Z3S9 236 aa5.56□□□□□ -1.52
UFD1-205ENST00000459854 C20orf166-AS1Q96NR2 134 aa5.55□□□□□ -1.52
UFD1-205ENST00000459854 PP632Q6XCG6 107 aa5.54□□□□□ -1.52
UFD1-205ENST00000459854 PRKDCP78527 4128 aaKnown RBP5.53□□□□□ -1.52
UFD1-205ENST00000459854 ALMS1Q8TCU4 4167 aa5.49□□□□□ -1.53
UFD1-205ENST00000459854 COL7A1Q02388 2944 aa5.47□□□□□ -1.53
UFD1-205ENST00000459854 KRTAP13-1Q8IUC0 172 aa5.46□□□□□ -1.53
UFD1-205ENST00000459854 KRTAP7-1Q8IUC3 87 aa5.45□□□□□ -1.54
UFD1-205ENST00000459854 M0R2T5 61 aa5.44□□□□□ -1.54
UFD1-205ENST00000459854 TNP1P09430 55 aa5.39□□□□□ -1.55
UFD1-205ENST00000459854 PLECQ15149 4684 aaKnown RBP5.38□□□□□ -1.55
UFD1-205ENST00000459854 P0C880 135 aa5.38□□□□□ -1.55
UFD1-205ENST00000459854 STARD9Q9P2P6 4700 aa5.35□□□□□ -1.55
UFD1-205ENST00000459854 VPS13DQ5THJ4 4388 aa5.34□□□□□ -1.56
UFD1-205ENST00000459854 C10orf95Q9H7T3 257 aa5.32□□□□□ -1.56
UFD1-205ENST00000459854 H0YAA0 97 aa5.31□□□□□ -1.56
UFD1-205ENST00000459854 KRTAP13-2Q52LG2 175 aa5.29□□□□□ -1.56
UFD1-205ENST00000459854 DYNC2H1Q8NCM8 4307 aaKnown RBP5.29□□□□□ -1.56
UFD1-205ENST00000459854 DNAH7Q8WXX0 4024 aa5.27□□□□□ -1.57
UFD1-205ENST00000459854 FLG2Q5D862 2391 aaPredicted RBP5.26□□□□□ -1.57
UFD1-205ENST00000459854 DMBT1Q9UGM3 2413 aaPredicted RBP5.24□□□□□ -1.57
UFD1-205ENST00000459854 DNAH1Q9P2D7 4330 aa5.24□□□□□ -1.57
UFD1-205ENST00000459854 KRTAP1-4P0C5Y4 121 aa5.23□□□□□ -1.57
UFD1-205ENST00000459854 DNAH6Q9C0G6 4158 aa5.21□□□□□ -1.58
UFD1-205ENST00000459854 DNAH11Q96DT5 4516 aa5.18□□□□□ -1.58
UFD1-205ENST00000459854 SACSQ9NZJ4 4579 aa5.18□□□□□ -1.58
UFD1-205ENST00000459854 RYR2Q92736 4967 aa5.18□□□□□ -1.58
UFD1-205ENST00000459854 CSMD3Q7Z407 3707 aa5.17□□□□□ -1.58
UFD1-205ENST00000459854 DNAH10Q8IVF4 4471 aa5.17□□□□□ -1.58
UFD1-205ENST00000459854 DNAH17Q9UFH2 4485 aa5.17□□□□□ -1.58
UFD1-205ENST00000459854 KRTAP10-8P60410 259 aa5.15□□□□□ -1.58
UFD1-205ENST00000459854 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms