RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 RETNLBQ9BQ08 111 aa7.38□□□□□ -1.23
COL27A1-202ENST00000451716 RPL37AP61513 92 aaKnown RBP7.38□□□□□ -1.23
COL27A1-202ENST00000451716 SPRR1BP22528 89 aa7.37□□□□□ -1.23
COL27A1-202ENST00000451716 CASC2Q6XLA1 102 aa7.37□□□□□ -1.23
COL27A1-202ENST00000451716 DNAH6Q9C0G6 4158 aa7.37□□□□□ -1.23
COL27A1-202ENST00000451716 NDUFB1O75438 58 aa7.36□□□□□ -1.23
COL27A1-202ENST00000451716 IGLV9-49A0A0B4J1Y8 123 aa7.35□□□□□ -1.23
COL27A1-202ENST00000451716 C1orf134Q5TEV5 83 aa7.34□□□□□ -1.23
COL27A1-202ENST00000451716 PSORS1C2Q9UIG4 136 aa7.34□□□□□ -1.23
COL27A1-202ENST00000451716 IGLV5-52A0A0A0MRZ9 124 aa7.34□□□□□ -1.23
COL27A1-202ENST00000451716 ANAPC11Q9NYG5 84 aa7.34□□□□□ -1.24
COL27A1-202ENST00000451716 PLA2G1BP04054 148 aaKnown RBP7.33□□□□□ -1.24
COL27A1-202ENST00000451716 SPINK7P58062 85 aa7.33□□□□□ -1.24
COL27A1-202ENST00000451716 WFDC13Q8IUB5 93 aa7.32□□□□□ -1.24
COL27A1-202ENST00000451716 HYDINQ4G0P3 5121 aa7.3□□□□□ -1.24
COL27A1-202ENST00000451716 DNAH11Q96DT5 4516 aa7.3□□□□□ -1.24
COL27A1-202ENST00000451716 PLAC8Q9NZF1 115 aa7.3□□□□□ -1.24
COL27A1-202ENST00000451716 DNAH5Q8TE73 4624 aa7.3□□□□□ -1.24
COL27A1-202ENST00000451716 LINC00472Q9H8W2 130 aa7.28□□□□□ -1.24
COL27A1-202ENST00000451716 KRTAP10-2P60368 255 aa7.26□□□□□ -1.25
COL27A1-202ENST00000451716 SPAG11AQ6PDA7 123 aa7.26□□□□□ -1.25
COL27A1-202ENST00000451716 ZNF861PO60384 105 aa7.25□□□□□ -1.25
COL27A1-202ENST00000451716 LINC00483Q53H64 154 aa7.24□□□□□ -1.25
COL27A1-202ENST00000451716 COA5Q86WW8 74 aa7.24□□□□□ -1.25
COL27A1-202ENST00000451716 WWC2-AS2Q96NR7 200 aa7.24□□□□□ -1.25
COL27A1-202ENST00000451716 ALMS1Q8TCU4 4167 aa7.23□□□□□ -1.25
COL27A1-202ENST00000451716 SPANXA2-OT1Q8N9U9 137 aa7.23□□□□□ -1.25
COL27A1-202ENST00000451716 IGHV6-1A0A0B4J1U7 121 aa7.22□□□□□ -1.25
COL27A1-202ENST00000451716 A8MWP4 228 aa7.22□□□□□ -1.25
COL27A1-202ENST00000451716 LINC01558Q9Y6Z2 57 aa7.22□□□□□ -1.25
COL27A1-202ENST00000451716 CSAG1Q6PB30 78 aa7.22□□□□□ -1.25
COL27A1-202ENST00000451716 KRTAP29-1A8MX34 341 aaPredicted RBP7.21□□□□□ -1.26
COL27A1-202ENST00000451716 CIRBP-AS1Q8TBR5 109 aa7.21□□□□□ -1.26
COL27A1-202ENST00000451716 LRP1BQ9NZR2 4599 aa7.2□□□□□ -1.26
COL27A1-202ENST00000451716 Q96NJ1 140 aa7.2□□□□□ -1.26
COL27A1-202ENST00000451716 FAT2Q9NYQ8 4349 aa7.19□□□□□ -1.26
COL27A1-202ENST00000451716 IGLV7-43P04211 117 aa7.19□□□□□ -1.26
COL27A1-202ENST00000451716 PKD1P98161 4303 aa7.18□□□□□ -1.26
COL27A1-202ENST00000451716 ASB16-AS1Q495Z4 193 aa7.17□□□□□ -1.26
COL27A1-202ENST00000451716 MMP24-AS1A0A0U1RRL7 71 aa7.15□□□□□ -1.26
COL27A1-202ENST00000451716 KRTAP10-1P60331 282 aa7.15□□□□□ -1.27
COL27A1-202ENST00000451716 SPINK6Q6UWN8 80 aa7.12□□□□□ -1.27
COL27A1-202ENST00000451716 H0Y9P7 68 aa7.11□□□□□ -1.27
COL27A1-202ENST00000451716 ROMO1P60602 79 aa7.11□□□□□ -1.27
COL27A1-202ENST00000451716 VPS13BQ7Z7G8 4022 aa7.11□□□□□ -1.27
COL27A1-202ENST00000451716 PKHD1P08F94 4074 aa7.11□□□□□ -1.27
COL27A1-202ENST00000451716 A0A087X002 238 aa7.1□□□□□ -1.27
COL27A1-202ENST00000451716 NOTCH2NLQ7Z3S9 236 aa7.1□□□□□ -1.27
COL27A1-202ENST00000451716 C8orf17Q9NRJ1 99 aa7.09□□□□□ -1.27
COL27A1-202ENST00000451716 A0A1B0GVX0 72 aa7.08□□□□□ -1.28
COL27A1-202ENST00000451716 CDK2AP2O75956 126 aa7.08□□□□□ -1.28
COL27A1-202ENST00000451716 Q6ZSA8 131 aa7.07□□□□□ -1.28
COL27A1-202ENST00000451716 SACSQ9NZJ4 4579 aa7.07□□□□□ -1.28
COL27A1-202ENST00000451716 IGLV7-46A0A075B6I9 117 aa7.05□□□□□ -1.28
COL27A1-202ENST00000451716 H3BPC8 53 aa7.03□□□□□ -1.28
COL27A1-202ENST00000451716 KRTAP13-2Q52LG2 175 aa7.03□□□□□ -1.28
COL27A1-202ENST00000451716 KMT2CQ8NEZ4 4911 aaKnown RBP7.02□□□□□ -1.29
COL27A1-202ENST00000451716 KRTAP21-3Q3LHN1 58 aa7.01□□□□□ -1.29
COL27A1-202ENST00000451716 SSBP3-AS1Q7Z2R9 100 aa7.01□□□□□ -1.29
COL27A1-202ENST00000451716 MIR22HGQ0VDD5 57 aa7□□□□□ -1.29
COL27A1-202ENST00000451716 MRPL34Q9BQ48 92 aaKnown RBP7□□□□□ -1.29
COL27A1-202ENST00000451716 PCOTHQ58A44 107 aa7□□□□□ -1.29
COL27A1-202ENST00000451716 TP53AIP1Q9HCN2 124 aa6.98□□□□□ -1.29
COL27A1-202ENST00000451716 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
COL27A1-202ENST00000451716 P0C880 135 aa6.95□□□□□ -1.3
COL27A1-202ENST00000451716 HRES1P13985 223 aa6.95□□□□□ -1.3
COL27A1-202ENST00000451716 DYNC1H1Q14204 4646 aaKnown RBP6.95□□□□□ -1.3
COL27A1-202ENST00000451716 Q5W150 140 aa6.94□□□□□ -1.3
COL27A1-202ENST00000451716 FAT1Q14517 4588 aa6.93□□□□□ -1.3
COL27A1-202ENST00000451716 SMR3BP02814 79 aaPredicted RBP6.93□□□□□ -1.3
COL27A1-202ENST00000451716 SPATA8Q6RVD6 105 aa6.92□□□□□ -1.3
COL27A1-202ENST00000451716 TYMSOSQ8TAI1 123 aa6.88□□□□□ -1.31
COL27A1-202ENST00000451716 KRTAP25-1Q3LHN0 102 aa6.85□□□□□ -1.31
COL27A1-202ENST00000451716 KRTAP13-3Q3SY46 172 aa6.85□□□□□ -1.31
COL27A1-202ENST00000451716 APOBP04114 4563 aaKnown RBP6.85□□□□□ -1.31
COL27A1-202ENST00000451716 KRTAP16-1A8MUX0 517 aa6.84□□□□□ -1.31
COL27A1-202ENST00000451716 RYR2Q92736 4967 aa6.84□□□□□ -1.31
COL27A1-202ENST00000451716 A0A1B0GU69 56 aa6.81□□□□□ -1.32
COL27A1-202ENST00000451716 A0A1B0GVY2 172 aa6.81□□□□□ -1.32
COL27A1-202ENST00000451716 UQCR11O14957 56 aa6.79□□□□□ -1.32
COL27A1-202ENST00000451716 RYR3Q15413 4870 aa6.79□□□□□ -1.32
COL27A1-202ENST00000451716 SPINK1P00995 79 aa6.79□□□□□ -1.32
COL27A1-202ENST00000451716 LINC00304Q8N9R0 145 aa6.77□□□□□ -1.33
COL27A1-202ENST00000451716 FAM229AH3BQW9 127 aa6.76□□□□□ -1.33
COL27A1-202ENST00000451716 A8MUU9 505 aa6.76□□□□□ -1.33
COL27A1-202ENST00000451716 NDUFAF8A1L188 74 aa6.75□□□□□ -1.33
COL27A1-202ENST00000451716 KRTAP10-4P60372 401 aaPredicted RBP6.73□□□□□ -1.33
COL27A1-202ENST00000451716 IGKV2D-30A0A075B6S6 120 aa6.71□□□□□ -1.33
COL27A1-202ENST00000451716 IGKV2-30P06310 120 aa6.71□□□□□ -1.33
COL27A1-202ENST00000451716 C20orf166-AS1Q96NR2 134 aa6.7□□□□□ -1.34
COL27A1-202ENST00000451716 PKHD1L1Q86WI1 4243 aa6.69□□□□□ -1.34
COL27A1-202ENST00000451716 C9orf92A6NGG3 77 aa6.67□□□□□ -1.34
COL27A1-202ENST00000451716 LRP1Q07954 4544 aaKnown RBP6.67□□□□□ -1.34
COL27A1-202ENST00000451716 FLG2Q5D862 2391 aaPredicted RBP6.65□□□□□ -1.34
COL27A1-202ENST00000451716 ACYP2P14621 99 aa6.65□□□□□ -1.35
COL27A1-202ENST00000451716 RPS29P62273 56 aaKnown RBP6.64□□□□□ -1.35
COL27A1-202ENST00000451716 DMAC1Q96GE9 116 aa6.64□□□□□ -1.35
COL27A1-202ENST00000451716 CRIPTQ9P021 101 aa6.63□□□□□ -1.35
COL27A1-202ENST00000451716 HSPG2P98160 4391 aa6.61□□□□□ -1.35
COL27A1-202ENST00000451716 SPINT4Q6UDR6 99 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms