RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 A0A1W2PPM0 123 aa3.76□□□□□ -1.81
LIMCH1-204ENST00000446625 RBM12B-AS1Q9P1G2 102 aa3.76□□□□□ -1.81
LIMCH1-204ENST00000446625 TRBV7-6A0A0J9YX20 115 aa3.75□□□□□ -1.81
LIMCH1-204ENST00000446625 F8WEM9 126 aa3.75□□□□□ -1.81
LIMCH1-204ENST00000446625 TRIAP1O43715 76 aa3.75□□□□□ -1.81
LIMCH1-204ENST00000446625 SMIM11BQ8TCY0 68 aa3.75□□□□□ -1.81
LIMCH1-204ENST00000446625 KMT2DO14686 5537 aa3.74□□□□□ -1.81
LIMCH1-204ENST00000446625 Q8N9P0 234 aaPredicted RBP3.74□□□□□ -1.81
LIMCH1-204ENST00000446625 LST1O00453 97 aa3.73□□□□□ -1.81
LIMCH1-204ENST00000446625 FABP2P12104 132 aa3.73□□□□□ -1.81
LIMCH1-204ENST00000446625 PSMB2P49721 201 aa3.73□□□□□ -1.81
LIMCH1-204ENST00000446625 CLEC2BQ92478 149 aa3.73□□□□□ -1.81
LIMCH1-204ENST00000446625 K7EP34 96 aa3.72□□□□□ -1.81
LIMCH1-204ENST00000446625 VAMP3Q15836 100 aa3.72□□□□□ -1.81
LIMCH1-204ENST00000446625 Q6JHZ5 121 aa3.72□□□□□ -1.81
LIMCH1-204ENST00000446625 Q6ZQY7 126 aa3.72□□□□□ -1.81
LIMCH1-204ENST00000446625 SPCS1Q9Y6A9 102 aa3.72□□□□□ -1.81
LIMCH1-204ENST00000446625 LYRM7Q5U5X0 104 aa3.71□□□□□ -1.82
LIMCH1-204ENST00000446625 NOTCH2NLQ7Z3S9 236 aa3.71□□□□□ -1.82
LIMCH1-204ENST00000446625 H0YGX0 51 aa3.7□□□□□ -1.82
LIMCH1-204ENST00000446625 COX6CP09669 75 aa3.7□□□□□ -1.82
LIMCH1-204ENST00000446625 SCGB1C2P0DMR2 95 aa3.7□□□□□ -1.82
LIMCH1-204ENST00000446625 DSCR10P59022 87 aa3.7□□□□□ -1.82
LIMCH1-204ENST00000446625 FAM218AQ96MZ4 157 aa3.7□□□□□ -1.82
LIMCH1-204ENST00000446625 A8MWP4 228 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 H3BMG7 143 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 UBE2V1Q13404 147 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 OCIAD2Q56VL3 154 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 LINC00575Q6W349 94 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 GTF2H5Q6ZYL4 71 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 KRTAP3-1Q9BYR8 98 aa3.69□□□□□ -1.82
LIMCH1-204ENST00000446625 hADV29S1A0JD25 119 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 TRACP01848 142 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 KRTAP2-3P0C7H8 128 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 ATXN8Q156A1 80 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 KRTAP2-4Q9BYR9 128 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 PRO0461Q9UI25 63 aa3.68□□□□□ -1.82
LIMCH1-204ENST00000446625 A0A1B0GX51 115 aa3.67□□□□□ -1.82
LIMCH1-204ENST00000446625 KRTAP5-9P26371 169 aa3.67□□□□□ -1.82
LIMCH1-204ENST00000446625 C9JAW5 83 aa3.66□□□□□ -1.82
LIMCH1-204ENST00000446625 MTURNQ8N3F0 131 aa3.66□□□□□ -1.82
LIMCH1-204ENST00000446625 A0A1B0GV72 72 aa3.65□□□□□ -1.83
LIMCH1-204ENST00000446625 A6NN06 94 aa3.65□□□□□ -1.83
LIMCH1-204ENST00000446625 SS18L2Q9UHA2 77 aa3.65□□□□□ -1.83
LIMCH1-204ENST00000446625 F8W1H4 67 aa3.64□□□□□ -1.83
LIMCH1-204ENST00000446625 H3BT86 120 aa3.64□□□□□ -1.83
LIMCH1-204ENST00000446625 SIGMAR1Q99720 223 aa3.64□□□□□ -1.83
LIMCH1-204ENST00000446625 A0A087WSZ3 146 aa3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 DNAL4O96015 105 aa3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 BAALC-AS2P0C853 105 aa3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 LINC00313P59037 77 aa3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 ANKRD29Q8N6D5 301 aa3.63□□□□□ -1.83
LIMCH1-204ENST00000446625 SNCGO76070 127 aa3.62□□□□□ -1.83
LIMCH1-204ENST00000446625 ORMDL1Q9P0S3 153 aa3.62□□□□□ -1.83
LIMCH1-204ENST00000446625 ETDBQ3ZM63 59 aa3.61□□□□□ -1.83
LIMCH1-204ENST00000446625 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
LIMCH1-204ENST00000446625 H3BQ85 93 aa3.6□□□□□ -1.83
LIMCH1-204ENST00000446625 TMEM256-PLSCR3K7ERE1 68 aa3.6□□□□□ -1.83
LIMCH1-204ENST00000446625 TEN1Q86WV5 123 aa3.6□□□□□ -1.83
LIMCH1-204ENST00000446625 DEFB116Q30KQ4 102 aa3.59□□□□□ -1.83
LIMCH1-204ENST00000446625 PPDPFLQ8WWR9 84 aa3.59□□□□□ -1.83
LIMCH1-204ENST00000446625 NDUFV3P56181 108 aaKnown RBP3.58□□□□□ -1.84
LIMCH1-204ENST00000446625 SPINK7P58062 85 aa3.58□□□□□ -1.84
LIMCH1-204ENST00000446625 A0A1W2PNM2 257 aa3.57□□□□□ -1.84
LIMCH1-204ENST00000446625 MT1BP07438 61 aa3.57□□□□□ -1.84
LIMCH1-204ENST00000446625 JMJD7-PLA2G4BH0Y9G9 81 aa3.56□□□□□ -1.84
LIMCH1-204ENST00000446625 IGKV4-1P06312 121 aa3.56□□□□□ -1.84
LIMCH1-204ENST00000446625 IGHV6-1A0A0B4J1U7 121 aa3.55□□□□□ -1.84
LIMCH1-204ENST00000446625 TRBV7-4A0A0J9YYF1 115 aa3.55□□□□□ -1.84
LIMCH1-204ENST00000446625 KRTAP10-5P60370 271 aa3.55□□□□□ -1.84
LIMCH1-204ENST00000446625 WFDC13Q8IUB5 93 aa3.55□□□□□ -1.84
LIMCH1-204ENST00000446625 C14orf132Q9NPU4 83 aa3.55□□□□□ -1.84
LIMCH1-204ENST00000446625 LOC110117498A0A087WWA1 95 aa3.54□□□□□ -1.84
LIMCH1-204ENST00000446625 RBM3P98179 157 aaKnown RBP3.54□□□□□ -1.84
LIMCH1-204ENST00000446625 ZCCHC13Q8WW36 166 aaKnown RBP3.54□□□□□ -1.84
LIMCH1-204ENST00000446625 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
LIMCH1-204ENST00000446625 KRTAP2-1Q9BYU5 128 aa3.54□□□□□ -1.84
LIMCH1-204ENST00000446625 Q6ZQT0 140 aa3.53□□□□□ -1.84
LIMCH1-204ENST00000446625 CCKP06307 115 aa3.52□□□□□ -1.85
LIMCH1-204ENST00000446625 SPRR2EP22531 72 aa3.52□□□□□ -1.85
LIMCH1-204ENST00000446625 SPRR2BP35325 72 aa3.52□□□□□ -1.85
LIMCH1-204ENST00000446625 SPRR2AP35326 72 aa3.52□□□□□ -1.85
LIMCH1-204ENST00000446625 DSCR8Q96T75 97 aa3.52□□□□□ -1.85
LIMCH1-204ENST00000446625 K7ERU9 68 aa3.51□□□□□ -1.85
LIMCH1-204ENST00000446625 PDE6GP18545 87 aa3.51□□□□□ -1.85
LIMCH1-204ENST00000446625 Q5VV11 94 aa3.51□□□□□ -1.85
LIMCH1-204ENST00000446625 VPS25Q9BRG1 176 aa3.51□□□□□ -1.85
LIMCH1-204ENST00000446625 FAM240AA0A1B0GVK7 77 aa3.5□□□□□ -1.85
LIMCH1-204ENST00000446625 J3QR89 54 aa3.5□□□□□ -1.85
LIMCH1-204ENST00000446625 C21orf62-AS1Q17RA5 79 aa3.5□□□□□ -1.85
LIMCH1-204ENST00000446625 KRTAP19-8Q3LI54 63 aa3.5□□□□□ -1.85
LIMCH1-204ENST00000446625 H1FX-AS1Q4G0G2 97 aa3.49□□□□□ -1.85
LIMCH1-204ENST00000446625 SPRR2FQ96RM1 72 aa3.49□□□□□ -1.85
LIMCH1-204ENST00000446625 LINC00472Q9H8W2 130 aa3.49□□□□□ -1.85
LIMCH1-204ENST00000446625 ACYP1P07311 99 aa3.48□□□□□ -1.85
LIMCH1-204ENST00000446625 A0A1B0GVX0 72 aa3.47□□□□□ -1.85
LIMCH1-204ENST00000446625 A0A1B0GW54 56 aa3.47□□□□□ -1.85
LIMCH1-204ENST00000446625 KRTAP23-1A1A580 65 aa3.47□□□□□ -1.85
LIMCH1-204ENST00000446625 C8orf87E5RJ46 101 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms