RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SLC51BQ86UW2 128 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 STARD9Q9P2P6 4700 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 A0A087WVE0 104 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 A0A0D9SG42 100 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 KRTAP4-16G5E9R7 235 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 SMLR1H3BR10 107 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 C9orf129Q5T035 196 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 TMEM14EPQ6UXP3 125 aa1.46□□□□□ -2.18
CCDC88A-205ENST00000426576 J3QQQ9 107 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 K7EMI3 77 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 ADAMTSL4-AS1Q5T5F5 129 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 Q8N8P6 123 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 FXYD5Q96DB9 178 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 IGLV4-3A0A075B6K6 122 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 C4orf26Q17RF5 130 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 FAM74A3Q4VXF1 159 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 DNLZQ5SXM8 178 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 RYR2Q92736 4967 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 PATE2Q6UY27 113 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 OCC1Q8TAD7 63 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 V9GYV3 84 aa1.45□□□□□ -2.18
CCDC88A-205ENST00000426576 TMEM256-PLSCR3K7ERE1 68 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 PCP4P48539 62 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 NDUFV3P56181 108 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 H7BZZ5 65 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 IGKCP01834 107 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 CSDC2Q9Y534 153 aaKnown RBP1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 TRBV7-6A0A0J9YX20 115 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 FAM74A7A6NL05 159 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 APOC3P02656 99 aa1.44□□□□□ -2.18
CCDC88A-205ENST00000426576 TRAV7A0A075B6U4 112 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 KRTAP13-3Q3SY46 172 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 A8MUU9 505 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 TRBV7-7A0A0K0K1E9 115 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 MPC2O95563 127 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 TRBV6-5A0A0K0K1A5 114 aa1.43□□□□□ -2.18
CCDC88A-205ENST00000426576 MRPL51Q4U2R6 128 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 CXCL6P80162 114 aa1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 MPLKIPQ8TAP9 179 aa1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 SYNE1Q8NF91 8797 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 PLECQ15149 4684 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 MT1HL1P0DM35 61 aa1.42□□□□□ -2.18
CCDC88A-205ENST00000426576 CRIPTQ9P021 101 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 MRPL34Q9BQ48 92 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 H3BS24 57 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 C9orf62Q8N4C0 152 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 KRTAP2-2Q9BYT5 123 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 KRTAP2-1Q9BYU5 128 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 ABCA13Q86UQ4 5058 aa1.41□□□□□ -2.18
CCDC88A-205ENST00000426576 J3QR89 54 aa1.4□□□□□ -2.18
CCDC88A-205ENST00000426576 TMEM258P61165 79 aa1.4□□□□□ -2.18
CCDC88A-205ENST00000426576 C1orf195Q5TG92 126 aa1.4□□□□□ -2.18
CCDC88A-205ENST00000426576 FAT1Q14517 4588 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 A8MU10 97 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 NPYP01303 97 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 HIST1H2BLQ99880 126 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 ATOX1O00244 68 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 ADM2Q7Z4H4 148 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 C11orf52Q96A22 123 aa1.4□□□□□ -2.19
CCDC88A-205ENST00000426576 PPDPFLQ8WWR9 84 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 DYNC1H1Q14204 4646 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 TRAV22A0A0B4J277 110 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 TRBV27A0A0K0K1C4 114 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 K7EN84 100 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 A0A1B0GVX0 72 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 IGLC3P0DOY3 106 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 COX8AP10176 69 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP10-6P60371 365 aaPredicted RBP1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP10-4P60372 401 aaPredicted RBP1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 RPS28P62857 69 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 SMIM26A0A096LP01 95 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 CHCHD1Q96BP2 118 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 TP53AIP1Q9HCN2 124 aa1.39□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP6-3Q3LI67 103 aa1.38□□□□□ -2.19
CCDC88A-205ENST00000426576 APOBP04114 4563 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-205ENST00000426576 LRP1BQ9NZR2 4599 aa1.38□□□□□ -2.19
CCDC88A-205ENST00000426576 LINC00208Q96KT6 92 aa1.38□□□□□ -2.19
CCDC88A-205ENST00000426576 PMCHL2Q9BQD1 86 aa1.38□□□□□ -2.19
CCDC88A-205ENST00000426576 KMT2CQ8NEZ4 4911 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-205ENST00000426576 TNP1P09430 55 aa1.37□□□□□ -2.19
CCDC88A-205ENST00000426576 TRIAP1O43715 76 aa1.37□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP5-11Q6L8G4 156 aa1.37□□□□□ -2.19
CCDC88A-205ENST00000426576 HIGD1BQ9P298 99 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 KMT2DO14686 5537 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 NDUFC2O95298 119 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP12-4P60329 112 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 KCNQ1DNQ9H478 68 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 PCP4L1A6NKN8 68 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 SMIM1B2RUZ4 78 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 MT4P47944 62 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 COL5A1-AS1Q5SY13 56 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 OBSCNQ5VST9 7968 aa1.36□□□□□ -2.19
CCDC88A-205ENST00000426576 C8orf17Q9NRJ1 99 aa1.35□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP13-2Q52LG2 175 aa1.35□□□□□ -2.19
CCDC88A-205ENST00000426576 Q6ZQT0 140 aa1.35□□□□□ -2.19
CCDC88A-205ENST00000426576 LOC101927531A0A1B0GV80 90 aa1.35□□□□□ -2.19
CCDC88A-205ENST00000426576 KRTAP5-8O75690 187 aa1.34□□□□□ -2.19
CCDC88A-205ENST00000426576 C11orf21Q9P2W6 132 aa1.34□□□□□ -2.19
CCDC88A-205ENST00000426576 GTF2H5Q6ZYL4 71 aa1.34□□□□□ -2.19
CCDC88A-205ENST00000426576 LRP1Q07954 4544 aaKnown RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms