RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 SPACA4Q8TDM5 124 aa3.07□□□□□ -1.92
PTPN4-203ENST00000430976 IGKV2D-30A0A075B6S6 120 aa3.07□□□□□ -1.92
PTPN4-203ENST00000430976 IGKV2-30P06310 120 aa3.07□□□□□ -1.92
PTPN4-203ENST00000430976 IGSF10Q6WRI0 2623 aa3.06□□□□□ -1.92
PTPN4-203ENST00000430976 K7EIL1 84 aa3.06□□□□□ -1.92
PTPN4-203ENST00000430976 IGFL1Q6UW32 110 aa3.06□□□□□ -1.92
PTPN4-203ENST00000430976 CFAP46Q8IYW2 2715 aa3.05□□□□□ -1.92
PTPN4-203ENST00000430976 PLAC4Q8WY50 150 aa3.05□□□□□ -1.92
PTPN4-203ENST00000430976 KRTAP29-1A8MX34 341 aaPredicted RBP3.04□□□□□ -1.92
PTPN4-203ENST00000430976 DEFB4AO15263 64 aa3.04□□□□□ -1.92
PTPN4-203ENST00000430976 PRO2289Q9P1D8 64 aa3.04□□□□□ -1.92
PTPN4-203ENST00000430976 COL6A5A8TX70 2615 aa3.04□□□□□ -1.92
PTPN4-203ENST00000430976 TPRXLQ17RH7 258 aa3.03□□□□□ -1.92
PTPN4-203ENST00000430976 DEFB109BQ30KR1 87 aa3.02□□□□□ -1.93
PTPN4-203ENST00000430976 CSMD2Q7Z408 3487 aa3.02□□□□□ -1.93
PTPN4-203ENST00000430976 VPS13CQ709C8 3753 aa3.02□□□□□ -1.93
PTPN4-203ENST00000430976 HIVEP1P15822 2718 aa3.01□□□□□ -1.93
PTPN4-203ENST00000430976 KLK9Q2XQG4 91 aa3.01□□□□□ -1.93
PTPN4-203ENST00000430976 MMP24-AS1A0A0U1RRL7 71 aa3.01□□□□□ -1.93
PTPN4-203ENST00000430976 ZNF469Q96JG9 3925 aaPredicted RBP3□□□□□ -1.93
PTPN4-203ENST00000430976 DNHD1Q96M86 4753 aa2.99□□□□□ -1.93
PTPN4-203ENST00000430976 H0YAA0 97 aa2.99□□□□□ -1.93
PTPN4-203ENST00000430976 RPL37P61927 97 aaKnown RBP2.99□□□□□ -1.93
PTPN4-203ENST00000430976 DCHS2Q6V1P9 2916 aa2.99□□□□□ -1.93
PTPN4-203ENST00000430976 OTOGQ6ZRI0 2925 aa2.99□□□□□ -1.93
PTPN4-203ENST00000430976 A0A1B0GUV1 79 aa2.98□□□□□ -1.93
PTPN4-203ENST00000430976 GVQW2A0A096LPI5 108 aaPredicted RBP2.98□□□□□ -1.93
PTPN4-203ENST00000430976 PRO0255Q9UI72 69 aa2.98□□□□□ -1.93
PTPN4-203ENST00000430976 NSD1Q96L73 2696 aaPredicted RBP2.97□□□□□ -1.93
PTPN4-203ENST00000430976 Q6ZSA8 131 aa2.97□□□□□ -1.93
PTPN4-203ENST00000430976 U3KQA8 63 aa2.97□□□□□ -1.93
PTPN4-203ENST00000430976 H1FX-AS1Q4G0G2 97 aa2.96□□□□□ -1.94
PTPN4-203ENST00000430976 H3BUA1 57 aa2.96□□□□□ -1.94
PTPN4-203ENST00000430976 FBN2P35556 2912 aa2.94□□□□□ -1.94
PTPN4-203ENST00000430976 PDZD2O15018 2839 aa2.91□□□□□ -1.94
PTPN4-203ENST00000430976 MXRA5Q9NR99 2828 aa2.9□□□□□ -1.95
PTPN4-203ENST00000430976 A0A1W2PPR1 153 aa2.9□□□□□ -1.95
PTPN4-203ENST00000430976 ANK2Q01484 3957 aa2.89□□□□□ -1.95
PTPN4-203ENST00000430976 KRTAP24-1Q3LI83 254 aa2.89□□□□□ -1.95
PTPN4-203ENST00000430976 DEFB135Q30KP9 77 aa2.88□□□□□ -1.95
PTPN4-203ENST00000430976 MAPK1IP1LQ8NDC0 245 aa2.88□□□□□ -1.95
PTPN4-203ENST00000430976 NIPBLQ6KC79 2804 aaeCLIP2.86□□□□□ -1.95
PTPN4-203ENST00000430976 PP632Q6XCG6 107 aa2.86□□□□□ -1.95
PTPN4-203ENST00000430976 STAB2Q8WWQ8 2551 aa2.86□□□□□ -1.95
PTPN4-203ENST00000430976 Q6ZRN7 208 aaPredicted RBP2.83□□□□□ -1.96
PTPN4-203ENST00000430976 ANAPC11Q9NYG5 84 aa2.83□□□□□ -1.96
PTPN4-203ENST00000430976 COX6B2Q6YFQ2 88 aa2.82□□□□□ -1.96
PTPN4-203ENST00000430976 COL7A1Q02388 2944 aa2.82□□□□□ -1.96
PTPN4-203ENST00000430976 KRTAP10-8P60410 259 aa2.82□□□□□ -1.96
PTPN4-203ENST00000430976 ITPR2Q14571 2701 aa2.82□□□□□ -1.96
PTPN4-203ENST00000430976 CMYA5Q8N3K9 4069 aa2.81□□□□□ -1.96
PTPN4-203ENST00000430976 FBN3Q75N90 2809 aa2.8□□□□□ -1.96
PTPN4-203ENST00000430976 INE1O15225 51 aa2.8□□□□□ -1.96
PTPN4-203ENST00000430976 FBN1P35555 2871 aaKnown RBP2.8□□□□□ -1.96
PTPN4-203ENST00000430976 SPART-AS1P0CW21 52 aa2.8□□□□□ -1.96
PTPN4-203ENST00000430976 SPRR1AP35321 89 aa2.8□□□□□ -1.96
PTPN4-203ENST00000430976 TGP01266 2768 aa2.79□□□□□ -1.96
PTPN4-203ENST00000430976 ANK3Q12955 4377 aaKnown RBP2.77□□□□□ -1.97
PTPN4-203ENST00000430976 CSMD3Q7Z407 3707 aa2.77□□□□□ -1.97
PTPN4-203ENST00000430976 S4R3F8 94 aa2.76□□□□□ -1.97
PTPN4-203ENST00000430976 ZANQ9Y493 2812 aa2.76□□□□□ -1.97
PTPN4-203ENST00000430976 DEFB124Q8NES8 71 aa2.76□□□□□ -1.97
PTPN4-203ENST00000430976 KRTAP3-1Q9BYR8 98 aa2.76□□□□□ -1.97
PTPN4-203ENST00000430976 TENM2Q9NT68 2774 aa2.75□□□□□ -1.97
PTPN4-203ENST00000430976 KRTAP17-1Q9BYP8 105 aa2.75□□□□□ -1.97
PTPN4-203ENST00000430976 HRNRQ86YZ3 2850 aaPredicted RBP2.75□□□□□ -1.97
PTPN4-203ENST00000430976 KRTAP21-3Q3LHN1 58 aa2.74□□□□□ -1.97
PTPN4-203ENST00000430976 KRTAP7-1Q8IUC3 87 aa2.73□□□□□ -1.97
PTPN4-203ENST00000430976 LINC01556Q5JQF7 62 aa2.72□□□□□ -1.97
PTPN4-203ENST00000430976 XP32Q5T750 250 aa2.7□□□□□ -1.98
PTPN4-203ENST00000430976 SPRR1BP22528 89 aa2.7□□□□□ -1.98
PTPN4-203ENST00000430976 TRRAPQ9Y4A5 3859 aa2.69□□□□□ -1.98
PTPN4-203ENST00000430976 LOC100996750A0A140TA64 210 aa2.69□□□□□ -1.98
PTPN4-203ENST00000430976 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
PTPN4-203ENST00000430976 RYR3Q15413 4870 aa2.69□□□□□ -1.98
PTPN4-203ENST00000430976 PKD1L1Q8TDX9 2849 aa2.69□□□□□ -1.98
PTPN4-203ENST00000430976 PRKDCP78527 4128 aaKnown RBP2.68□□□□□ -1.98
PTPN4-203ENST00000430976 KRTAP13-3Q3SY46 172 aa2.68□□□□□ -1.98
PTPN4-203ENST00000430976 VWFP04275 2813 aa2.67□□□□□ -1.98
PTPN4-203ENST00000430976 DNAH3Q8TD57 4116 aa2.67□□□□□ -1.98
PTPN4-203ENST00000430976 KMT2CQ8NEZ4 4911 aaKnown RBP2.66□□□□□ -1.98
PTPN4-203ENST00000430976 LYSTQ99698 3801 aa2.66□□□□□ -1.98
PTPN4-203ENST00000430976 MEGF8Q7Z7M0 2845 aa2.65□□□□□ -1.99
PTPN4-203ENST00000430976 TENM3Q9P273 2699 aa2.64□□□□□ -1.99
PTPN4-203ENST00000430976 C9orf92A6NGG3 77 aa2.61□□□□□ -1.99
PTPN4-203ENST00000430976 TENM1Q9UKZ4 2725 aa2.6□□□□□ -1.99
PTPN4-203ENST00000430976 KRTAP12-2P59991 146 aa2.6□□□□□ -1.99
PTPN4-203ENST00000430976 DNAH1Q9P2D7 4330 aa2.6□□□□□ -1.99
PTPN4-203ENST00000430976 KRTAP13-4Q3LI77 160 aa2.6□□□□□ -1.99
PTPN4-203ENST00000430976 ALMS1Q8TCU4 4167 aa2.59□□□□□ -1.99
PTPN4-203ENST00000430976 DNAH7Q8WXX0 4024 aa2.58□□□□□ -2
PTPN4-203ENST00000430976 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
PTPN4-203ENST00000430976 EPPK1P58107 5090 aaKnown RBP2.56□□□□□ -2
PTPN4-203ENST00000430976 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
PTPN4-203ENST00000430976 DYNC2H1Q8NCM8 4307 aaKnown RBP2.54□□□□□ -2
PTPN4-203ENST00000430976 KRTAP4-8Q9BYQ9 185 aa2.53□□□□□ -2
PTPN4-203ENST00000430976 HYDINQ4G0P3 5121 aa2.53□□□□□ -2
PTPN4-203ENST00000430976 RYR2Q92736 4967 aa2.53□□□□□ -2.01
PTPN4-203ENST00000430976 HECTD4Q9Y4D8 3996 aa2.52□□□□□ -2.01
PTPN4-203ENST00000430976 KRTAP13-2Q52LG2 175 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms