RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FAM236BA0A1B0GV22 79 aa3.75□□□□□ -1.81
USP40-202ENST00000409945 A8MUN3 132 aa3.75□□□□□ -1.81
USP40-202ENST00000409945 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
USP40-202ENST00000409945 SNCGO76070 127 aa3.75□□□□□ -1.81
USP40-202ENST00000409945 LRP1Q07954 4544 aaKnown RBP3.74□□□□□ -1.81
USP40-202ENST00000409945 M0R378 163 aa3.74□□□□□ -1.81
USP40-202ENST00000409945 BAALC-AS2P0C853 105 aa3.74□□□□□ -1.81
USP40-202ENST00000409945 ACYP1P07311 99 aa3.74□□□□□ -1.81
USP40-202ENST00000409945 PRR15Q8IV56 129 aa3.74□□□□□ -1.81
USP40-202ENST00000409945 C3orf22Q8N5N4 141 aa3.74□□□□□ -1.81
USP40-202ENST00000409945 S100A7L2Q5SY68 101 aa3.73□□□□□ -1.81
USP40-202ENST00000409945 MT1HL1P0DM35 61 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 UBR4Q5T4S7 5183 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 ETDCA0A1B0GVM5 59 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 CRYGAP11844 174 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 KRTAP10-8P60410 259 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 KTN1-AS1Q86SY8 53 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 IMUPQ9GZP8 106 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 ORMDL1Q9P0S3 153 aa3.72□□□□□ -1.81
USP40-202ENST00000409945 NCR3O14931 201 aa3.71□□□□□ -1.82
USP40-202ENST00000409945 H3BQ85 93 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 IGLV6-57P01721 117 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 MT-ATP8P03928 68 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 TMEM256-PLSCR3K7ERE1 68 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 KRTAP12-2P59991 146 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 OBSCN-AS1Q96MR7 158 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 HIGD2AQ9BW72 106 aa3.7□□□□□ -1.82
USP40-202ENST00000409945 JMJD7-PLA2G4BH0Y9G9 81 aa3.69□□□□□ -1.82
USP40-202ENST00000409945 ZNF73O43830 326 aaPredicted RBP3.69□□□□□ -1.82
USP40-202ENST00000409945 PRLHP81277 87 aa3.69□□□□□ -1.82
USP40-202ENST00000409945 FAM229BQ4G0N7 80 aa3.69□□□□□ -1.82
USP40-202ENST00000409945 Q8NDZ9 215 aa3.69□□□□□ -1.82
USP40-202ENST00000409945 TRBV7-6A0A0J9YX20 115 aa3.68□□□□□ -1.82
USP40-202ENST00000409945 LINC00575Q6W349 94 aa3.68□□□□□ -1.82
USP40-202ENST00000409945 KCNQ1DNQ9H478 68 aa3.68□□□□□ -1.82
USP40-202ENST00000409945 TRAV23DV6A0A075B6W5 121 aa3.68□□□□□ -1.82
USP40-202ENST00000409945 hADV29S1A0JD25 119 aa3.68□□□□□ -1.82
USP40-202ENST00000409945 TNXBP22105 4242 aa3.67□□□□□ -1.82
USP40-202ENST00000409945 TRBV10-3A0A0K0K1G6 114 aa3.67□□□□□ -1.82
USP40-202ENST00000409945 LCA10Q71F78 164 aa3.67□□□□□ -1.82
USP40-202ENST00000409945 LINC00643Q86TS7 51 aa3.67□□□□□ -1.82
USP40-202ENST00000409945 TRBV7-7A0A0K0K1E9 115 aa3.66□□□□□ -1.82
USP40-202ENST00000409945 KRTAP13-1Q8IUC0 172 aa3.66□□□□□ -1.82
USP40-202ENST00000409945 ELOF1P60002 83 aaKnown RBP3.66□□□□□ -1.82
USP40-202ENST00000409945 C14orf132Q9NPU4 83 aa3.66□□□□□ -1.82
USP40-202ENST00000409945 HMCN2Q8NDA2 5059 aa3.65□□□□□ -1.82
USP40-202ENST00000409945 COX7BP24311 80 aa3.65□□□□□ -1.83
USP40-202ENST00000409945 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.65□□□□□ -1.83
USP40-202ENST00000409945 CCKP06307 115 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 PDE6GP18545 87 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 SPRR1AP35321 89 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 SPAG11AQ6PDA7 123 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 LINC00304Q8N9R0 145 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 SMCR5Q8TEV8 140 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 Q6ZQY7 126 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 Q6ZRX8 168 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 SPRR4Q96PI1 79 aa3.64□□□□□ -1.83
USP40-202ENST00000409945 RBM3P98179 157 aaKnown RBP3.63□□□□□ -1.83
USP40-202ENST00000409945 LOC110117498A0A087WWA1 95 aa3.62□□□□□ -1.83
USP40-202ENST00000409945 ATP5EP2Q5VTU8 51 aa3.62□□□□□ -1.83
USP40-202ENST00000409945 DSCR8Q96T75 97 aa3.62□□□□□ -1.83
USP40-202ENST00000409945 TMEM258P61165 79 aa3.61□□□□□ -1.83
USP40-202ENST00000409945 Q6JHZ5 121 aa3.61□□□□□ -1.83
USP40-202ENST00000409945 LINC00846Q9NV44 126 aa3.61□□□□□ -1.83
USP40-202ENST00000409945 C9orf153Q5TBE3 101 aa3.6□□□□□ -1.83
USP40-202ENST00000409945 Q6ZQT0 140 aa3.6□□□□□ -1.83
USP40-202ENST00000409945 UBL5Q9BZL1 73 aa3.6□□□□□ -1.83
USP40-202ENST00000409945 KRTAP13-2Q52LG2 175 aa3.6□□□□□ -1.83
USP40-202ENST00000409945 SSBP3-AS1Q7Z2R9 100 aa3.6□□□□□ -1.83
USP40-202ENST00000409945 SPINK1P00995 79 aa3.59□□□□□ -1.83
USP40-202ENST00000409945 LINC00483Q53H64 154 aa3.59□□□□□ -1.83
USP40-202ENST00000409945 TRBV7-4A0A0J9YYF1 115 aa3.58□□□□□ -1.84
USP40-202ENST00000409945 Q9BRP9 147 aa3.58□□□□□ -1.84
USP40-202ENST00000409945 MOBPQ13875 183 aa3.58□□□□□ -1.84
USP40-202ENST00000409945 LINC01554Q52M75 96 aa3.58□□□□□ -1.84
USP40-202ENST00000409945 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
USP40-202ENST00000409945 UQCRQO14949 82 aa3.57□□□□□ -1.84
USP40-202ENST00000409945 ATOX1O00244 68 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 ERC2-IT1O76042 136 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 HIST1H4AP62805 103 aaKnown RBP3.56□□□□□ -1.84
USP40-202ENST00000409945 FP248Q71RG6 208 aaPredicted RBP3.56□□□□□ -1.84
USP40-202ENST00000409945 CAMK2N1Q7Z7J9 78 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 IGKV3D-7A0A0C4DH55 119 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 A0A1B0GW54 56 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 RPS29P62273 56 aaKnown RBP3.56□□□□□ -1.84
USP40-202ENST00000409945 LIMD2Q9BT23 127 aa3.56□□□□□ -1.84
USP40-202ENST00000409945 LRP2P98164 4655 aa3.55□□□□□ -1.84
USP40-202ENST00000409945 IGLV5-48A0A075B6I7 105 aa3.55□□□□□ -1.84
USP40-202ENST00000409945 F8WEM9 126 aa3.55□□□□□ -1.84
USP40-202ENST00000409945 DEFB105AQ8NG35 78 aa3.55□□□□□ -1.84
USP40-202ENST00000409945 ST20-AS1Q8NBB2 130 aa3.54□□□□□ -1.84
USP40-202ENST00000409945 RETNLBQ9BQ08 111 aa3.54□□□□□ -1.84
USP40-202ENST00000409945 SPRR1BP22528 89 aa3.54□□□□□ -1.84
USP40-202ENST00000409945 TPRXLQ17RH7 258 aa3.53□□□□□ -1.84
USP40-202ENST00000409945 Q8N9L7 120 aa3.52□□□□□ -1.85
USP40-202ENST00000409945 SERP1Q9Y6X1 66 aa3.52□□□□□ -1.85
USP40-202ENST00000409945 A0A087WVE0 104 aa3.52□□□□□ -1.85
USP40-202ENST00000409945 COX7CP15954 63 aa3.52□□□□□ -1.85
USP40-202ENST00000409945 ADM2Q7Z4H4 148 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms