RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 LCA10Q71F78 164 aa8.8□□□□□ -1
PTPN9-201ENST00000306726 MRPL34Q9BQ48 92 aaKnown RBP8.8□□□□□ -1
PTPN9-201ENST00000306726 DNAH7Q8WXX0 4024 aa8.79□□□□□ -1
PTPN9-201ENST00000306726 PRAC1Q96KF2 57 aa8.79□□□□□ -1
PTPN9-201ENST00000306726 LOC101927531A0A1B0GV80 90 aa8.78□□□□□ -1
PTPN9-201ENST00000306726 A0A1B0GVX0 72 aa8.78□□□□□ -1
PTPN9-201ENST00000306726 ALMS1Q8TCU4 4167 aa8.76□□□□□ -1.01
PTPN9-201ENST00000306726 HRES1P13985 223 aa8.75□□□□□ -1.01
PTPN9-201ENST00000306726 Q6ZRN7 208 aaPredicted RBP8.74□□□□□ -1.01
PTPN9-201ENST00000306726 Q5W150 140 aa8.73□□□□□ -1.01
PTPN9-201ENST00000306726 A0A087WTM6 91 aa8.72□□□□□ -1.01
PTPN9-201ENST00000306726 IGLV7-46A0A075B6I9 117 aa8.71□□□□□ -1.02
PTPN9-201ENST00000306726 TP53AIP1Q9HCN2 124 aa8.69□□□□□ -1.02
PTPN9-201ENST00000306726 ZNF706Q9Y5V0 76 aaPredicted RBP8.69□□□□□ -1.02
PTPN9-201ENST00000306726 SPANXA2-OT1Q8N9U9 137 aa8.68□□□□□ -1.02
PTPN9-201ENST00000306726 H3BPC8 53 aa8.68□□□□□ -1.02
PTPN9-201ENST00000306726 RBM12B-AS1Q9P1G2 102 aa8.68□□□□□ -1.02
PTPN9-201ENST00000306726 DNAH6Q9C0G6 4158 aa8.67□□□□□ -1.02
PTPN9-201ENST00000306726 A0A1B0GU69 56 aa8.67□□□□□ -1.02
PTPN9-201ENST00000306726 ZNF861PO60384 105 aa8.67□□□□□ -1.02
PTPN9-201ENST00000306726 C4orf48Q5BLP8 95 aa8.65□□□□□ -1.02
PTPN9-201ENST00000306726 ADM2Q7Z4H4 148 aa8.65□□□□□ -1.03
PTPN9-201ENST00000306726 VPS13DQ5THJ4 4388 aa8.65□□□□□ -1.03
PTPN9-201ENST00000306726 KTN1-AS1Q86SY8 53 aa8.64□□□□□ -1.03
PTPN9-201ENST00000306726 LINC00313P59037 77 aa8.64□□□□□ -1.03
PTPN9-201ENST00000306726 Q8N1X5 172 aa8.64□□□□□ -1.03
PTPN9-201ENST00000306726 STARD9Q9P2P6 4700 aa8.63□□□□□ -1.03
PTPN9-201ENST00000306726 ATP11AUNQ6ZP68 121 aa8.63□□□□□ -1.03
PTPN9-201ENST00000306726 PLECQ15149 4684 aaKnown RBP8.62□□□□□ -1.03
PTPN9-201ENST00000306726 C7orf65Q6ZTY9 151 aa8.61□□□□□ -1.03
PTPN9-201ENST00000306726 Q96NJ1 140 aa8.61□□□□□ -1.03
PTPN9-201ENST00000306726 DNAH1Q9P2D7 4330 aa8.61□□□□□ -1.03
PTPN9-201ENST00000306726 ACYP2P14621 99 aa8.61□□□□□ -1.03
PTPN9-201ENST00000306726 SPRR1BP22528 89 aa8.6□□□□□ -1.03
PTPN9-201ENST00000306726 Q75L30 129 aa8.59□□□□□ -1.03
PTPN9-201ENST00000306726 CDC42SE1Q9NRR8 79 aa8.59□□□□□ -1.03
PTPN9-201ENST00000306726 SMR3BP02814 79 aaPredicted RBP8.56□□□□□ -1.04
PTPN9-201ENST00000306726 IGLV7-43P04211 117 aa8.55□□□□□ -1.04
PTPN9-201ENST00000306726 C9orf92A6NGG3 77 aa8.54□□□□□ -1.04
PTPN9-201ENST00000306726 LINC01558Q9Y6Z2 57 aa8.52□□□□□ -1.05
PTPN9-201ENST00000306726 KRTAP10-2P60368 255 aa8.51□□□□□ -1.05
PTPN9-201ENST00000306726 CRIPTQ9P021 101 aa8.5□□□□□ -1.05
PTPN9-201ENST00000306726 KRTAP13-1Q8IUC0 172 aa8.49□□□□□ -1.05
PTPN9-201ENST00000306726 PLA2G1BP04054 148 aaKnown RBP8.49□□□□□ -1.05
PTPN9-201ENST00000306726 MIR22HGQ0VDD5 57 aa8.45□□□□□ -1.06
PTPN9-201ENST00000306726 A0A1B0GVY2 172 aa8.44□□□□□ -1.06
PTPN9-201ENST00000306726 A6NN06 94 aa8.43□□□□□ -1.06
PTPN9-201ENST00000306726 FAM229AH3BQW9 127 aa8.43□□□□□ -1.06
PTPN9-201ENST00000306726 TYMSOSQ8TAI1 123 aa8.42□□□□□ -1.06
PTPN9-201ENST00000306726 PLAC8Q9NZF1 115 aa8.41□□□□□ -1.06
PTPN9-201ENST00000306726 Q6ZSA8 131 aa8.39□□□□□ -1.07
PTPN9-201ENST00000306726 UQCR11O14957 56 aa8.38□□□□□ -1.07
PTPN9-201ENST00000306726 DNAH17Q9UFH2 4485 aa8.38□□□□□ -1.07
PTPN9-201ENST00000306726 FRAS1Q86XX4 4008 aa8.38□□□□□ -1.07
PTPN9-201ENST00000306726 LINC00483Q53H64 154 aa8.36□□□□□ -1.07
PTPN9-201ENST00000306726 C8orf87E5RJ46 101 aa8.36□□□□□ -1.07
PTPN9-201ENST00000306726 SACSQ9NZJ4 4579 aa8.36□□□□□ -1.07
PTPN9-201ENST00000306726 DNAH2Q9P225 4427 aa8.35□□□□□ -1.07
PTPN9-201ENST00000306726 KRTAP10-1P60331 282 aa8.34□□□□□ -1.07
PTPN9-201ENST00000306726 CSAG1Q6PB30 78 aa8.34□□□□□ -1.07
PTPN9-201ENST00000306726 SSBP3-AS1Q7Z2R9 100 aa8.34□□□□□ -1.07
PTPN9-201ENST00000306726 KRTAP13-2Q52LG2 175 aa8.32□□□□□ -1.08
PTPN9-201ENST00000306726 RYR2Q92736 4967 aa8.31□□□□□ -1.08
PTPN9-201ENST00000306726 KMT2AQ03164 3969 aa8.29□□□□□ -1.08
PTPN9-201ENST00000306726 DMAC1Q96GE9 116 aa8.26□□□□□ -1.09
PTPN9-201ENST00000306726 ASB16-AS1Q495Z4 193 aa8.24□□□□□ -1.09
PTPN9-201ENST00000306726 A0A0D9SG42 100 aa8.24□□□□□ -1.09
PTPN9-201ENST00000306726 HYDINQ4G0P3 5121 aa8.22□□□□□ -1.09
PTPN9-201ENST00000306726 SPATA8Q6RVD6 105 aa8.21□□□□□ -1.09
PTPN9-201ENST00000306726 DNAH8Q96JB1 4490 aa8.2□□□□□ -1.1
PTPN9-201ENST00000306726 LINC01554Q52M75 96 aa8.19□□□□□ -1.1
PTPN9-201ENST00000306726 DNAH11Q96DT5 4516 aa8.19□□□□□ -1.1
PTPN9-201ENST00000306726 LINC00304Q8N9R0 145 aa8.19□□□□□ -1.1
PTPN9-201ENST00000306726 FAT2Q9NYQ8 4349 aa8.19□□□□□ -1.1
PTPN9-201ENST00000306726 H3BS24 57 aa8.16□□□□□ -1.1
PTPN9-201ENST00000306726 KMT2CQ8NEZ4 4911 aaKnown RBP8.14□□□□□ -1.11
PTPN9-201ENST00000306726 PKD1P98161 4303 aa8.12□□□□□ -1.11
PTPN9-201ENST00000306726 HECTD4Q9Y4D8 3996 aa8.11□□□□□ -1.11
PTPN9-201ENST00000306726 KRTAP13-3Q3SY46 172 aa8.1□□□□□ -1.11
PTPN9-201ENST00000306726 DYNC1H1Q14204 4646 aaKnown RBP8.07□□□□□ -1.12
PTPN9-201ENST00000306726 DNAH5Q8TE73 4624 aa8.07□□□□□ -1.12
PTPN9-201ENST00000306726 A0A1B0GU33 70 aa8.06□□□□□ -1.12
PTPN9-201ENST00000306726 K7ERS5 55 aa8.05□□□□□ -1.12
PTPN9-201ENST00000306726 Q5VSD8 79 aa8.02□□□□□ -1.13
PTPN9-201ENST00000306726 RYR3Q15413 4870 aa8.01□□□□□ -1.13
PTPN9-201ENST00000306726 KRTAP1-4P0C5Y4 121 aa8.01□□□□□ -1.13
PTPN9-201ENST00000306726 LRP1BQ9NZR2 4599 aa8.01□□□□□ -1.13
PTPN9-201ENST00000306726 KRTAP16-1A8MUX0 517 aa8□□□□□ -1.13
PTPN9-201ENST00000306726 KRTAP10-4P60372 401 aaPredicted RBP7.96□□□□□ -1.14
PTPN9-201ENST00000306726 H0YAA0 97 aa7.92□□□□□ -1.14
PTPN9-201ENST00000306726 SPINT4Q6UDR6 99 aa7.92□□□□□ -1.14
PTPN9-201ENST00000306726 FAT1Q14517 4588 aa7.9□□□□□ -1.14
PTPN9-201ENST00000306726 APOBP04114 4563 aaKnown RBP7.9□□□□□ -1.14
PTPN9-201ENST00000306726 PKHD1P08F94 4074 aa7.87□□□□□ -1.15
PTPN9-201ENST00000306726 MYCBP2O75592 4640 aa7.86□□□□□ -1.15
PTPN9-201ENST00000306726 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
PTPN9-201ENST00000306726 RYR1P21817 5038 aa7.82□□□□□ -1.16
PTPN9-201ENST00000306726 RPS29P62273 56 aaKnown RBP7.8□□□□□ -1.16
PTPN9-201ENST00000306726 C10orf95Q9H7T3 257 aa7.8□□□□□ -1.16
PTPN9-201ENST00000306726 COX6B2Q6YFQ2 88 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms