RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 TMEM254Q8TBM7 123 aa6.3□□□□□ -1.4
USP39-210ENST00000459775 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 ROMO1P60602 79 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 Q6ZRX8 168 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 PRAC1Q96KF2 57 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 HIGD2AQ9BW72 106 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 LINC00846Q9NV44 126 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 Q5VSD8 79 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 LINC00575Q6W349 94 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 CASC2Q6XLA1 102 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 VPS13BQ7Z7G8 4022 aa6.29□□□□□ -1.4
USP39-210ENST00000459775 HERC1Q15751 4861 aa6.28□□□□□ -1.4
USP39-210ENST00000459775 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
USP39-210ENST00000459775 ST20-AS1Q8NBB2 130 aa6.28□□□□□ -1.4
USP39-210ENST00000459775 C1orf64Q8NEQ6 169 aa6.27□□□□□ -1.41
USP39-210ENST00000459775 OBSCN-AS1Q96MR7 158 aa6.27□□□□□ -1.41
USP39-210ENST00000459775 H0YGX0 51 aa6.26□□□□□ -1.41
USP39-210ENST00000459775 KRTAP13-1Q8IUC0 172 aa6.26□□□□□ -1.41
USP39-210ENST00000459775 A6NED7 52 aa6.26□□□□□ -1.41
USP39-210ENST00000459775 DMBT1Q9UGM3 2413 aaPredicted RBP6.26□□□□□ -1.41
USP39-210ENST00000459775 FAM229AH3BQW9 127 aa6.25□□□□□ -1.41
USP39-210ENST00000459775 IGLV7-43P04211 117 aa6.25□□□□□ -1.41
USP39-210ENST00000459775 DEFB105AQ8NG35 78 aa6.25□□□□□ -1.41
USP39-210ENST00000459775 Q6ZQY7 126 aa6.25□□□□□ -1.41
USP39-210ENST00000459775 RPL37AP61513 92 aaKnown RBP6.24□□□□□ -1.41
USP39-210ENST00000459775 KRTAP10-4P60372 401 aaPredicted RBP6.23□□□□□ -1.41
USP39-210ENST00000459775 ANAPC11Q9NYG5 84 aa6.23□□□□□ -1.41
USP39-210ENST00000459775 ZNF861PO60384 105 aa6.23□□□□□ -1.41
USP39-210ENST00000459775 C8orf17Q9NRJ1 99 aa6.21□□□□□ -1.42
USP39-210ENST00000459775 DHRS4-AS1Q9P1J3 65 aa6.21□□□□□ -1.42
USP39-210ENST00000459775 LINC01547P58512 204 aaPredicted RBP6.2□□□□□ -1.42
USP39-210ENST00000459775 Q8N9P0 234 aaPredicted RBP6.2□□□□□ -1.42
USP39-210ENST00000459775 KRTAP29-1A8MX34 341 aaPredicted RBP6.2□□□□□ -1.42
USP39-210ENST00000459775 PRR4Q16378 134 aa6.2□□□□□ -1.42
USP39-210ENST00000459775 Q8N377 158 aa6.19□□□□□ -1.42
USP39-210ENST00000459775 NREPQ16612 68 aa6.17□□□□□ -1.42
USP39-210ENST00000459775 LUZP6Q538Z0 58 aa6.17□□□□□ -1.42
USP39-210ENST00000459775 ORMDL1Q9P0S3 153 aa6.17□□□□□ -1.42
USP39-210ENST00000459775 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.17□□□□□ -1.42
USP39-210ENST00000459775 PRR15LQ9BU68 103 aa6.17□□□□□ -1.42
USP39-210ENST00000459775 A0A0G2JQZ4 141 aa6.16□□□□□ -1.42
USP39-210ENST00000459775 SPRR4Q96PI1 79 aa6.16□□□□□ -1.42
USP39-210ENST00000459775 OCR1Q9BZK8 76 aa6.15□□□□□ -1.42
USP39-210ENST00000459775 IGLV5-48A0A075B6I7 105 aa6.14□□□□□ -1.43
USP39-210ENST00000459775 SMIM29Q86T20 159 aa6.14□□□□□ -1.43
USP39-210ENST00000459775 UBL5Q9BZL1 73 aa6.14□□□□□ -1.43
USP39-210ENST00000459775 A8MWP4 228 aa6.13□□□□□ -1.43
USP39-210ENST00000459775 K7ERS5 55 aa6.13□□□□□ -1.43
USP39-210ENST00000459775 MYCBP2O75592 4640 aa6.13□□□□□ -1.43
USP39-210ENST00000459775 KRTAP1-4P0C5Y4 121 aa6.13□□□□□ -1.43
USP39-210ENST00000459775 Q6ZQT0 140 aa6.13□□□□□ -1.43
USP39-210ENST00000459775 LRP1Q07954 4544 aaKnown RBP6.12□□□□□ -1.43
USP39-210ENST00000459775 SPINK6Q6UWN8 80 aa6.11□□□□□ -1.43
USP39-210ENST00000459775 MIR22HGQ0VDD5 57 aa6.1□□□□□ -1.43
USP39-210ENST00000459775 LINC00483Q53H64 154 aa6.1□□□□□ -1.43
USP39-210ENST00000459775 SPRR1BP22528 89 aa6.09□□□□□ -1.43
USP39-210ENST00000459775 FLG2Q5D862 2391 aaPredicted RBP6.09□□□□□ -1.43
USP39-210ENST00000459775 C14orf132Q9NPU4 83 aa6.08□□□□□ -1.44
USP39-210ENST00000459775 KRTAP13-2Q52LG2 175 aa6.08□□□□□ -1.44
USP39-210ENST00000459775 PKHD1L1Q86WI1 4243 aa6.07□□□□□ -1.44
USP39-210ENST00000459775 LCE2DQ5TA82 110 aaPredicted RBP6.07□□□□□ -1.44
USP39-210ENST00000459775 P0C880 135 aa6.05□□□□□ -1.44
USP39-210ENST00000459775 CSAG1Q6PB30 78 aa6.05□□□□□ -1.44
USP39-210ENST00000459775 A0A087WSZ3 146 aa6.05□□□□□ -1.44
USP39-210ENST00000459775 A0A1W2PNM2 257 aa6.05□□□□□ -1.44
USP39-210ENST00000459775 JMJD7-PLA2G4BH0Y9G9 81 aa6.05□□□□□ -1.44
USP39-210ENST00000459775 BPY2O14599 106 aa6.04□□□□□ -1.44
USP39-210ENST00000459775 IGFL1Q6UW32 110 aa6.04□□□□□ -1.44
USP39-210ENST00000459775 UBR4Q5T4S7 5183 aa6.03□□□□□ -1.44
USP39-210ENST00000459775 NDUFB1O75438 58 aa6.03□□□□□ -1.44
USP39-210ENST00000459775 ZCCHC13Q8WW36 166 aaKnown RBP6.03□□□□□ -1.44
USP39-210ENST00000459775 HMCN2Q8NDA2 5059 aa6.03□□□□□ -1.44
USP39-210ENST00000459775 IGLV8-61A0A075B6I0 122 aa6.02□□□□□ -1.45
USP39-210ENST00000459775 FAT3Q8TDW7 4589 aa6.02□□□□□ -1.45
USP39-210ENST00000459775 LINC01558Q9Y6Z2 57 aa6.02□□□□□ -1.45
USP39-210ENST00000459775 H3BQ85 93 aa6.01□□□□□ -1.45
USP39-210ENST00000459775 Q8NBF4 154 aa6.01□□□□□ -1.45
USP39-210ENST00000459775 C20orf166-AS1Q96NR2 134 aa6□□□□□ -1.45
USP39-210ENST00000459775 TYMSOSQ8TAI1 123 aa5.99□□□□□ -1.45
USP39-210ENST00000459775 CAMK2N1Q7Z7J9 78 aa5.98□□□□□ -1.45
USP39-210ENST00000459775 LOC110117498A0A087WWA1 95 aa5.97□□□□□ -1.45
USP39-210ENST00000459775 SPAG11AQ6PDA7 123 aa5.97□□□□□ -1.45
USP39-210ENST00000459775 SPANXA2-OT1Q8N9U9 137 aa5.97□□□□□ -1.45
USP39-210ENST00000459775 LINC00208Q96KT6 92 aa5.97□□□□□ -1.45
USP39-210ENST00000459775 TNXBP22105 4242 aa5.97□□□□□ -1.45
USP39-210ENST00000459775 KRTAP23-1A1A580 65 aa5.96□□□□□ -1.45
USP39-210ENST00000459775 A0A1B0GVX0 72 aa5.95□□□□□ -1.46
USP39-210ENST00000459775 MT1HL1P0DM35 61 aa5.95□□□□□ -1.46
USP39-210ENST00000459775 KRTAP10-8P60410 259 aa5.95□□□□□ -1.46
USP39-210ENST00000459775 SSBP3-AS1Q7Z2R9 100 aa5.94□□□□□ -1.46
USP39-210ENST00000459775 PDE6GP18545 87 aa5.93□□□□□ -1.46
USP39-210ENST00000459775 LINC00304Q8N9R0 145 aa5.92□□□□□ -1.46
USP39-210ENST00000459775 DEFB116Q30KQ4 102 aa5.91□□□□□ -1.46
USP39-210ENST00000459775 SPINK7P58062 85 aa5.9□□□□□ -1.47
USP39-210ENST00000459775 H3BPC8 53 aa5.89□□□□□ -1.47
USP39-210ENST00000459775 A8MUU9 505 aa5.89□□□□□ -1.47
USP39-210ENST00000459775 KRTAP25-1Q3LHN0 102 aa5.88□□□□□ -1.47
USP39-210ENST00000459775 NDUFAF8A1L188 74 aa5.84□□□□□ -1.47
USP39-210ENST00000459775 SPINK1P00995 79 aa5.84□□□□□ -1.47
USP39-210ENST00000459775 Q96NJ1 140 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms