RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 CSMD3Q7Z407 3707 aa9.89□□□□□ -0.83
GPC1-201ENST00000264039 KRTAP1-5Q9BYS1 174 aa9.86□□□□□ -0.83
GPC1-201ENST00000264039 Q5W150 140 aa9.83□□□□□ -0.84
GPC1-201ENST00000264039 PANO1I0J062 215 aa9.8□□□□□ -0.84
GPC1-201ENST00000264039 CRIPTQ9P021 101 aa9.79□□□□□ -0.84
GPC1-201ENST00000264039 SPACA4Q8TDM5 124 aa9.79□□□□□ -0.84
GPC1-201ENST00000264039 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.77□□□□□ -0.85
GPC1-201ENST00000264039 Q6ZR54 194 aa9.76□□□□□ -0.85
GPC1-201ENST00000264039 PSORS1C2Q9UIG4 136 aa9.76□□□□□ -0.85
GPC1-201ENST00000264039 SPRR1BP22528 89 aa9.75□□□□□ -0.85
GPC1-201ENST00000264039 Q8N1X5 172 aa9.75□□□□□ -0.85
GPC1-201ENST00000264039 FAM229AH3BQW9 127 aa9.73□□□□□ -0.85
GPC1-201ENST00000264039 KRTAP24-1Q3LI83 254 aa9.72□□□□□ -0.85
GPC1-201ENST00000264039 C1orf134Q5TEV5 83 aa9.72□□□□□ -0.85
GPC1-201ENST00000264039 TGP01266 2768 aa9.72□□□□□ -0.85
GPC1-201ENST00000264039 SSBP3-AS1Q7Z2R9 100 aa9.68□□□□□ -0.86
GPC1-201ENST00000264039 Q96NJ1 140 aa9.67□□□□□ -0.86
GPC1-201ENST00000264039 NBDYA0A0U1RRE5 68 aa9.67□□□□□ -0.86
GPC1-201ENST00000264039 K7ERS5 55 aa9.67□□□□□ -0.86
GPC1-201ENST00000264039 ZNF861PO60384 105 aa9.66□□□□□ -0.86
GPC1-201ENST00000264039 PLA2G1BP04054 148 aaKnown RBP9.66□□□□□ -0.86
GPC1-201ENST00000264039 IGLV5-52A0A0A0MRZ9 124 aa9.65□□□□□ -0.86
GPC1-201ENST00000264039 WWC2-AS2Q96NR7 200 aa9.63□□□□□ -0.87
GPC1-201ENST00000264039 PLAC8Q9NZF1 115 aa9.58□□□□□ -0.88
GPC1-201ENST00000264039 SPATA8Q6RVD6 105 aa9.58□□□□□ -0.88
GPC1-201ENST00000264039 DMAC1Q96GE9 116 aa9.58□□□□□ -0.88
GPC1-201ENST00000264039 SPINT4Q6UDR6 99 aa9.53□□□□□ -0.88
GPC1-201ENST00000264039 LY6G6CO95867 125 aa9.52□□□□□ -0.89
GPC1-201ENST00000264039 A0A087WTM6 91 aa9.5□□□□□ -0.89
GPC1-201ENST00000264039 APLNQ9ULZ1 77 aa9.49□□□□□ -0.89
GPC1-201ENST00000264039 FBN3Q75N90 2809 aa9.47□□□□□ -0.89
GPC1-201ENST00000264039 IGLV7-43P04211 117 aa9.47□□□□□ -0.89
GPC1-201ENST00000264039 ASB16-AS1Q495Z4 193 aa9.43□□□□□ -0.9
GPC1-201ENST00000264039 ANK3Q12955 4377 aaKnown RBP9.42□□□□□ -0.9
GPC1-201ENST00000264039 NUPR2A6NF83 97 aa9.42□□□□□ -0.9
GPC1-201ENST00000264039 KRTAP13-1Q8IUC0 172 aa9.42□□□□□ -0.9
GPC1-201ENST00000264039 A0A0D9SG42 100 aa9.4□□□□□ -0.9
GPC1-201ENST00000264039 C9orf92A6NGG3 77 aa9.4□□□□□ -0.9
GPC1-201ENST00000264039 A0A1B0GU33 70 aa9.4□□□□□ -0.91
GPC1-201ENST00000264039 LINC00483Q53H64 154 aa9.39□□□□□ -0.91
GPC1-201ENST00000264039 TYMSOSQ8TAI1 123 aa9.34□□□□□ -0.91
GPC1-201ENST00000264039 KRTAP25-1Q3LHN0 102 aa9.28□□□□□ -0.92
GPC1-201ENST00000264039 ROMO1P60602 79 aa9.28□□□□□ -0.92
GPC1-201ENST00000264039 LINC00304Q8N9R0 145 aa9.21□□□□□ -0.94
GPC1-201ENST00000264039 MEGF8Q7Z7M0 2845 aa9.2□□□□□ -0.94
GPC1-201ENST00000264039 KRTAP13-3Q3SY46 172 aa9.19□□□□□ -0.94
GPC1-201ENST00000264039 A8MUU9 505 aa9.19□□□□□ -0.94
GPC1-201ENST00000264039 Q6ZSA8 131 aa9.19□□□□□ -0.94
GPC1-201ENST00000264039 Q6ZRN7 208 aaPredicted RBP9.18□□□□□ -0.94
GPC1-201ENST00000264039 H0YAA0 97 aa9.15□□□□□ -0.95
GPC1-201ENST00000264039 H1FX-AS1Q4G0G2 97 aa9.12□□□□□ -0.95
GPC1-201ENST00000264039 DNAH10Q8IVF4 4471 aa9.12□□□□□ -0.95
GPC1-201ENST00000264039 SMR3BP02814 79 aaPredicted RBP9.1□□□□□ -0.95
GPC1-201ENST00000264039 KRTAP13-2Q52LG2 175 aa9.1□□□□□ -0.95
GPC1-201ENST00000264039 KRTAP10-2P60368 255 aa9.06□□□□□ -0.96
GPC1-201ENST00000264039 NDUFAF8A1L188 74 aa9.06□□□□□ -0.96
GPC1-201ENST00000264039 C10orf95Q9H7T3 257 aa8.99□□□□□ -0.97
GPC1-201ENST00000264039 RPL37P61927 97 aaKnown RBP8.95□□□□□ -0.98
GPC1-201ENST00000264039 COX6B2Q6YFQ2 88 aa8.95□□□□□ -0.98
GPC1-201ENST00000264039 KRTAP16-1A8MUX0 517 aa8.94□□□□□ -0.98
GPC1-201ENST00000264039 KRTAP10-1P60331 282 aa8.92□□□□□ -0.98
GPC1-201ENST00000264039 LYSTQ99698 3801 aa8.89□□□□□ -0.99
GPC1-201ENST00000264039 ANK2Q01484 3957 aa8.86□□□□□ -0.99
GPC1-201ENST00000264039 P0C880 135 aa8.84□□□□□ -0.99
GPC1-201ENST00000264039 HUWE1Q7Z6Z7 4374 aaKnown RBP8.74□□□□□ -1.01
GPC1-201ENST00000264039 C20orf166-AS1Q96NR2 134 aa8.74□□□□□ -1.01
GPC1-201ENST00000264039 KRTAP1-4P0C5Y4 121 aa8.72□□□□□ -1.01
GPC1-201ENST00000264039 DNAH9Q9NYC9 4486 aa8.67□□□□□ -1.02
GPC1-201ENST00000264039 TPRXLQ17RH7 258 aa8.65□□□□□ -1.02
GPC1-201ENST00000264039 KRTAP3-1Q9BYR8 98 aa8.65□□□□□ -1.02
GPC1-201ENST00000264039 S4R3F8 94 aa8.63□□□□□ -1.03
GPC1-201ENST00000264039 FRAS1Q86XX4 4008 aa8.61□□□□□ -1.03
GPC1-201ENST00000264039 CMYA5Q8N3K9 4069 aa8.56□□□□□ -1.04
GPC1-201ENST00000264039 DNAH8Q96JB1 4490 aa8.55□□□□□ -1.04
GPC1-201ENST00000264039 PLECQ15149 4684 aaKnown RBP8.54□□□□□ -1.04
GPC1-201ENST00000264039 A0A0A0MQY5 61 aa8.51□□□□□ -1.05
GPC1-201ENST00000264039 DNHD1Q96M86 4753 aa8.5□□□□□ -1.05
GPC1-201ENST00000264039 KRTAP13-4Q3LI77 160 aa8.5□□□□□ -1.05
GPC1-201ENST00000264039 ALMS1Q8TCU4 4167 aa8.48□□□□□ -1.05
GPC1-201ENST00000264039 LUZP6Q538Z0 58 aa8.47□□□□□ -1.05
GPC1-201ENST00000264039 DNAH17Q9UFH2 4485 aa8.45□□□□□ -1.06
GPC1-201ENST00000264039 DNAH1Q9P2D7 4330 aa8.42□□□□□ -1.06
GPC1-201ENST00000264039 DNAH11Q96DT5 4516 aa8.42□□□□□ -1.06
GPC1-201ENST00000264039 DNAH3Q8TD57 4116 aa8.41□□□□□ -1.06
GPC1-201ENST00000264039 KRTAP12-2P59991 146 aa8.4□□□□□ -1.07
GPC1-201ENST00000264039 DNAH7Q8WXX0 4024 aa8.39□□□□□ -1.07
GPC1-201ENST00000264039 M0QZ58 72 aa8.38□□□□□ -1.07
GPC1-201ENST00000264039 R4GN34 69 aa8.36□□□□□ -1.07
GPC1-201ENST00000264039 KRTAP10-6P60371 365 aaPredicted RBP8.34□□□□□ -1.07
GPC1-201ENST00000264039 KRTAP21-3Q3LHN1 58 aa8.32□□□□□ -1.08
GPC1-201ENST00000264039 PRKDCP78527 4128 aaKnown RBP8.32□□□□□ -1.08
GPC1-201ENST00000264039 KMT2AQ03164 3969 aa8.3□□□□□ -1.08
GPC1-201ENST00000264039 RPS29P62273 56 aaKnown RBP8.29□□□□□ -1.08
GPC1-201ENST00000264039 KRTAP15-1Q3LI76 137 aa8.27□□□□□ -1.09
GPC1-201ENST00000264039 LRP1BQ9NZR2 4599 aa8.27□□□□□ -1.09
GPC1-201ENST00000264039 CAMK2N1Q7Z7J9 78 aa8.25□□□□□ -1.09
GPC1-201ENST00000264039 STARD9Q9P2P6 4700 aa8.24□□□□□ -1.09
GPC1-201ENST00000264039 KRTAP10-8P60410 259 aa8.22□□□□□ -1.09
GPC1-201ENST00000264039 PLAC4Q8WY50 150 aa8.2□□□□□ -1.1
GPC1-201ENST00000264039 KRTAP12-1P59990 96 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms