RNA–Protein interactions for RNA: ENST00000265077.7

VCAN-201, Transcript of versican, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VCAN, Length 12,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-201ENST00000265077 COX6B2Q6YFQ2 88 aa3.51□□□□□ -1.85
VCAN-201ENST00000265077 Q8NDZ9 215 aa3.51□□□□□ -1.85
VCAN-201ENST00000265077 KRTAP10-3P60369 221 aa3.5□□□□□ -1.85
VCAN-201ENST00000265077 LINC00472Q9H8W2 130 aa3.49□□□□□ -1.85
VCAN-201ENST00000265077 SPRR1BP22528 89 aa3.49□□□□□ -1.85
VCAN-201ENST00000265077 KRTAP29-1A8MX34 341 aaPredicted RBP3.48□□□□□ -1.85
VCAN-201ENST00000265077 SPTBN5Q9NRC6 3674 aaKnown RBP3.48□□□□□ -1.85
VCAN-201ENST00000265077 NBPF19A0A087WUL8 3843 aa3.48□□□□□ -1.85
VCAN-201ENST00000265077 LINC00483Q53H64 154 aa3.48□□□□□ -1.85
VCAN-201ENST00000265077 SPEGQ15772 3267 aa3.47□□□□□ -1.85
VCAN-201ENST00000265077 KRTAP1-1Q07627 177 aa3.47□□□□□ -1.85
VCAN-201ENST00000265077 ZFHX3Q15911 3703 aa3.47□□□□□ -1.85
VCAN-201ENST00000265077 C20orf166-AS1Q96NR2 134 aa3.46□□□□□ -1.85
VCAN-201ENST00000265077 CAMK2N1Q7Z7J9 78 aa3.46□□□□□ -1.86
VCAN-201ENST00000265077 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.46□□□□□ -1.86
VCAN-201ENST00000265077 A8MUU9 505 aa3.46□□□□□ -1.86
VCAN-201ENST00000265077 TNP2Q05952 138 aa3.46□□□□□ -1.86
VCAN-201ENST00000265077 Q5W150 140 aa3.45□□□□□ -1.86
VCAN-201ENST00000265077 NOTCH2NLQ7Z3S9 236 aa3.45□□□□□ -1.86
VCAN-201ENST00000265077 J3QL48 77 aa3.45□□□□□ -1.86
VCAN-201ENST00000265077 MYO15AQ9UKN7 3530 aa3.44□□□□□ -1.86
VCAN-201ENST00000265077 RPL37P61927 97 aaKnown RBP3.44□□□□□ -1.86
VCAN-201ENST00000265077 H1FX-AS1Q4G0G2 97 aa3.44□□□□□ -1.86
VCAN-201ENST00000265077 PLAC8Q9NZF1 115 aa3.43□□□□□ -1.86
VCAN-201ENST00000265077 CDH23Q9H251 3354 aa3.43□□□□□ -1.86
VCAN-201ENST00000265077 Q6ZSA8 131 aa3.42□□□□□ -1.86
VCAN-201ENST00000265077 S4R3F8 94 aa3.42□□□□□ -1.86
VCAN-201ENST00000265077 OTOGQ6ZRI0 2925 aa3.41□□□□□ -1.86
VCAN-201ENST00000265077 KRTAP26-1Q6PEX3 210 aa3.41□□□□□ -1.86
VCAN-201ENST00000265077 SZT2Q5T011 3432 aa3.41□□□□□ -1.86
VCAN-201ENST00000265077 LOC400499M0QZD8 3231 aa3.41□□□□□ -1.86
VCAN-201ENST00000265077 SMR3BP02814 79 aaPredicted RBP3.39□□□□□ -1.87
VCAN-201ENST00000265077 MEGF8Q7Z7M0 2845 aa3.39□□□□□ -1.87
VCAN-201ENST00000265077 KRTAP4-16G5E9R7 235 aaPredicted RBP3.39□□□□□ -1.87
VCAN-201ENST00000265077 PANO1I0J062 215 aa3.38□□□□□ -1.87
VCAN-201ENST00000265077 KRTAP11-1Q8IUC1 163 aa3.37□□□□□ -1.87
VCAN-201ENST00000265077 FBN3Q75N90 2809 aa3.37□□□□□ -1.87
VCAN-201ENST00000265077 WDFY3Q8IZQ1 3526 aa3.33□□□□□ -1.88
VCAN-201ENST00000265077 TRRAPQ9Y4A5 3859 aa3.33□□□□□ -1.88
VCAN-201ENST00000265077 LAMA5O15230 3695 aa3.32□□□□□ -1.88
VCAN-201ENST00000265077 R4GN34 69 aa3.32□□□□□ -1.88
VCAN-201ENST00000265077 KRTAP1-5Q9BYS1 174 aa3.31□□□□□ -1.88
VCAN-201ENST00000265077 VPS13CQ709C8 3753 aa3.31□□□□□ -1.88
VCAN-201ENST00000265077 DCHS1Q96JQ0 3298 aa3.28□□□□□ -1.88
VCAN-201ENST00000265077 SPENQ96T58 3664 aaKnown RBP3.28□□□□□ -1.88
VCAN-201ENST00000265077 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.89
VCAN-201ENST00000265077 SMG1Q96Q15 3661 aaKnown RBP3.26□□□□□ -1.89
VCAN-201ENST00000265077 M0R2T5 61 aa3.25□□□□□ -1.89
VCAN-201ENST00000265077 KRTAP10-1P60331 282 aa3.25□□□□□ -1.89
VCAN-201ENST00000265077 M0QZ58 72 aa3.25□□□□□ -1.89
VCAN-201ENST00000265077 DMDP11532 3685 aa3.24□□□□□ -1.89
VCAN-201ENST00000265077 PLAC4Q8WY50 150 aa3.24□□□□□ -1.89
VCAN-201ENST00000265077 H0YAA0 97 aa3.23□□□□□ -1.89
VCAN-201ENST00000265077 P0C880 135 aa3.21□□□□□ -1.9
VCAN-201ENST00000265077 Q5VSD8 79 aa3.21□□□□□ -1.9
VCAN-201ENST00000265077 ALMS1Q8TCU4 4167 aa3.21□□□□□ -1.9
VCAN-201ENST00000265077 KRTAP13-1Q8IUC0 172 aa3.2□□□□□ -1.9
VCAN-201ENST00000265077 DNAH7Q8WXX0 4024 aa3.2□□□□□ -1.9
VCAN-201ENST00000265077 KRTAP10-2P60368 255 aa3.2□□□□□ -1.9
VCAN-201ENST00000265077 C10orf95Q9H7T3 257 aa3.2□□□□□ -1.9
VCAN-201ENST00000265077 CMYA5Q8N3K9 4069 aa3.19□□□□□ -1.9
VCAN-201ENST00000265077 HECTD4Q9Y4D8 3996 aa3.18□□□□□ -1.9
VCAN-201ENST00000265077 DNAH3Q8TD57 4116 aa3.18□□□□□ -1.9
VCAN-201ENST00000265077 ASPMQ8IZT6 3477 aa3.18□□□□□ -1.9
VCAN-201ENST00000265077 KRTAP7-1Q8IUC3 87 aa3.18□□□□□ -1.9
VCAN-201ENST00000265077 DNAH1Q9P2D7 4330 aa3.17□□□□□ -1.9
VCAN-201ENST00000265077 Q6ZRN7 208 aaPredicted RBP3.17□□□□□ -1.9
VCAN-201ENST00000265077 BSNQ9UPA5 3926 aa3.15□□□□□ -1.91
VCAN-201ENST00000265077 LYSTQ99698 3801 aa3.14□□□□□ -1.91
VCAN-201ENST00000265077 ZFHX4Q86UP3 3567 aa3.13□□□□□ -1.91
VCAN-201ENST00000265077 KRTAP13-2Q52LG2 175 aa3.12□□□□□ -1.91
VCAN-201ENST00000265077 PP632Q6XCG6 107 aa3.11□□□□□ -1.91
VCAN-201ENST00000265077 CSMD1Q96PZ7 3565 aa3.11□□□□□ -1.91
VCAN-201ENST00000265077 ZNF469Q96JG9 3925 aaPredicted RBP3.09□□□□□ -1.91
VCAN-201ENST00000265077 ANK2Q01484 3957 aa3.08□□□□□ -1.92
VCAN-201ENST00000265077 RELNP78509 3460 aa3.08□□□□□ -1.92
VCAN-201ENST00000265077 TNP1P09430 55 aa3.07□□□□□ -1.92
VCAN-201ENST00000265077 ANK3Q12955 4377 aaKnown RBP3.06□□□□□ -1.92
VCAN-201ENST00000265077 KRTAP15-1Q3LI76 137 aa3.05□□□□□ -1.92
VCAN-201ENST00000265077 DNAH2Q9P225 4427 aa3.05□□□□□ -1.92
VCAN-201ENST00000265077 TPRXLQ17RH7 258 aa3.05□□□□□ -1.92
VCAN-201ENST00000265077 KRTAP13-3Q3SY46 172 aa3.02□□□□□ -1.93
VCAN-201ENST00000265077 DNAH6Q9C0G6 4158 aa3.01□□□□□ -1.93
VCAN-201ENST00000265077 KRTAP10-8P60410 259 aa2.97□□□□□ -1.93
VCAN-201ENST00000265077 CUBNO60494 3623 aa2.97□□□□□ -1.93
VCAN-201ENST00000265077 KRTAP1-4P0C5Y4 121 aa2.97□□□□□ -1.93
VCAN-201ENST00000265077 SVEP1Q4LDE5 3571 aa2.96□□□□□ -1.94
VCAN-201ENST00000265077 DNAH10Q8IVF4 4471 aa2.96□□□□□ -1.94
VCAN-201ENST00000265077 CSMD3Q7Z407 3707 aa2.96□□□□□ -1.94
VCAN-201ENST00000265077 FRAS1Q86XX4 4008 aa2.95□□□□□ -1.94
VCAN-201ENST00000265077 MUC3AQ02505 3323 aa2.95□□□□□ -1.94
VCAN-201ENST00000265077 XP32Q5T750 250 aa2.95□□□□□ -1.94
VCAN-201ENST00000265077 KMT2AQ03164 3969 aa2.93□□□□□ -1.94
VCAN-201ENST00000265077 PRKDCP78527 4128 aaKnown RBP2.93□□□□□ -1.94
VCAN-201ENST00000265077 VPS13DQ5THJ4 4388 aa2.93□□□□□ -1.94
VCAN-201ENST00000265077 PRO2289Q9P1D8 64 aa2.92□□□□□ -1.94
VCAN-201ENST00000265077 KRTAP21-3Q3LHN1 58 aa2.92□□□□□ -1.94
VCAN-201ENST00000265077 HUWE1Q7Z6Z7 4374 aaKnown RBP2.92□□□□□ -1.94
VCAN-201ENST00000265077 INE1O15225 51 aa2.92□□□□□ -1.94
VCAN-201ENST00000265077 KRTAP12-2P59991 146 aa2.9□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 380.5 ms