RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 NIPBLQ6KC79 2804 aaeCLIP0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 A0A087WVE0 104 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 G3V318 75 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 COX6A2Q02221 97 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 PRB3Q04118 309 aaPredicted RBP0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 SMIM11BQ8TCY0 68 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 LINC00472Q9H8W2 130 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 UTP20O75691 2785 aaKnown RBP0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH8Q96JB1 4490 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 SETXQ7Z333 2677 aaKnown RBP0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 USP9YO00507 2555 aaPredicted RBP0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 CMYA5Q8N3K9 4069 aa0.88□□□□□ -2.27
HMGB1P49-201ENST00000418882 CFAP46Q8IYW2 2715 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 JMJD1CQ15652 2540 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 TENM2Q9NT68 2774 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 USP9XQ93008 2570 aaPredicted RBP0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH6Q9C0G6 4158 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 TRBV7-4A0A0J9YYF1 115 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 LCE6AA0A183 80 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 LYNX1G3V0Z9 82 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 DEFB1P60022 68 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 SPINK13Q1W4C9 94 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 ENHOQ6UWT2 76 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 RHPN1-AS1Q9BWJ2 59 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 LINC01558Q9Y6Z2 57 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH9Q9NYC9 4486 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH17Q9UFH2 4485 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 ZFYVE26Q68DK2 2539 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 FRAS1Q86XX4 4008 aa0.87□□□□□ -2.27
HMGB1P49-201ENST00000418882 ANKRD17O75179 2603 aaKnown RBP0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 UBR5O95071 2799 aaPredicted RBP0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 NBEAL2Q6ZNJ1 2754 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 DYNC2H1Q8NCM8 4307 aaKnown RBP0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 LRRK2Q5S007 2527 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH10Q8IVF4 4471 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 CHD8Q9HCK8 2581 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 TTC28Q96AY4 2481 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 F8WEM9 126 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 COX17Q14061 63 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 DEFB114Q30KQ6 69 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 Q6ZRX8 168 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 DEFB104AQ8WTQ1 72 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 UBL5Q9BZL1 73 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 PRO3102Q9H379 93 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 VPS13DQ5THJ4 4388 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 PKD1L1Q8TDX9 2849 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 NOTCH1P46531 2555 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 SPTBN4Q9H254 2564 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 CENPEQ02224 2701 aa0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 PRKDCP78527 4128 aaKnown RBP0.86□□□□□ -2.27
HMGB1P49-201ENST00000418882 GCN1Q92616 2671 aaKnown RBP0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 SONP18583 2426 aaKnown RBP0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 ZNF469Q96JG9 3925 aaPredicted RBP0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 LINC00158P58513 81 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 ANK2Q01484 3957 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 NREPQ16612 68 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 DEFB109BQ30KR1 87 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 Q8IZM0 81 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 WFDC9Q8NEX5 89 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH3Q8TD57 4116 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 DNAH2Q9P225 4427 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 CUBNO60494 3623 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 FLNCQ14315 2725 aa0.85□□□□□ -2.27
HMGB1P49-201ENST00000418882 ACACBO00763 2458 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 VWFP04275 2813 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 TRRAPQ9Y4A5 3859 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 HUWE1Q7Z6Z7 4374 aaKnown RBP0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 SETD2Q9BYW2 2564 aaPredicted RBP0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 EPG5Q9HCE0 2579 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 LINC00959A0A1B0GUT2 108 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 COX7BP24311 80 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 HAMPP81172 84 aa0.84□□□□□ -2.27
HMGB1P49-201ENST00000418882 NAV2Q8IVL1 2488 aa0.84□□□□□ -2.28
HMGB1P49-201ENST00000418882 F8P00451 2351 aa0.84□□□□□ -2.28
HMGB1P49-201ENST00000418882 DOPEY1Q5JWR5 2465 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 PKD1L2Q7Z442 2459 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 DNAH7Q8WXX0 4024 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 IGLV5-48A0A075B6I7 105 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 A0A0D9SG42 100 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 UQCR11O14957 56 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 DEFB131AP59861 70 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 SPRR4Q96PI1 79 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 KCNQ1DNQ9H478 68 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 C10orf95Q9H7T3 257 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 TOMM7Q9P0U1 55 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 IGF2RP11717 2491 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 SRRM2Q9UQ35 2752 aaKnown RBP0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 UNC79Q9P2D8 2635 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 DNAH11Q96DT5 4516 aa0.83□□□□□ -2.28
HMGB1P49-201ENST00000418882 COL7A1Q02388 2944 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 HIVEP1P15822 2718 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 MTORP42345 2549 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 AHNAK2Q8IVF2 5795 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 ETDCA0A1B0GVM5 59 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 H3BUX3 64 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 NDUFB1O75438 58 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 HTN1P15515 57 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 DEFB112Q30KQ8 113 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 DEFB124Q8NES8 71 aa0.82□□□□□ -2.28
HMGB1P49-201ENST00000418882 PLAC8Q9NZF1 115 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms