RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 KRTAP1-3Q8IUG1 177 aa5.51□□□□□ -1.53
SYNE1-209ENST00000367257 A0A087X002 238 aa5.5□□□□□ -1.53
SYNE1-209ENST00000367257 KRTAP25-1Q3LHN0 102 aa5.5□□□□□ -1.53
SYNE1-209ENST00000367257 CASC10Q5T4H9 136 aa5.5□□□□□ -1.53
SYNE1-209ENST00000367257 SPATA8Q6RVD6 105 aa5.49□□□□□ -1.53
SYNE1-209ENST00000367257 KRTAP1-1Q07627 177 aa5.49□□□□□ -1.53
SYNE1-209ENST00000367257 ADM2Q7Z4H4 148 aa5.49□□□□□ -1.53
SYNE1-209ENST00000367257 FLNAP21333 2647 aaKnown RBP5.49□□□□□ -1.53
SYNE1-209ENST00000367257 A8MU10 97 aa5.48□□□□□ -1.53
SYNE1-209ENST00000367257 CAMK2N1Q7Z7J9 78 aa5.48□□□□□ -1.53
SYNE1-209ENST00000367257 ITPR3Q14573 2671 aa5.48□□□□□ -1.53
SYNE1-209ENST00000367257 ROMO1P60602 79 aa5.47□□□□□ -1.53
SYNE1-209ENST00000367257 ANAPC11Q9NYG5 84 aa5.47□□□□□ -1.53
SYNE1-209ENST00000367257 SEC61BP60468 96 aaKnown RBP5.47□□□□□ -1.53
SYNE1-209ENST00000367257 S4R3F8 94 aa5.47□□□□□ -1.53
SYNE1-209ENST00000367257 Q5W150 140 aa5.46□□□□□ -1.53
SYNE1-209ENST00000367257 NDUFAF8A1L188 74 aa5.45□□□□□ -1.54
SYNE1-209ENST00000367257 CR1P17927 2039 aa5.45□□□□□ -1.54
SYNE1-209ENST00000367257 STAB2Q8WWQ8 2551 aa5.44□□□□□ -1.54
SYNE1-209ENST00000367257 Q6ZR54 194 aa5.44□□□□□ -1.54
SYNE1-209ENST00000367257 TRRAPQ9Y4A5 3859 aa5.44□□□□□ -1.54
SYNE1-209ENST00000367257 SETXQ7Z333 2677 aaKnown RBP5.42□□□□□ -1.54
SYNE1-209ENST00000367257 ITPR2Q14571 2701 aa5.42□□□□□ -1.54
SYNE1-209ENST00000367257 RPL37P61927 97 aaKnown RBP5.42□□□□□ -1.54
SYNE1-209ENST00000367257 LCE6AA0A183 80 aa5.41□□□□□ -1.54
SYNE1-209ENST00000367257 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-209ENST00000367257 SMR3BP02814 79 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-209ENST00000367257 KRTAP26-1Q6PEX3 210 aa5.37□□□□□ -1.55
SYNE1-209ENST00000367257 TEP1Q99973 2627 aaKnown RBP5.37□□□□□ -1.55
SYNE1-209ENST00000367257 RPS29P62273 56 aaKnown RBP5.37□□□□□ -1.55
SYNE1-209ENST00000367257 H1FX-AS1Q4G0G2 97 aa5.36□□□□□ -1.55
SYNE1-209ENST00000367257 Q8NDZ9 215 aa5.36□□□□□ -1.55
SYNE1-209ENST00000367257 KRTAP29-1A8MX34 341 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-209ENST00000367257 COL6A5A8TX70 2615 aa5.34□□□□□ -1.55
SYNE1-209ENST00000367257 R4GN34 69 aa5.34□□□□□ -1.55
SYNE1-209ENST00000367257 DYNC2H1Q8NCM8 4307 aaKnown RBP5.34□□□□□ -1.55
SYNE1-209ENST00000367257 NIPBLQ6KC79 2804 aaeCLIP5.34□□□□□ -1.55
SYNE1-209ENST00000367257 TEX15Q9BXT5 2789 aa5.33□□□□□ -1.56
SYNE1-209ENST00000367257 DNAH7Q8WXX0 4024 aa5.33□□□□□ -1.56
SYNE1-209ENST00000367257 NF1P21359 2839 aa5.33□□□□□ -1.56
SYNE1-209ENST00000367257 MAP1AP78559 2803 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-209ENST00000367257 UNC79Q9P2D8 2635 aa5.32□□□□□ -1.56
SYNE1-209ENST00000367257 KRTAP4-16G5E9R7 235 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-209ENST00000367257 DNAH1Q9P2D7 4330 aa5.29□□□□□ -1.56
SYNE1-209ENST00000367257 FBN1P35555 2871 aaKnown RBP5.29□□□□□ -1.56
SYNE1-209ENST00000367257 CSMD3Q7Z407 3707 aa5.29□□□□□ -1.56
SYNE1-209ENST00000367257 DNHD1Q96M86 4753 aa5.29□□□□□ -1.56
SYNE1-209ENST00000367257 M0R2T5 61 aa5.29□□□□□ -1.56
SYNE1-209ENST00000367257 C20orf166-AS1Q96NR2 134 aa5.28□□□□□ -1.56
SYNE1-209ENST00000367257 NOTCH1P46531 2555 aa5.27□□□□□ -1.57
SYNE1-209ENST00000367257 PRKDCP78527 4128 aaKnown RBP5.27□□□□□ -1.57
SYNE1-209ENST00000367257 A8MUU9 505 aa5.26□□□□□ -1.57
SYNE1-209ENST00000367257 LYSTQ99698 3801 aa5.26□□□□□ -1.57
SYNE1-209ENST00000367257 VWFP04275 2813 aa5.24□□□□□ -1.57
SYNE1-209ENST00000367257 TENM1Q9UKZ4 2725 aa5.24□□□□□ -1.57
SYNE1-209ENST00000367257 NSD1Q96L73 2696 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-209ENST00000367257 PANO1I0J062 215 aa5.21□□□□□ -1.57
SYNE1-209ENST00000367257 M0QZ58 72 aa5.21□□□□□ -1.57
SYNE1-209ENST00000367257 HIVEP1P15822 2718 aa5.2□□□□□ -1.58
SYNE1-209ENST00000367257 NBEAL1Q6ZS30 2694 aa5.19□□□□□ -1.58
SYNE1-209ENST00000367257 COL7A1Q02388 2944 aa5.19□□□□□ -1.58
SYNE1-209ENST00000367257 PKD1L1Q8TDX9 2849 aa5.18□□□□□ -1.58
SYNE1-209ENST00000367257 PLAC4Q8WY50 150 aa5.18□□□□□ -1.58
SYNE1-209ENST00000367257 KRTAP1-5Q9BYS1 174 aa5.17□□□□□ -1.58
SYNE1-209ENST00000367257 NOTCH2NLQ7Z3S9 236 aa5.17□□□□□ -1.58
SYNE1-209ENST00000367257 KRTAP11-1Q8IUC1 163 aa5.16□□□□□ -1.58
SYNE1-209ENST00000367257 Q5VSD8 79 aa5.15□□□□□ -1.58
SYNE1-209ENST00000367257 DNAH9Q9NYC9 4486 aa5.15□□□□□ -1.59
SYNE1-209ENST00000367257 KRTAP10-1P60331 282 aa5.13□□□□□ -1.59
SYNE1-209ENST00000367257 FRAS1Q86XX4 4008 aa5.12□□□□□ -1.59
SYNE1-209ENST00000367257 HUWE1Q7Z6Z7 4374 aaKnown RBP5.12□□□□□ -1.59
SYNE1-209ENST00000367257 KRTAP21-3Q3LHN1 58 aa5.09□□□□□ -1.59
SYNE1-209ENST00000367257 KRTAP13-1Q8IUC0 172 aa5.07□□□□□ -1.6
SYNE1-209ENST00000367257 DNAH6Q9C0G6 4158 aa5.06□□□□□ -1.6
SYNE1-209ENST00000367257 PP632Q6XCG6 107 aa5.05□□□□□ -1.6
SYNE1-209ENST00000367257 KRTAP10-2P60368 255 aa5.05□□□□□ -1.6
SYNE1-209ENST00000367257 Q6ZRN7 208 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-209ENST00000367257 STARD9Q9P2P6 4700 aa5□□□□□ -1.61
SYNE1-209ENST00000367257 MEGF8Q7Z7M0 2845 aa5□□□□□ -1.61
SYNE1-209ENST00000367257 FBN3Q75N90 2809 aa4.98□□□□□ -1.61
SYNE1-209ENST00000367257 DNAH2Q9P225 4427 aa4.98□□□□□ -1.61
SYNE1-209ENST00000367257 TNP1P09430 55 aa4.97□□□□□ -1.61
SYNE1-209ENST00000367257 VPS13DQ5THJ4 4388 aa4.96□□□□□ -1.62
SYNE1-209ENST00000367257 PKD1P98161 4303 aa4.95□□□□□ -1.62
SYNE1-209ENST00000367257 PLECQ15149 4684 aaKnown RBP4.95□□□□□ -1.62
SYNE1-209ENST00000367257 KRTAP7-1Q8IUC3 87 aa4.94□□□□□ -1.62
SYNE1-209ENST00000367257 KRTAP13-2Q52LG2 175 aa4.93□□□□□ -1.62
SYNE1-209ENST00000367257 HECTD4Q9Y4D8 3996 aa4.93□□□□□ -1.62
SYNE1-209ENST00000367257 P0C880 135 aa4.92□□□□□ -1.62
SYNE1-209ENST00000367257 FAT2Q9NYQ8 4349 aa4.92□□□□□ -1.62
SYNE1-209ENST00000367257 C10orf95Q9H7T3 257 aa4.92□□□□□ -1.62
SYNE1-209ENST00000367257 KMT2AQ03164 3969 aa4.91□□□□□ -1.62
SYNE1-209ENST00000367257 DNAH10Q8IVF4 4471 aa4.9□□□□□ -1.62
SYNE1-209ENST00000367257 HYDINQ4G0P3 5121 aa4.9□□□□□ -1.63
SYNE1-209ENST00000367257 H0YAA0 97 aa4.89□□□□□ -1.63
SYNE1-209ENST00000367257 DNAH11Q96DT5 4516 aa4.87□□□□□ -1.63
SYNE1-209ENST00000367257 SACSQ9NZJ4 4579 aa4.83□□□□□ -1.64
SYNE1-209ENST00000367257 NBEAL2Q6ZNJ1 2754 aa4.81□□□□□ -1.64
SYNE1-209ENST00000367257 DNAH17Q9UFH2 4485 aa4.81□□□□□ -1.64
SYNE1-209ENST00000367257 KMT2CQ8NEZ4 4911 aaKnown RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms