RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 Q96NJ1 140 aa11.62□□□□□ -0.55
HMGA1-205ENST00000447654 MRPL34Q9BQ48 92 aaKnown RBP11.61□□□□□ -0.55
HMGA1-205ENST00000447654 STARD9Q9P2P6 4700 aa11.61□□□□□ -0.55
HMGA1-205ENST00000447654 A0A1B0GU69 56 aa11.6□□□□□ -0.55
HMGA1-205ENST00000447654 A0A1B0GVX0 72 aa11.58□□□□□ -0.56
HMGA1-205ENST00000447654 UQCR11O14957 56 aa11.58□□□□□ -0.56
HMGA1-205ENST00000447654 MIR22HGQ0VDD5 57 aa11.57□□□□□ -0.56
HMGA1-205ENST00000447654 MEGF8Q7Z7M0 2845 aa11.57□□□□□ -0.56
HMGA1-205ENST00000447654 CSAG1Q6PB30 78 aa11.54□□□□□ -0.56
HMGA1-205ENST00000447654 DMAC1Q96GE9 116 aa11.54□□□□□ -0.56
HMGA1-205ENST00000447654 ALMS1Q8TCU4 4167 aa11.53□□□□□ -0.56
HMGA1-205ENST00000447654 APLNQ9ULZ1 77 aa11.53□□□□□ -0.56
HMGA1-205ENST00000447654 CDK2AP2O75956 126 aa11.5□□□□□ -0.57
HMGA1-205ENST00000447654 IGHV6-1A0A0B4J1U7 121 aa11.48□□□□□ -0.57
HMGA1-205ENST00000447654 KRTAP13-3Q3SY46 172 aa11.48□□□□□ -0.57
HMGA1-205ENST00000447654 VPS13DQ5THJ4 4388 aa11.46□□□□□ -0.57
HMGA1-205ENST00000447654 A0A096LNI7 61 aa11.45□□□□□ -0.58
HMGA1-205ENST00000447654 KMT2AQ03164 3969 aa11.45□□□□□ -0.58
HMGA1-205ENST00000447654 UBE2DNLQ8IWF7 75 aa11.44□□□□□ -0.58
HMGA1-205ENST00000447654 SRRM2Q9UQ35 2752 aaKnown RBP11.41□□□□□ -0.58
HMGA1-205ENST00000447654 DNAH2Q9P225 4427 aa11.39□□□□□ -0.59
HMGA1-205ENST00000447654 ZNF861PO60384 105 aa11.39□□□□□ -0.59
HMGA1-205ENST00000447654 Q5W150 140 aa11.35□□□□□ -0.59
HMGA1-205ENST00000447654 HECTD4Q9Y4D8 3996 aa11.35□□□□□ -0.59
HMGA1-205ENST00000447654 TGP01266 2768 aa11.34□□□□□ -0.59
HMGA1-205ENST00000447654 KRTAP13-1Q8IUC0 172 aa11.34□□□□□ -0.59
HMGA1-205ENST00000447654 C1orf134Q5TEV5 83 aa11.33□□□□□ -0.6
HMGA1-205ENST00000447654 KRTAP11-1Q8IUC1 163 aa11.33□□□□□ -0.6
HMGA1-205ENST00000447654 CHTF8P0CG12 524 aa11.32□□□□□ -0.6
HMGA1-205ENST00000447654 NBDYA0A0U1RRE5 68 aa11.31□□□□□ -0.6
HMGA1-205ENST00000447654 LINC00483Q53H64 154 aa11.31□□□□□ -0.6
HMGA1-205ENST00000447654 Q6ZRN7 208 aaPredicted RBP11.29□□□□□ -0.6
HMGA1-205ENST00000447654 NUPR2A6NF83 97 aa11.28□□□□□ -0.6
HMGA1-205ENST00000447654 NOTCH2NLQ7Z3S9 236 aa11.28□□□□□ -0.6
HMGA1-205ENST00000447654 ROMO1P60602 79 aa11.26□□□□□ -0.61
HMGA1-205ENST00000447654 IGLV9-49A0A0B4J1Y8 123 aa11.25□□□□□ -0.61
HMGA1-205ENST00000447654 PANO1I0J062 215 aa11.24□□□□□ -0.61
HMGA1-205ENST00000447654 IGLV7-43P04211 117 aa11.24□□□□□ -0.61
HMGA1-205ENST00000447654 KRTAP25-1Q3LHN0 102 aa11.23□□□□□ -0.61
HMGA1-205ENST00000447654 ZNF706Q9Y5V0 76 aaPredicted RBP11.23□□□□□ -0.61
HMGA1-205ENST00000447654 C14orf177Q52M58 125 aa11.21□□□□□ -0.61
HMGA1-205ENST00000447654 FAM229AH3BQW9 127 aa11.21□□□□□ -0.62
HMGA1-205ENST00000447654 DNAH17Q9UFH2 4485 aa11.2□□□□□ -0.62
HMGA1-205ENST00000447654 FRAS1Q86XX4 4008 aa11.18□□□□□ -0.62
HMGA1-205ENST00000447654 IGKV2-30P06310 120 aa11.17□□□□□ -0.62
HMGA1-205ENST00000447654 DNAH8Q96JB1 4490 aa11.15□□□□□ -0.62
HMGA1-205ENST00000447654 WWC2-AS2Q96NR7 200 aa11.14□□□□□ -0.63
HMGA1-205ENST00000447654 DNAH6Q9C0G6 4158 aa11.12□□□□□ -0.63
HMGA1-205ENST00000447654 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.12□□□□□ -0.63
HMGA1-205ENST00000447654 A8MUU9 505 aa11.11□□□□□ -0.63
HMGA1-205ENST00000447654 A0A087WTM6 91 aa11.09□□□□□ -0.63
HMGA1-205ENST00000447654 DNAH5Q8TE73 4624 aa11.05□□□□□ -0.64
HMGA1-205ENST00000447654 SPACA4Q8TDM5 124 aa11.04□□□□□ -0.64
HMGA1-205ENST00000447654 LY6G6CO95867 125 aa11.04□□□□□ -0.64
HMGA1-205ENST00000447654 DNAH11Q96DT5 4516 aa11.04□□□□□ -0.64
HMGA1-205ENST00000447654 HYDINQ4G0P3 5121 aa11.03□□□□□ -0.64
HMGA1-205ENST00000447654 IGLV5-52A0A0A0MRZ9 124 aa11.03□□□□□ -0.64
HMGA1-205ENST00000447654 IGKV2D-30A0A075B6S6 120 aa10.99□□□□□ -0.65
HMGA1-205ENST00000447654 SPINK6Q6UWN8 80 aa10.99□□□□□ -0.65
HMGA1-205ENST00000447654 KMT2CQ8NEZ4 4911 aaKnown RBP10.98□□□□□ -0.65
HMGA1-205ENST00000447654 LINC00304Q8N9R0 145 aa10.98□□□□□ -0.65
HMGA1-205ENST00000447654 FAT2Q9NYQ8 4349 aa10.94□□□□□ -0.66
HMGA1-205ENST00000447654 RYR3Q15413 4870 aa10.94□□□□□ -0.66
HMGA1-205ENST00000447654 PKD1P98161 4303 aa10.92□□□□□ -0.66
HMGA1-205ENST00000447654 H0YAA0 97 aa10.89□□□□□ -0.67
HMGA1-205ENST00000447654 PSORS1C2Q9UIG4 136 aa10.88□□□□□ -0.67
HMGA1-205ENST00000447654 Q6ZSA8 131 aa10.86□□□□□ -0.67
HMGA1-205ENST00000447654 LRP1BQ9NZR2 4599 aa10.85□□□□□ -0.67
HMGA1-205ENST00000447654 P0C880 135 aa10.85□□□□□ -0.67
HMGA1-205ENST00000447654 KRTAP10-2P60368 255 aa10.83□□□□□ -0.68
HMGA1-205ENST00000447654 SSBP3-AS1Q7Z2R9 100 aa10.83□□□□□ -0.68
HMGA1-205ENST00000447654 ANAPC11Q9NYG5 84 aa10.82□□□□□ -0.68
HMGA1-205ENST00000447654 KRTAP16-1A8MUX0 517 aa10.79□□□□□ -0.68
HMGA1-205ENST00000447654 SACSQ9NZJ4 4579 aa10.76□□□□□ -0.69
HMGA1-205ENST00000447654 CIRBP-AS1Q8TBR5 109 aa10.76□□□□□ -0.69
HMGA1-205ENST00000447654 A0A1B0GU33 70 aa10.75□□□□□ -0.69
HMGA1-205ENST00000447654 K7ERS5 55 aa10.75□□□□□ -0.69
HMGA1-205ENST00000447654 PKHD1P08F94 4074 aa10.74□□□□□ -0.69
HMGA1-205ENST00000447654 VPS13BQ7Z7G8 4022 aa10.71□□□□□ -0.7
HMGA1-205ENST00000447654 SPINK1P00995 79 aa10.7□□□□□ -0.7
HMGA1-205ENST00000447654 RYR2Q92736 4967 aa10.69□□□□□ -0.7
HMGA1-205ENST00000447654 H1FX-AS1Q4G0G2 97 aa10.69□□□□□ -0.7
HMGA1-205ENST00000447654 BIRC6Q9NR09 4857 aa10.67□□□□□ -0.7
HMGA1-205ENST00000447654 KRTAP10-1P60331 282 aa10.66□□□□□ -0.7
HMGA1-205ENST00000447654 TYMSOSQ8TAI1 123 aa10.58□□□□□ -0.72
HMGA1-205ENST00000447654 EPPK1P58107 5090 aaKnown RBP10.56□□□□□ -0.72
HMGA1-205ENST00000447654 Q8N1X5 172 aa10.55□□□□□ -0.72
HMGA1-205ENST00000447654 DYNC1H1Q14204 4646 aaKnown RBP10.52□□□□□ -0.73
HMGA1-205ENST00000447654 SPINT4Q6UDR6 99 aa10.52□□□□□ -0.73
HMGA1-205ENST00000447654 C20orf166-AS1Q96NR2 134 aa10.5□□□□□ -0.73
HMGA1-205ENST00000447654 CRIPTQ9P021 101 aa10.48□□□□□ -0.73
HMGA1-205ENST00000447654 KRTAP13-2Q52LG2 175 aa10.45□□□□□ -0.74
HMGA1-205ENST00000447654 KRTAP15-1Q3LI76 137 aa10.44□□□□□ -0.74
HMGA1-205ENST00000447654 FAT1Q14517 4588 aa10.44□□□□□ -0.74
HMGA1-205ENST00000447654 NDUFAF8A1L188 74 aa10.4□□□□□ -0.74
HMGA1-205ENST00000447654 KRTAP1-4P0C5Y4 121 aa10.4□□□□□ -0.74
HMGA1-205ENST00000447654 APOBP04114 4563 aaKnown RBP10.39□□□□□ -0.75
HMGA1-205ENST00000447654 COX6B2Q6YFQ2 88 aa10.36□□□□□ -0.75
HMGA1-205ENST00000447654 RPL37P61927 97 aaKnown RBP10.33□□□□□ -0.76
HMGA1-205ENST00000447654 TPRXLQ17RH7 258 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms