RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 DNAH7Q8WXX0 4024 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 TRAV23DV6A0A075B6W5 121 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 TRBV7-4A0A0J9YYF1 115 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 FAM236AA0A1B0GUQ0 79 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 FAM236BA0A1B0GV22 79 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 A8MUN3 132 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 CCDC179H3BU77 68 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 M0R378 163 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 ATOX1O00244 68 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 NCR3O14931 201 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 DEFB4AO15263 64 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 CRYGAP11844 174 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 SPRR1AP35321 89 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 ELOF1P60002 83 aaKnown RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 RBM3P98179 157 aaKnown RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 ESRGQ1W209 222 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 C9orf116Q5BN46 136 aaPredicted RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 C1orf195Q5TG92 126 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 CLPSL2Q6UWE3 100 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 Q6ZQT0 140 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 Q6ZRN7 208 aaPredicted RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 WFDC10BQ8IUB3 73 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 SERP2Q8N6R1 65 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 SPACA4Q8TDM5 124 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 DIRC1Q969H9 104 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00526Q96FQ7 95 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 KCNQ1DNQ9H478 68 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 C14orf132Q9NPU4 83 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH2Q9P225 4427 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 STAB1Q9NY15 2570 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 PRKDCP78527 4128 aaKnown RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH8Q96JB1 4490 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 IGLV5-48A0A075B6I7 105 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 DEFB131BA0A096LNP1 70 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 TRAV10A0A0B4J240 114 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 LOC107984640A0A0U1RRK4 108 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 FLNBO75369 2602 aaKnown RBP0.85□□□□□ -2.27
PTPRC-208ENST00000427110 HTN3P15516 51 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 COX7BP24311 80 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 RPS28P62857 69 aaKnown RBP0.85□□□□□ -2.27
PTPRC-208ENST00000427110 KRTAP21-3Q3LHN1 58 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 Q6ZQY7 126 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 SMIM20Q8N5G0 67 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 C3orf56Q8N813 242 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 DSCR8Q96T75 97 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 UBL5Q9BZL1 73 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 XAGE1AQ9HD64 81 aa0.85□□□□□ -2.27
PTPRC-208ENST00000427110 LYSTQ99698 3801 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 COL7A1Q02388 2944 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 HECTD4Q9Y4D8 3996 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 TRAV7A0A075B6U4 112 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 A0A087WVE0 104 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 IGKV3D-7A0A0C4DH55 119 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 K7EIL1 84 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 M0R2N4 97 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 ERC2-IT1O76042 136 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 CNBPP62633 177 aaKnown RBP0.84□□□□□ -2.27
PTPRC-208ENST00000427110 KLKP1Q107X0 134 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 C9orf153Q5TBE3 101 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 Q6ZRX8 168 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 Q6ZSA8 131 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 SPRR4Q96PI1 79 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 SS18L2Q9UHA2 77 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 LAMTOR3Q9UHA4 124 aa0.84□□□□□ -2.27
PTPRC-208ENST00000427110 NBEAL1Q6ZS30 2694 aa0.84□□□□□ -2.28
PTPRC-208ENST00000427110 CSMD3Q7Z407 3707 aa0.84□□□□□ -2.28
PTPRC-208ENST00000427110 NOTCH1P46531 2555 aa0.84□□□□□ -2.28
PTPRC-208ENST00000427110 STARD9Q9P2P6 4700 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 DNAH5Q8TE73 4624 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 COL6A5A8TX70 2615 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 LCE6AA0A183 80 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 ETDCA0A1B0GVM5 59 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 J3KT08 172 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 NDUFC1O43677 76 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 SPRR1BP22528 89 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 HAMPP81172 84 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 C7orf65Q6ZTY9 151 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 DPH3Q96FX2 82 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 CYSTM1Q9H1C7 97 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 APLNQ9ULZ1 77 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 PKIGQ9Y2B9 76 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 DNAH11Q96DT5 4516 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 FRAS1Q86XX4 4008 aa0.83□□□□□ -2.28
PTPRC-208ENST00000427110 TENM2Q9NT68 2774 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 A0A096LNI7 61 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 H7BZZ5 65 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 ATP5EP56381 51 aaPredicted RBP0.82□□□□□ -2.28
PTPRC-208ENST00000427110 RPL37AP61513 92 aaKnown RBP0.82□□□□□ -2.28
PTPRC-208ENST00000427110 NREPQ16612 68 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 C1orf137Q5JT78 98 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 FP248Q71RG6 208 aaPredicted RBP0.82□□□□□ -2.28
PTPRC-208ENST00000427110 C9orf163Q8N9P6 203 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 SERP1Q9Y6X1 66 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 ALMS1Q8TCU4 4167 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 KMT2AQ03164 3969 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 STAB2Q8WWQ8 2551 aa0.82□□□□□ -2.28
PTPRC-208ENST00000427110 SACSQ9NZJ4 4579 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 NBDYA0A0U1RRE5 68 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 FAM236DA0A1B0GTK5 79 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 NUPR2A6NF83 97 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 154.5 ms