RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 DYNC1H1Q14204 4646 aaKnown RBP11.32□□□□□ -0.6
HOXC4-201ENST00000303406 H3BPC8 53 aa11.31□□□□□ -0.6
HOXC4-201ENST00000303406 MP68P56378 58 aa11.3□□□□□ -0.6
HOXC4-201ENST00000303406 TP53AIP1Q9HCN2 124 aa11.28□□□□□ -0.6
HOXC4-201ENST00000303406 IGHV6-1A0A0B4J1U7 121 aa11.27□□□□□ -0.61
HOXC4-201ENST00000303406 RYR2Q92736 4967 aa11.27□□□□□ -0.61
HOXC4-201ENST00000303406 VPS13BQ7Z7G8 4022 aa11.26□□□□□ -0.61
HOXC4-201ENST00000303406 PLA2G1BP04054 148 aaKnown RBP11.25□□□□□ -0.61
HOXC4-201ENST00000303406 LIMD2Q9BT23 127 aa11.25□□□□□ -0.61
HOXC4-201ENST00000303406 C8orf87E5RJ46 101 aa11.25□□□□□ -0.61
HOXC4-201ENST00000303406 MRPL34Q9BQ48 92 aaKnown RBP11.23□□□□□ -0.61
HOXC4-201ENST00000303406 H0Y9P7 68 aa11.22□□□□□ -0.61
HOXC4-201ENST00000303406 TYMSOSQ8TAI1 123 aa11.21□□□□□ -0.61
HOXC4-201ENST00000303406 SERP1Q9Y6X1 66 aa11.21□□□□□ -0.61
HOXC4-201ENST00000303406 PKHD1P08F94 4074 aa11.2□□□□□ -0.62
HOXC4-201ENST00000303406 TRAV22A0A0B4J277 110 aa11.19□□□□□ -0.62
HOXC4-201ENST00000303406 LOC100996750A0A140TA64 210 aa11.19□□□□□ -0.62
HOXC4-201ENST00000303406 C1orf195Q5TG92 126 aa11.19□□□□□ -0.62
HOXC4-201ENST00000303406 KRTAP4-6Q9BYQ5 205 aa11.19□□□□□ -0.62
HOXC4-201ENST00000303406 APOBP04114 4563 aaKnown RBP11.18□□□□□ -0.62
HOXC4-201ENST00000303406 SPINK1P00995 79 aa11.17□□□□□ -0.62
HOXC4-201ENST00000303406 KRTAP10-4P60372 401 aaPredicted RBP11.17□□□□□ -0.62
HOXC4-201ENST00000303406 RPS29P62273 56 aaKnown RBP11.17□□□□□ -0.62
HOXC4-201ENST00000303406 LINC00208Q96KT6 92 aa11.16□□□□□ -0.62
HOXC4-201ENST00000303406 NOTCH2NLQ7Z3S9 236 aa11.15□□□□□ -0.62
HOXC4-201ENST00000303406 SMR3BP02814 79 aaPredicted RBP11.14□□□□□ -0.63
HOXC4-201ENST00000303406 LCE2AQ5TA79 106 aaPredicted RBP11.14□□□□□ -0.63
HOXC4-201ENST00000303406 SPAG11AQ6PDA7 123 aa11.14□□□□□ -0.63
HOXC4-201ENST00000303406 OXTP01178 125 aa11.11□□□□□ -0.63
HOXC4-201ENST00000303406 C1orf64Q8NEQ6 169 aa11.11□□□□□ -0.63
HOXC4-201ENST00000303406 NDUFS5O43920 106 aa11.09□□□□□ -0.63
HOXC4-201ENST00000303406 LINC00304Q8N9R0 145 aa11.09□□□□□ -0.63
HOXC4-201ENST00000303406 LINC00313P59037 77 aa11.08□□□□□ -0.64
HOXC4-201ENST00000303406 PRR26Q8N8Z3 221 aa11.08□□□□□ -0.64
HOXC4-201ENST00000303406 SPANXA2-OT1Q8N9U9 137 aa11.07□□□□□ -0.64
HOXC4-201ENST00000303406 CYP4F30PQ9H0H9 118 aa11.07□□□□□ -0.64
HOXC4-201ENST00000303406 KMT2CQ8NEZ4 4911 aaKnown RBP11.04□□□□□ -0.64
HOXC4-201ENST00000303406 Q8N9P0 234 aaPredicted RBP11.02□□□□□ -0.65
HOXC4-201ENST00000303406 KRTAP13-3Q3SY46 172 aa10.99□□□□□ -0.65
HOXC4-201ENST00000303406 PKHD1L1Q86WI1 4243 aa10.99□□□□□ -0.65
HOXC4-201ENST00000303406 KRTAP16-1A8MUX0 517 aa10.98□□□□□ -0.65
HOXC4-201ENST00000303406 SMIM26A0A096LP01 95 aa10.97□□□□□ -0.65
HOXC4-201ENST00000303406 LOC101927531A0A1B0GV80 90 aa10.97□□□□□ -0.65
HOXC4-201ENST00000303406 FAT1Q14517 4588 aa10.97□□□□□ -0.65
HOXC4-201ENST00000303406 FAM229AH3BQW9 127 aa10.96□□□□□ -0.65
HOXC4-201ENST00000303406 IGLV7-46A0A075B6I9 117 aa10.92□□□□□ -0.66
HOXC4-201ENST00000303406 Q5W150 140 aa10.92□□□□□ -0.66
HOXC4-201ENST00000303406 PRR4Q16378 134 aa10.85□□□□□ -0.67
HOXC4-201ENST00000303406 PCOTHQ58A44 107 aa10.84□□□□□ -0.67
HOXC4-201ENST00000303406 Q5VSD8 79 aa10.83□□□□□ -0.68
HOXC4-201ENST00000303406 FP248Q71RG6 208 aaPredicted RBP10.83□□□□□ -0.68
HOXC4-201ENST00000303406 RYR3Q15413 4870 aa10.78□□□□□ -0.68
HOXC4-201ENST00000303406 IGKV2-30P06310 120 aa10.78□□□□□ -0.68
HOXC4-201ENST00000303406 KRTAP10-8P60410 259 aa10.77□□□□□ -0.69
HOXC4-201ENST00000303406 HSPG2P98160 4391 aa10.76□□□□□ -0.69
HOXC4-201ENST00000303406 RYR1P21817 5038 aa10.73□□□□□ -0.69
HOXC4-201ENST00000303406 SVIPQ8NHG7 77 aa10.73□□□□□ -0.69
HOXC4-201ENST00000303406 C4orf26Q17RF5 130 aa10.71□□□□□ -0.69
HOXC4-201ENST00000303406 COA5Q86WW8 74 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 C20orf166-AS1Q96NR2 134 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 RETNLBQ9BQ08 111 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 A8MUU9 505 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 Q1T7F1 81 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 Q8N1X5 172 aa10.68□□□□□ -0.7
HOXC4-201ENST00000303406 HRES1P13985 223 aa10.66□□□□□ -0.7
HOXC4-201ENST00000303406 V9GYY9 64 aa10.63□□□□□ -0.71
HOXC4-201ENST00000303406 TNXBP22105 4242 aa10.63□□□□□ -0.71
HOXC4-201ENST00000303406 MPLKIPQ8TAP9 179 aa10.63□□□□□ -0.71
HOXC4-201ENST00000303406 DMAC1Q96GE9 116 aa10.61□□□□□ -0.71
HOXC4-201ENST00000303406 FLG2Q5D862 2391 aaPredicted RBP10.6□□□□□ -0.71
HOXC4-201ENST00000303406 C9orf92A6NGG3 77 aa10.59□□□□□ -0.71
HOXC4-201ENST00000303406 IGKV2D-30A0A075B6S6 120 aa10.58□□□□□ -0.72
HOXC4-201ENST00000303406 ACYP2P14621 99 aa10.58□□□□□ -0.72
HOXC4-201ENST00000303406 C7orf65Q6ZTY9 151 aa10.58□□□□□ -0.72
HOXC4-201ENST00000303406 KRTAP17-1Q9BYP8 105 aa10.58□□□□□ -0.72
HOXC4-201ENST00000303406 FAT3Q8TDW7 4589 aa10.58□□□□□ -0.72
HOXC4-201ENST00000303406 LCE2CQ5TA81 110 aa10.55□□□□□ -0.72
HOXC4-201ENST00000303406 Q75L30 129 aa10.53□□□□□ -0.72
HOXC4-201ENST00000303406 LRP1Q07954 4544 aaKnown RBP10.51□□□□□ -0.73
HOXC4-201ENST00000303406 MT1HL1P0DM35 61 aa10.48□□□□□ -0.73
HOXC4-201ENST00000303406 KIAA1109Q2LD37 5005 aa10.45□□□□□ -0.74
HOXC4-201ENST00000303406 A8MUN3 132 aa10.43□□□□□ -0.74
HOXC4-201ENST00000303406 LINC01558Q9Y6Z2 57 aa10.42□□□□□ -0.74
HOXC4-201ENST00000303406 H3BS24 57 aa10.41□□□□□ -0.74
HOXC4-201ENST00000303406 LORP23490 312 aaPredicted RBP10.41□□□□□ -0.74
HOXC4-201ENST00000303406 CHKB-CPT1BH3BT56 60 aa10.39□□□□□ -0.75
HOXC4-201ENST00000303406 EPPK1P58107 5090 aaKnown RBP10.37□□□□□ -0.75
HOXC4-201ENST00000303406 PSPHP1O15172 72 aa10.37□□□□□ -0.75
HOXC4-201ENST00000303406 RPL37P61927 97 aaKnown RBP10.34□□□□□ -0.75
HOXC4-201ENST00000303406 Q5VV11 94 aa10.34□□□□□ -0.75
HOXC4-201ENST00000303406 SPINK7P58062 85 aa10.33□□□□□ -0.76
HOXC4-201ENST00000303406 PRR15LQ9BU68 103 aa10.33□□□□□ -0.76
HOXC4-201ENST00000303406 ATP11AUNQ6ZP68 121 aa10.32□□□□□ -0.76
HOXC4-201ENST00000303406 XP32Q5T750 250 aa10.3□□□□□ -0.76
HOXC4-201ENST00000303406 PRO0628Q9UI54 55 aa10.26□□□□□ -0.77
HOXC4-201ENST00000303406 DMBT1Q9UGM3 2413 aaPredicted RBP10.24□□□□□ -0.77
HOXC4-201ENST00000303406 BRK1Q8WUW1 75 aa10.23□□□□□ -0.77
HOXC4-201ENST00000303406 TPRXLQ17RH7 258 aa10.2□□□□□ -0.78
HOXC4-201ENST00000303406 MYCBP2O75592 4640 aa10.2□□□□□ -0.78
HOXC4-201ENST00000303406 COX6B2Q6YFQ2 88 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms