RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 DSCR10P59022 87 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 CNFNQ9BYD5 112 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 R4GN34 69 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 NBDYA0A0U1RRE5 68 aa3.13□□□□□ -1.91
VPS41-209ENST00000457055 LINC01590Q5TEZ4 76 aa3.13□□□□□ -1.91
VPS41-209ENST00000457055 LINC00472Q9H8W2 130 aa3.13□□□□□ -1.91
VPS41-209ENST00000457055 IGLV4-60A0A075B6I1 120 aa3.12□□□□□ -1.91
VPS41-209ENST00000457055 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.12□□□□□ -1.91
VPS41-209ENST00000457055 A0A1W2PNN7 141 aa3.12□□□□□ -1.91
VPS41-209ENST00000457055 IGKV2-29A2NJV5 120 aaPredicted RBP3.12□□□□□ -1.91
VPS41-209ENST00000457055 LY6EQ16553 131 aa3.12□□□□□ -1.91
VPS41-209ENST00000457055 MRPL33O75394 65 aaKnown RBP3.11□□□□□ -1.91
VPS41-209ENST00000457055 LINC00308Q8TCZ7 52 aa3.11□□□□□ -1.91
VPS41-209ENST00000457055 C5orf56Q8N8D9 126 aa3.1□□□□□ -1.91
VPS41-209ENST00000457055 Q96NJ1 140 aa3.1□□□□□ -1.91
VPS41-209ENST00000457055 LYSTQ99698 3801 aa3.1□□□□□ -1.91
VPS41-209ENST00000457055 NDUFA1O15239 70 aa3.09□□□□□ -1.91
VPS41-209ENST00000457055 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.91
VPS41-209ENST00000457055 KIAA1109Q2LD37 5005 aa3.08□□□□□ -1.92
VPS41-209ENST00000457055 DNAH3Q8TD57 4116 aa3.08□□□□□ -1.92
VPS41-209ENST00000457055 ACYP2P14621 99 aa3.08□□□□□ -1.92
VPS41-209ENST00000457055 LCE3AQ5TA76 89 aa3.08□□□□□ -1.92
VPS41-209ENST00000457055 FRAS1Q86XX4 4008 aa3.08□□□□□ -1.92
VPS41-209ENST00000457055 STAB2Q8WWQ8 2551 aa3.07□□□□□ -1.92
VPS41-209ENST00000457055 H0YGG7 62 aa3.07□□□□□ -1.92
VPS41-209ENST00000457055 Q6ZQY7 126 aa3.07□□□□□ -1.92
VPS41-209ENST00000457055 UBR4Q5T4S7 5183 aa3.07□□□□□ -1.92
VPS41-209ENST00000457055 A0A0G2JQZ4 141 aa3.06□□□□□ -1.92
VPS41-209ENST00000457055 LINC00612Q8N6U2 182 aa3.06□□□□□ -1.92
VPS41-209ENST00000457055 LINC00304Q8N9R0 145 aa3.06□□□□□ -1.92
VPS41-209ENST00000457055 ABCA13Q86UQ4 5058 aa3.05□□□□□ -1.92
VPS41-209ENST00000457055 H3BSH0 61 aa3.05□□□□□ -1.92
VPS41-209ENST00000457055 HECTD4Q9Y4D8 3996 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 DEFB131BA0A096LNP1 70 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 LINC00158P58513 81 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 KRTAP13-3Q3SY46 172 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 C10orf55Q5SWW7 151 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 SMIM11BQ8TCY0 68 aa3.04□□□□□ -1.92
VPS41-209ENST00000457055 DNAH7Q8WXX0 4024 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 CCL22O00626 93 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 IGLV6-57P01721 117 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 HRES1P13985 223 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 KRTAP12-2P59991 146 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 DEFB134Q4QY38 66 aa3.03□□□□□ -1.92
VPS41-209ENST00000457055 CRIP1P50238 77 aa3.02□□□□□ -1.93
VPS41-209ENST00000457055 TPRXLQ17RH7 258 aa3.02□□□□□ -1.93
VPS41-209ENST00000457055 PLECQ15149 4684 aaKnown RBP3.02□□□□□ -1.93
VPS41-209ENST00000457055 K7EIL1 84 aa3.01□□□□□ -1.93
VPS41-209ENST00000457055 SPACA4Q8TDM5 124 aa3.01□□□□□ -1.93
VPS41-209ENST00000457055 HUWE1Q7Z6Z7 4374 aaKnown RBP3□□□□□ -1.93
VPS41-209ENST00000457055 STARD9Q9P2P6 4700 aa3□□□□□ -1.93
VPS41-209ENST00000457055 HERC1Q15751 4861 aa3□□□□□ -1.93
VPS41-209ENST00000457055 LYNX1G3V0Z9 82 aa3□□□□□ -1.93
VPS41-209ENST00000457055 LYNX1P0DP58 116 aa3□□□□□ -1.93
VPS41-209ENST00000457055 LINC00315P59091 139 aa3□□□□□ -1.93
VPS41-209ENST00000457055 SSBP3-AS1Q7Z2R9 100 aa3□□□□□ -1.93
VPS41-209ENST00000457055 DNAH10Q8IVF4 4471 aa3□□□□□ -1.93
VPS41-209ENST00000457055 H3BRN7 92 aa2.99□□□□□ -1.93
VPS41-209ENST00000457055 KRTAP11-1Q8IUC1 163 aa2.98□□□□□ -1.93
VPS41-209ENST00000457055 Q8IZM0 81 aa2.98□□□□□ -1.93
VPS41-209ENST00000457055 KRTAP10-8P60410 259 aa2.97□□□□□ -1.93
VPS41-209ENST00000457055 ANAPC11Q9NYG5 84 aa2.97□□□□□ -1.93
VPS41-209ENST00000457055 INE1O15225 51 aa2.96□□□□□ -1.94
VPS41-209ENST00000457055 PRB3Q04118 309 aaPredicted RBP2.96□□□□□ -1.94
VPS41-209ENST00000457055 Q8N9L7 120 aa2.96□□□□□ -1.94
VPS41-209ENST00000457055 CDKN2A-AS1Q9UH64 79 aa2.96□□□□□ -1.94
VPS41-209ENST00000457055 LY6G6CO95867 125 aa2.95□□□□□ -1.94
VPS41-209ENST00000457055 ANGP03950 147 aaKnown RBP2.95□□□□□ -1.94
VPS41-209ENST00000457055 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.95□□□□□ -1.94
VPS41-209ENST00000457055 IGKV2D-24A0A075B6R9 120 aa2.94□□□□□ -1.94
VPS41-209ENST00000457055 M0R2N4 97 aa2.93□□□□□ -1.94
VPS41-209ENST00000457055 POLR2KP53803 58 aaKnown RBP2.93□□□□□ -1.94
VPS41-209ENST00000457055 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
VPS41-209ENST00000457055 ALMS1Q8TCU4 4167 aa2.93□□□□□ -1.94
VPS41-209ENST00000457055 IGKV2-28A0A075B6P5 120 aa2.92□□□□□ -1.94
VPS41-209ENST00000457055 IGKV2D-28P01615 120 aa2.92□□□□□ -1.94
VPS41-209ENST00000457055 RPS27P42677 84 aaKnown RBP2.92□□□□□ -1.94
VPS41-209ENST00000457055 SPINK9Q5DT21 86 aa2.92□□□□□ -1.94
VPS41-209ENST00000457055 LINC00575Q6W349 94 aa2.92□□□□□ -1.94
VPS41-209ENST00000457055 Q6ZRX8 168 aa2.92□□□□□ -1.94
VPS41-209ENST00000457055 SORL1Q92673 2214 aa2.91□□□□□ -1.94
VPS41-209ENST00000457055 G3V318 75 aa2.91□□□□□ -1.94
VPS41-209ENST00000457055 KMT2AQ03164 3969 aa2.9□□□□□ -1.94
VPS41-209ENST00000457055 DYNC1H1Q14204 4646 aaKnown RBP2.9□□□□□ -1.95
VPS41-209ENST00000457055 RPL39P62891 51 aaKnown RBP2.9□□□□□ -1.95
VPS41-209ENST00000457055 PIGYQ3MUY2 71 aa2.9□□□□□ -1.95
VPS41-209ENST00000457055 PLAC4Q8WY50 150 aa2.9□□□□□ -1.95
VPS41-209ENST00000457055 PRCDQ00LT1 54 aa2.89□□□□□ -1.95
VPS41-209ENST00000457055 RPL39LQ96EH5 51 aaKnown RBP2.89□□□□□ -1.95
VPS41-209ENST00000457055 BRD3OSQ6XYD6 125 aa2.88□□□□□ -1.95
VPS41-209ENST00000457055 DEFB108BQ8NET1 73 aa2.88□□□□□ -1.95
VPS41-209ENST00000457055 TP53AIP1Q9HCN2 124 aa2.88□□□□□ -1.95
VPS41-209ENST00000457055 HSPG2P98160 4391 aa2.86□□□□□ -1.95
VPS41-209ENST00000457055 GVQW2A0A096LPI5 108 aaPredicted RBP2.86□□□□□ -1.95
VPS41-209ENST00000457055 VPS13DQ5THJ4 4388 aa2.86□□□□□ -1.95
VPS41-209ENST00000457055 DNAH17Q9UFH2 4485 aa2.85□□□□□ -1.95
VPS41-209ENST00000457055 PKHD1P08F94 4074 aa2.84□□□□□ -1.95
VPS41-209ENST00000457055 MINOS1Q5TGZ0 78 aa2.84□□□□□ -1.95
VPS41-209ENST00000457055 CRIPTQ9P021 101 aa2.84□□□□□ -1.95
VPS41-209ENST00000457055 K7EQZ3 153 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms