RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NBEAL1Q6ZS30 2694 aa5.95□□□□□ -1.46
USP54-205ENST00000424265 MMP24-AS1A0A0U1RRL7 71 aa5.94□□□□□ -1.46
USP54-205ENST00000424265 LINC00483Q53H64 154 aa5.94□□□□□ -1.46
USP54-205ENST00000424265 SPRR1AP35321 89 aa5.93□□□□□ -1.46
USP54-205ENST00000424265 SPINK6Q6UWN8 80 aa5.93□□□□□ -1.46
USP54-205ENST00000424265 C8orf17Q9NRJ1 99 aa5.93□□□□□ -1.46
USP54-205ENST00000424265 MRPL34Q9BQ48 92 aaKnown RBP5.93□□□□□ -1.46
USP54-205ENST00000424265 TYMSOSQ8TAI1 123 aa5.92□□□□□ -1.46
USP54-205ENST00000424265 A8MUU9 505 aa5.91□□□□□ -1.46
USP54-205ENST00000424265 SPINK1P00995 79 aa5.9□□□□□ -1.46
USP54-205ENST00000424265 TENM1Q9UKZ4 2725 aa5.89□□□□□ -1.47
USP54-205ENST00000424265 CRIPTQ9P021 101 aa5.89□□□□□ -1.47
USP54-205ENST00000424265 STAB2Q8WWQ8 2551 aa5.89□□□□□ -1.47
USP54-205ENST00000424265 KRTAP10-2P60368 255 aa5.88□□□□□ -1.47
USP54-205ENST00000424265 C20orf166-AS1Q96NR2 134 aa5.88□□□□□ -1.47
USP54-205ENST00000424265 KRTAP10-1P60331 282 aa5.88□□□□□ -1.47
USP54-205ENST00000424265 SEC61BP60468 96 aaKnown RBP5.87□□□□□ -1.47
USP54-205ENST00000424265 SMR3BP02814 79 aaPredicted RBP5.85□□□□□ -1.47
USP54-205ENST00000424265 AKAP9Q99996 3911 aa5.85□□□□□ -1.47
USP54-205ENST00000424265 SPRR1BP22528 89 aa5.85□□□□□ -1.47
USP54-205ENST00000424265 FBN1P35555 2871 aaKnown RBP5.85□□□□□ -1.47
USP54-205ENST00000424265 LINC00304Q8N9R0 145 aa5.84□□□□□ -1.47
USP54-205ENST00000424265 LINC00472Q9H8W2 130 aa5.84□□□□□ -1.48
USP54-205ENST00000424265 A0A1B0GVX0 72 aa5.83□□□□□ -1.48
USP54-205ENST00000424265 P0C880 135 aa5.83□□□□□ -1.48
USP54-205ENST00000424265 CELSR1Q9NYQ6 3014 aa5.83□□□□□ -1.48
USP54-205ENST00000424265 J3QL48 77 aa5.81□□□□□ -1.48
USP54-205ENST00000424265 CSMD1Q96PZ7 3565 aa5.8□□□□□ -1.48
USP54-205ENST00000424265 KRTAP4-16G5E9R7 235 aaPredicted RBP5.78□□□□□ -1.48
USP54-205ENST00000424265 Q6ZSA8 131 aa5.76□□□□□ -1.49
USP54-205ENST00000424265 Q5VSD8 79 aa5.76□□□□□ -1.49
USP54-205ENST00000424265 CSMD2Q7Z408 3487 aa5.76□□□□□ -1.49
USP54-205ENST00000424265 PANO1I0J062 215 aa5.75□□□□□ -1.49
USP54-205ENST00000424265 IGKV2D-30A0A075B6S6 120 aa5.74□□□□□ -1.49
USP54-205ENST00000424265 IGKV2-30P06310 120 aa5.74□□□□□ -1.49
USP54-205ENST00000424265 VWFP04275 2813 aa5.74□□□□□ -1.49
USP54-205ENST00000424265 TENM3Q9P273 2699 aa5.72□□□□□ -1.49
USP54-205ENST00000424265 A0A1B0GU33 70 aa5.7□□□□□ -1.5
USP54-205ENST00000424265 KRTAP7-1Q8IUC3 87 aa5.7□□□□□ -1.5
USP54-205ENST00000424265 ANAPC11Q9NYG5 84 aa5.69□□□□□ -1.5
USP54-205ENST00000424265 KRTAP13-1Q8IUC0 172 aa5.68□□□□□ -1.5
USP54-205ENST00000424265 Q5W150 140 aa5.67□□□□□ -1.5
USP54-205ENST00000424265 KRTAP11-1Q8IUC1 163 aa5.67□□□□□ -1.5
USP54-205ENST00000424265 RPS29P62273 56 aaKnown RBP5.66□□□□□ -1.5
USP54-205ENST00000424265 ZNF469Q96JG9 3925 aaPredicted RBP5.66□□□□□ -1.5
USP54-205ENST00000424265 Q8N1X5 172 aa5.65□□□□□ -1.5
USP54-205ENST00000424265 SVEP1Q4LDE5 3571 aa5.65□□□□□ -1.5
USP54-205ENST00000424265 A0A1B0GVY2 172 aa5.65□□□□□ -1.51
USP54-205ENST00000424265 Q96NJ1 140 aa5.61□□□□□ -1.51
USP54-205ENST00000424265 TRRAPQ9Y4A5 3859 aa5.58□□□□□ -1.52
USP54-205ENST00000424265 H1FX-AS1Q4G0G2 97 aa5.58□□□□□ -1.52
USP54-205ENST00000424265 PKD1L1Q8TDX9 2849 aa5.57□□□□□ -1.52
USP54-205ENST00000424265 FBN3Q75N90 2809 aa5.57□□□□□ -1.52
USP54-205ENST00000424265 VPS13CQ709C8 3753 aa5.56□□□□□ -1.52
USP54-205ENST00000424265 H0YAA0 97 aa5.55□□□□□ -1.52
USP54-205ENST00000424265 HUWE1Q7Z6Z7 4374 aaKnown RBP5.53□□□□□ -1.52
USP54-205ENST00000424265 ANK2Q01484 3957 aa5.52□□□□□ -1.53
USP54-205ENST00000424265 TENM2Q9NT68 2774 aa5.52□□□□□ -1.53
USP54-205ENST00000424265 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
USP54-205ENST00000424265 CAMK2N1Q7Z7J9 78 aa5.49□□□□□ -1.53
USP54-205ENST00000424265 ALMS1Q8TCU4 4167 aa5.48□□□□□ -1.53
USP54-205ENST00000424265 KRTAP13-2Q52LG2 175 aa5.48□□□□□ -1.53
USP54-205ENST00000424265 A0A0D9SG42 100 aa5.48□□□□□ -1.53
USP54-205ENST00000424265 C9orf92A6NGG3 77 aa5.48□□□□□ -1.53
USP54-205ENST00000424265 RPL37P61927 97 aaKnown RBP5.48□□□□□ -1.53
USP54-205ENST00000424265 FLG2Q5D862 2391 aaPredicted RBP5.48□□□□□ -1.53
USP54-205ENST00000424265 DNAH9Q9NYC9 4486 aa5.48□□□□□ -1.53
USP54-205ENST00000424265 COX6B2Q6YFQ2 88 aa5.47□□□□□ -1.53
USP54-205ENST00000424265 KRTAP1-4P0C5Y4 121 aa5.46□□□□□ -1.54
USP54-205ENST00000424265 C10orf95Q9H7T3 257 aa5.43□□□□□ -1.54
USP54-205ENST00000424265 MEGF8Q7Z7M0 2845 aa5.43□□□□□ -1.54
USP54-205ENST00000424265 TGP01266 2768 aa5.41□□□□□ -1.54
USP54-205ENST00000424265 KRTAP13-3Q3SY46 172 aa5.39□□□□□ -1.55
USP54-205ENST00000424265 DNAH3Q8TD57 4116 aa5.38□□□□□ -1.55
USP54-205ENST00000424265 TPRXLQ17RH7 258 aa5.38□□□□□ -1.55
USP54-205ENST00000424265 CUBNO60494 3623 aa5.35□□□□□ -1.55
USP54-205ENST00000424265 KRTAP10-8P60410 259 aa5.32□□□□□ -1.56
USP54-205ENST00000424265 CMYA5Q8N3K9 4069 aa5.27□□□□□ -1.57
USP54-205ENST00000424265 DMBT1Q9UGM3 2413 aaPredicted RBP5.26□□□□□ -1.57
USP54-205ENST00000424265 DNHD1Q96M86 4753 aa5.25□□□□□ -1.57
USP54-205ENST00000424265 M0R2T5 61 aa5.24□□□□□ -1.57
USP54-205ENST00000424265 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
USP54-205ENST00000424265 PLAC4Q8WY50 150 aa5.23□□□□□ -1.57
USP54-205ENST00000424265 PLECQ15149 4684 aaKnown RBP5.22□□□□□ -1.57
USP54-205ENST00000424265 KRTAP10-4P60372 401 aaPredicted RBP5.19□□□□□ -1.58
USP54-205ENST00000424265 PRKDCP78527 4128 aaKnown RBP5.19□□□□□ -1.58
USP54-205ENST00000424265 DYNC2H1Q8NCM8 4307 aaKnown RBP5.18□□□□□ -1.58
USP54-205ENST00000424265 DNAH6Q9C0G6 4158 aa5.18□□□□□ -1.58
USP54-205ENST00000424265 S4R3F8 94 aa5.17□□□□□ -1.58
USP54-205ENST00000424265 XP32Q5T750 250 aa5.14□□□□□ -1.59
USP54-205ENST00000424265 DNAH1Q9P2D7 4330 aa5.12□□□□□ -1.59
USP54-205ENST00000424265 COL7A1Q02388 2944 aa5.12□□□□□ -1.59
USP54-205ENST00000424265 STARD9Q9P2P6 4700 aa5.12□□□□□ -1.59
USP54-205ENST00000424265 DNAH11Q96DT5 4516 aa5.11□□□□□ -1.59
USP54-205ENST00000424265 DNAH10Q8IVF4 4471 aa5.11□□□□□ -1.59
USP54-205ENST00000424265 DNAH17Q9UFH2 4485 aa5.09□□□□□ -1.6
USP54-205ENST00000424265 MT1HL1P0DM35 61 aa5.08□□□□□ -1.6
USP54-205ENST00000424265 DNAH7Q8WXX0 4024 aa5.06□□□□□ -1.6
USP54-205ENST00000424265 DNAH5Q8TE73 4624 aa5□□□□□ -1.61
USP54-205ENST00000424265 DYNC1H1Q14204 4646 aaKnown RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms