RNA–Protein interactions for RNA: ENST00000401921.5

HDAC9-201, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-201ENST00000401921 LINC01554Q52M75 96 aa4.67□□□□□ -1.66
HDAC9-201ENST00000401921 CMYA5Q8N3K9 4069 aa4.67□□□□□ -1.66
HDAC9-201ENST00000401921 PRR26Q8N8Z3 221 aa4.67□□□□□ -1.66
HDAC9-201ENST00000401921 SPAG11AQ6PDA7 123 aa4.66□□□□□ -1.66
HDAC9-201ENST00000401921 COA5Q86WW8 74 aa4.66□□□□□ -1.66
HDAC9-201ENST00000401921 LYSTQ99698 3801 aa4.66□□□□□ -1.66
HDAC9-201ENST00000401921 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
HDAC9-201ENST00000401921 SPANXA2-OT1Q8N9U9 137 aa4.65□□□□□ -1.66
HDAC9-201ENST00000401921 C8orf17Q9NRJ1 99 aa4.65□□□□□ -1.67
HDAC9-201ENST00000401921 KRTAP29-1A8MX34 341 aaPredicted RBP4.64□□□□□ -1.67
HDAC9-201ENST00000401921 MMP24-AS1A0A0U1RRL7 71 aa4.64□□□□□ -1.67
HDAC9-201ENST00000401921 RETNLBQ9BQ08 111 aa4.64□□□□□ -1.67
HDAC9-201ENST00000401921 A0A1B0GVX0 72 aa4.63□□□□□ -1.67
HDAC9-201ENST00000401921 KRTAP13-1Q8IUC0 172 aa4.63□□□□□ -1.67
HDAC9-201ENST00000401921 WWC2-AS2Q96NR7 200 aa4.63□□□□□ -1.67
HDAC9-201ENST00000401921 H3BPC8 53 aa4.62□□□□□ -1.67
HDAC9-201ENST00000401921 SPINK7P58062 85 aa4.62□□□□□ -1.67
HDAC9-201ENST00000401921 IGLV7-43P04211 117 aa4.62□□□□□ -1.67
HDAC9-201ENST00000401921 MRPL34Q9BQ48 92 aaKnown RBP4.61□□□□□ -1.67
HDAC9-201ENST00000401921 ADM2Q7Z4H4 148 aa4.61□□□□□ -1.67
HDAC9-201ENST00000401921 TP53AIP1Q9HCN2 124 aa4.61□□□□□ -1.67
HDAC9-201ENST00000401921 PLAC8Q9NZF1 115 aa4.61□□□□□ -1.67
HDAC9-201ENST00000401921 FBN3Q75N90 2809 aa4.61□□□□□ -1.67
HDAC9-201ENST00000401921 DNAH9Q9NYC9 4486 aa4.61□□□□□ -1.67
HDAC9-201ENST00000401921 Q6ZR54 194 aa4.6□□□□□ -1.67
HDAC9-201ENST00000401921 LINC01558Q9Y6Z2 57 aa4.6□□□□□ -1.67
HDAC9-201ENST00000401921 DNAH3Q8TD57 4116 aa4.59□□□□□ -1.68
HDAC9-201ENST00000401921 A0A087X002 238 aa4.59□□□□□ -1.68
HDAC9-201ENST00000401921 NOTCH2NLQ7Z3S9 236 aa4.59□□□□□ -1.68
HDAC9-201ENST00000401921 PLECQ15149 4684 aaKnown RBP4.58□□□□□ -1.68
HDAC9-201ENST00000401921 MEGF8Q7Z7M0 2845 aa4.58□□□□□ -1.68
HDAC9-201ENST00000401921 KRTAP10-2P60368 255 aa4.58□□□□□ -1.68
HDAC9-201ENST00000401921 LINC00483Q53H64 154 aa4.57□□□□□ -1.68
HDAC9-201ENST00000401921 Q96NJ1 140 aa4.57□□□□□ -1.68
HDAC9-201ENST00000401921 DNHD1Q96M86 4753 aa4.57□□□□□ -1.68
HDAC9-201ENST00000401921 IGLV7-46A0A075B6I9 117 aa4.55□□□□□ -1.68
HDAC9-201ENST00000401921 SSBP3-AS1Q7Z2R9 100 aa4.54□□□□□ -1.68
HDAC9-201ENST00000401921 DNAH7Q8WXX0 4024 aa4.54□□□□□ -1.68
HDAC9-201ENST00000401921 PLA2G1BP04054 148 aaKnown RBP4.54□□□□□ -1.68
HDAC9-201ENST00000401921 DNAH1Q9P2D7 4330 aa4.52□□□□□ -1.69
HDAC9-201ENST00000401921 KRTAP10-1P60331 282 aa4.51□□□□□ -1.69
HDAC9-201ENST00000401921 IGKV2D-30A0A075B6S6 120 aa4.51□□□□□ -1.69
HDAC9-201ENST00000401921 IGKV2-30P06310 120 aa4.51□□□□□ -1.69
HDAC9-201ENST00000401921 STARD9Q9P2P6 4700 aa4.51□□□□□ -1.69
HDAC9-201ENST00000401921 Q5W150 140 aa4.5□□□□□ -1.69
HDAC9-201ENST00000401921 TYMSOSQ8TAI1 123 aa4.5□□□□□ -1.69
HDAC9-201ENST00000401921 CSAG1Q6PB30 78 aa4.49□□□□□ -1.69
HDAC9-201ENST00000401921 SMR3BP02814 79 aaPredicted RBP4.49□□□□□ -1.69
HDAC9-201ENST00000401921 PRKDCP78527 4128 aaKnown RBP4.48□□□□□ -1.69
HDAC9-201ENST00000401921 HRES1P13985 223 aa4.47□□□□□ -1.69
HDAC9-201ENST00000401921 KMT2AQ03164 3969 aa4.47□□□□□ -1.69
HDAC9-201ENST00000401921 ACYP2P14621 99 aa4.47□□□□□ -1.69
HDAC9-201ENST00000401921 ASB16-AS1Q495Z4 193 aa4.47□□□□□ -1.69
HDAC9-201ENST00000401921 KRTAP13-2Q52LG2 175 aa4.45□□□□□ -1.7
HDAC9-201ENST00000401921 SPINK1P00995 79 aa4.44□□□□□ -1.7
HDAC9-201ENST00000401921 A0A1B0GU69 56 aa4.43□□□□□ -1.7
HDAC9-201ENST00000401921 FRAS1Q86XX4 4008 aa4.42□□□□□ -1.7
HDAC9-201ENST00000401921 VPS13DQ5THJ4 4388 aa4.42□□□□□ -1.7
HDAC9-201ENST00000401921 A0A0A0MQY5 61 aa4.41□□□□□ -1.7
HDAC9-201ENST00000401921 LORP23490 312 aaPredicted RBP4.41□□□□□ -1.7
HDAC9-201ENST00000401921 MIR22HGQ0VDD5 57 aa4.41□□□□□ -1.7
HDAC9-201ENST00000401921 LINC00304Q8N9R0 145 aa4.4□□□□□ -1.71
HDAC9-201ENST00000401921 C9orf92A6NGG3 77 aa4.4□□□□□ -1.71
HDAC9-201ENST00000401921 DNAH11Q96DT5 4516 aa4.38□□□□□ -1.71
HDAC9-201ENST00000401921 UQCR11O14957 56 aa4.38□□□□□ -1.71
HDAC9-201ENST00000401921 SPATA8Q6RVD6 105 aa4.38□□□□□ -1.71
HDAC9-201ENST00000401921 DNAH8Q96JB1 4490 aa4.38□□□□□ -1.71
HDAC9-201ENST00000401921 Q6ZSA8 131 aa4.37□□□□□ -1.71
HDAC9-201ENST00000401921 Q8N1X5 172 aa4.37□□□□□ -1.71
HDAC9-201ENST00000401921 DNAH17Q9UFH2 4485 aa4.36□□□□□ -1.71
HDAC9-201ENST00000401921 KRTAP1-4P0C5Y4 121 aa4.36□□□□□ -1.71
HDAC9-201ENST00000401921 HECTD4Q9Y4D8 3996 aa4.35□□□□□ -1.71
HDAC9-201ENST00000401921 DYNC2H1Q8NCM8 4307 aaKnown RBP4.35□□□□□ -1.71
HDAC9-201ENST00000401921 DMBT1Q9UGM3 2413 aaPredicted RBP4.35□□□□□ -1.71
HDAC9-201ENST00000401921 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
HDAC9-201ENST00000401921 ROMO1P60602 79 aa4.34□□□□□ -1.71
HDAC9-201ENST00000401921 DMAC1Q96GE9 116 aa4.33□□□□□ -1.72
HDAC9-201ENST00000401921 DNAH6Q9C0G6 4158 aa4.33□□□□□ -1.72
HDAC9-201ENST00000401921 KRTAP13-3Q3SY46 172 aa4.32□□□□□ -1.72
HDAC9-201ENST00000401921 FLG2Q5D862 2391 aaPredicted RBP4.3□□□□□ -1.72
HDAC9-201ENST00000401921 LRP1BQ9NZR2 4599 aa4.29□□□□□ -1.72
HDAC9-201ENST00000401921 KRTAP16-1A8MUX0 517 aa4.29□□□□□ -1.72
HDAC9-201ENST00000401921 KRTAP25-1Q3LHN0 102 aa4.27□□□□□ -1.73
HDAC9-201ENST00000401921 DNAH5Q8TE73 4624 aa4.26□□□□□ -1.73
HDAC9-201ENST00000401921 HYDINQ4G0P3 5121 aa4.25□□□□□ -1.73
HDAC9-201ENST00000401921 VPS13BQ7Z7G8 4022 aa4.22□□□□□ -1.73
HDAC9-201ENST00000401921 A8MUU9 505 aa4.2□□□□□ -1.74
HDAC9-201ENST00000401921 CRIPTQ9P021 101 aa4.2□□□□□ -1.74
HDAC9-201ENST00000401921 ALMS1Q8TCU4 4167 aa4.2□□□□□ -1.74
HDAC9-201ENST00000401921 P0C880 135 aa4.2□□□□□ -1.74
HDAC9-201ENST00000401921 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
HDAC9-201ENST00000401921 RPS29P62273 56 aaKnown RBP4.18□□□□□ -1.74
HDAC9-201ENST00000401921 FAT1Q14517 4588 aa4.18□□□□□ -1.74
HDAC9-201ENST00000401921 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
HDAC9-201ENST00000401921 Q5VSD8 79 aa4.14□□□□□ -1.75
HDAC9-201ENST00000401921 C20orf166-AS1Q96NR2 134 aa4.14□□□□□ -1.75
HDAC9-201ENST00000401921 A0A1B0GVY2 172 aa4.13□□□□□ -1.75
HDAC9-201ENST00000401921 NDUFAF8A1L188 74 aa4.13□□□□□ -1.75
HDAC9-201ENST00000401921 DYNC1H1Q14204 4646 aaKnown RBP4.13□□□□□ -1.75
HDAC9-201ENST00000401921 A0A1B0GU33 70 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms