RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 IGLV5-48A0A075B6I7 105 aa4.96□□□□□ -1.62
CCDC39-201ENST00000442201 A6NED7 52 aa4.96□□□□□ -1.62
CCDC39-201ENST00000442201 KRTAP13-1Q8IUC0 172 aa4.96□□□□□ -1.62
CCDC39-201ENST00000442201 SMIM29Q86T20 159 aa4.95□□□□□ -1.62
CCDC39-201ENST00000442201 Q8N377 158 aa4.95□□□□□ -1.62
CCDC39-201ENST00000442201 PLA2G1BP04054 148 aaKnown RBP4.95□□□□□ -1.62
CCDC39-201ENST00000442201 DNAH5Q8TE73 4624 aa4.94□□□□□ -1.62
CCDC39-201ENST00000442201 PKD1P98161 4303 aa4.94□□□□□ -1.62
CCDC39-201ENST00000442201 LINC00208Q96KT6 92 aa4.94□□□□□ -1.62
CCDC39-201ENST00000442201 ZNF861PO60384 105 aa4.93□□□□□ -1.62
CCDC39-201ENST00000442201 IGLV7-43P04211 117 aa4.92□□□□□ -1.62
CCDC39-201ENST00000442201 MP68P56378 58 aa4.91□□□□□ -1.62
CCDC39-201ENST00000442201 LINC01558Q9Y6Z2 57 aa4.91□□□□□ -1.62
CCDC39-201ENST00000442201 A0A1B0GW54 56 aa4.91□□□□□ -1.62
CCDC39-201ENST00000442201 SPRR1BP22528 89 aa4.9□□□□□ -1.62
CCDC39-201ENST00000442201 ZNF706Q9Y5V0 76 aaPredicted RBP4.9□□□□□ -1.62
CCDC39-201ENST00000442201 DNAH8Q96JB1 4490 aa4.89□□□□□ -1.63
CCDC39-201ENST00000442201 SPRR4Q96PI1 79 aa4.89□□□□□ -1.63
CCDC39-201ENST00000442201 PRR4Q16378 134 aa4.88□□□□□ -1.63
CCDC39-201ENST00000442201 PRAC1Q96KF2 57 aa4.88□□□□□ -1.63
CCDC39-201ENST00000442201 CASC2Q6XLA1 102 aa4.87□□□□□ -1.63
CCDC39-201ENST00000442201 PKHD1P08F94 4074 aa4.87□□□□□ -1.63
CCDC39-201ENST00000442201 SRRM2Q9UQ35 2752 aaKnown RBP4.87□□□□□ -1.63
CCDC39-201ENST00000442201 H3BPC8 53 aa4.87□□□□□ -1.63
CCDC39-201ENST00000442201 LRP1BQ9NZR2 4599 aa4.86□□□□□ -1.63
CCDC39-201ENST00000442201 LINC00483Q53H64 154 aa4.86□□□□□ -1.63
CCDC39-201ENST00000442201 DYNC1H1Q14204 4646 aaKnown RBP4.86□□□□□ -1.63
CCDC39-201ENST00000442201 RPL37AP61513 92 aaKnown RBP4.85□□□□□ -1.63
CCDC39-201ENST00000442201 IGLV8-61A0A075B6I0 122 aa4.85□□□□□ -1.63
CCDC39-201ENST00000442201 SMR3BP02814 79 aaPredicted RBP4.85□□□□□ -1.63
CCDC39-201ENST00000442201 RYR3Q15413 4870 aa4.85□□□□□ -1.63
CCDC39-201ENST00000442201 SPINK7P58062 85 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 IGFL1Q6UW32 110 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 IGLV9-49A0A0B4J1Y8 123 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 DSCR10P59022 87 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 ADM2Q7Z4H4 148 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 COA5Q86WW8 74 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 Q8NBF4 154 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 ANAPC11Q9NYG5 84 aa4.83□□□□□ -1.64
CCDC39-201ENST00000442201 A0A1W2PNM2 257 aa4.82□□□□□ -1.64
CCDC39-201ENST00000442201 A0A0G2JQZ4 141 aa4.81□□□□□ -1.64
CCDC39-201ENST00000442201 CDK2AP2O75956 126 aa4.8□□□□□ -1.64
CCDC39-201ENST00000442201 SPINK6Q6UWN8 80 aa4.8□□□□□ -1.64
CCDC39-201ENST00000442201 IGLV7-46A0A075B6I9 117 aa4.8□□□□□ -1.64
CCDC39-201ENST00000442201 APOBP04114 4563 aaKnown RBP4.78□□□□□ -1.64
CCDC39-201ENST00000442201 FAM229AH3BQW9 127 aa4.78□□□□□ -1.64
CCDC39-201ENST00000442201 K7EQZ3 153 aa4.78□□□□□ -1.64
CCDC39-201ENST00000442201 KRTAP1-4P0C5Y4 121 aa4.77□□□□□ -1.65
CCDC39-201ENST00000442201 KRTAP10-4P60372 401 aaPredicted RBP4.77□□□□□ -1.65
CCDC39-201ENST00000442201 RETNLBQ9BQ08 111 aa4.77□□□□□ -1.65
CCDC39-201ENST00000442201 SSBP3-AS1Q7Z2R9 100 aa4.77□□□□□ -1.65
CCDC39-201ENST00000442201 A0A087WSZ3 146 aa4.77□□□□□ -1.65
CCDC39-201ENST00000442201 KRTAP29-1A8MX34 341 aaPredicted RBP4.75□□□□□ -1.65
CCDC39-201ENST00000442201 VPS13BQ7Z7G8 4022 aa4.75□□□□□ -1.65
CCDC39-201ENST00000442201 KRTAP13-2Q52LG2 175 aa4.74□□□□□ -1.65
CCDC39-201ENST00000442201 IGHV6-1A0A0B4J1U7 121 aa4.74□□□□□ -1.65
CCDC39-201ENST00000442201 H0Y9P7 68 aa4.74□□□□□ -1.65
CCDC39-201ENST00000442201 FAT1Q14517 4588 aa4.73□□□□□ -1.65
CCDC39-201ENST00000442201 Q5VSD8 79 aa4.73□□□□□ -1.65
CCDC39-201ENST00000442201 SPAG11AQ6PDA7 123 aa4.73□□□□□ -1.65
CCDC39-201ENST00000442201 TYMSOSQ8TAI1 123 aa4.72□□□□□ -1.65
CCDC39-201ENST00000442201 NOTCH2NLQ7Z3S9 236 aa4.7□□□□□ -1.66
CCDC39-201ENST00000442201 CSAG1Q6PB30 78 aa4.7□□□□□ -1.66
CCDC39-201ENST00000442201 SPATA8Q6RVD6 105 aa4.7□□□□□ -1.66
CCDC39-201ENST00000442201 Q8N1X5 172 aa4.69□□□□□ -1.66
CCDC39-201ENST00000442201 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 ROMO1P60602 79 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 DEFB116Q30KQ4 102 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 LINC00472Q9H8W2 130 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 HSPG2P98160 4391 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 RYR1P21817 5038 aa4.68□□□□□ -1.66
CCDC39-201ENST00000442201 EPPK1P58107 5090 aaKnown RBP4.68□□□□□ -1.66
CCDC39-201ENST00000442201 KIAA1109Q2LD37 5005 aa4.67□□□□□ -1.66
CCDC39-201ENST00000442201 HRES1P13985 223 aa4.66□□□□□ -1.66
CCDC39-201ENST00000442201 LINC00304Q8N9R0 145 aa4.66□□□□□ -1.66
CCDC39-201ENST00000442201 SPINK1P00995 79 aa4.66□□□□□ -1.66
CCDC39-201ENST00000442201 KRTAP17-1Q9BYP8 105 aa4.66□□□□□ -1.66
CCDC39-201ENST00000442201 Q96NJ1 140 aa4.65□□□□□ -1.67
CCDC39-201ENST00000442201 WFDC13Q8IUB5 93 aa4.64□□□□□ -1.67
CCDC39-201ENST00000442201 A8MWP4 228 aa4.63□□□□□ -1.67
CCDC39-201ENST00000442201 RPS29P62273 56 aaKnown RBP4.62□□□□□ -1.67
CCDC39-201ENST00000442201 KRTAP10-8P60410 259 aa4.6□□□□□ -1.67
CCDC39-201ENST00000442201 A0A1B0GVX0 72 aa4.59□□□□□ -1.68
CCDC39-201ENST00000442201 FLG2Q5D862 2391 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-201ENST00000442201 LOC100996750A0A140TA64 210 aa4.58□□□□□ -1.68
CCDC39-201ENST00000442201 KRTAP4-6Q9BYQ5 205 aa4.58□□□□□ -1.68
CCDC39-201ENST00000442201 P0C880 135 aa4.57□□□□□ -1.68
CCDC39-201ENST00000442201 PKHD1L1Q86WI1 4243 aa4.57□□□□□ -1.68
CCDC39-201ENST00000442201 KRTAP25-1Q3LHN0 102 aa4.56□□□□□ -1.68
CCDC39-201ENST00000442201 LCE2BO14633 110 aa4.56□□□□□ -1.68
CCDC39-201ENST00000442201 KRTAP4-5Q9BYR2 181 aa4.56□□□□□ -1.68
CCDC39-201ENST00000442201 TP53AIP1Q9HCN2 124 aa4.56□□□□□ -1.68
CCDC39-201ENST00000442201 C8orf17Q9NRJ1 99 aa4.56□□□□□ -1.68
CCDC39-201ENST00000442201 MMP24-AS1A0A0U1RRL7 71 aa4.55□□□□□ -1.68
CCDC39-201ENST00000442201 MIR22HGQ0VDD5 57 aa4.55□□□□□ -1.68
CCDC39-201ENST00000442201 PCOTHQ58A44 107 aa4.55□□□□□ -1.68
CCDC39-201ENST00000442201 LRP1Q07954 4544 aaKnown RBP4.54□□□□□ -1.68
CCDC39-201ENST00000442201 MT1HL1P0DM35 61 aa4.54□□□□□ -1.68
CCDC39-201ENST00000442201 BIRC6Q9NR09 4857 aa4.53□□□□□ -1.68
CCDC39-201ENST00000442201 UQCR11O14957 56 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms