RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 LIMD2Q9BT23 127 aa7.75□□□□□ -1.17
SNX1-201ENST00000261889 SACSQ9NZJ4 4579 aa7.74□□□□□ -1.17
SNX1-201ENST00000261889 IGLV7-46A0A075B6I9 117 aa7.74□□□□□ -1.17
SNX1-201ENST00000261889 NBDYA0A0U1RRE5 68 aa7.74□□□□□ -1.17
SNX1-201ENST00000261889 SPANXA2-OT1Q8N9U9 137 aa7.73□□□□□ -1.17
SNX1-201ENST00000261889 SPRR1BP22528 89 aa7.72□□□□□ -1.17
SNX1-201ENST00000261889 HECTD4Q9Y4D8 3996 aa7.72□□□□□ -1.17
SNX1-201ENST00000261889 A0A1B0GVX0 72 aa7.71□□□□□ -1.17
SNX1-201ENST00000261889 KRTAP13-1Q8IUC0 172 aa7.71□□□□□ -1.18
SNX1-201ENST00000261889 LOC101927531A0A1B0GV80 90 aa7.7□□□□□ -1.18
SNX1-201ENST00000261889 PRAC1Q96KF2 57 aa7.7□□□□□ -1.18
SNX1-201ENST00000261889 WWC2-AS2Q96NR7 200 aa7.7□□□□□ -1.18
SNX1-201ENST00000261889 DNAH11Q96DT5 4516 aa7.69□□□□□ -1.18
SNX1-201ENST00000261889 MRPL34Q9BQ48 92 aaKnown RBP7.69□□□□□ -1.18
SNX1-201ENST00000261889 HYDINQ4G0P3 5121 aa7.69□□□□□ -1.18
SNX1-201ENST00000261889 NUPR2A6NF83 97 aa7.68□□□□□ -1.18
SNX1-201ENST00000261889 ADM2Q7Z4H4 148 aa7.68□□□□□ -1.18
SNX1-201ENST00000261889 C14orf177Q52M58 125 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 SPACA4Q8TDM5 124 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 RBM12B-AS1Q9P1G2 102 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 FAT2Q9NYQ8 4349 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 Q6ZR54 194 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 Q75L30 129 aa7.67□□□□□ -1.18
SNX1-201ENST00000261889 RTL8CO15255 209 aa7.66□□□□□ -1.18
SNX1-201ENST00000261889 Q6ZRN7 208 aaPredicted RBP7.66□□□□□ -1.18
SNX1-201ENST00000261889 H3BPC8 53 aa7.65□□□□□ -1.18
SNX1-201ENST00000261889 A0A087WTM6 91 aa7.63□□□□□ -1.19
SNX1-201ENST00000261889 FLG2Q5D862 2391 aaPredicted RBP7.63□□□□□ -1.19
SNX1-201ENST00000261889 KTN1-AS1Q86SY8 53 aa7.63□□□□□ -1.19
SNX1-201ENST00000261889 IGLV5-52A0A0A0MRZ9 124 aa7.6□□□□□ -1.19
SNX1-201ENST00000261889 A6NN06 94 aa7.6□□□□□ -1.19
SNX1-201ENST00000261889 CDC42SE1Q9NRR8 79 aa7.6□□□□□ -1.19
SNX1-201ENST00000261889 LRP1BQ9NZR2 4599 aa7.6□□□□□ -1.19
SNX1-201ENST00000261889 PKD1P98161 4303 aa7.59□□□□□ -1.19
SNX1-201ENST00000261889 SPINK1P00995 79 aa7.59□□□□□ -1.19
SNX1-201ENST00000261889 TP53AIP1Q9HCN2 124 aa7.59□□□□□ -1.19
SNX1-201ENST00000261889 ATP11AUNQ6ZP68 121 aa7.59□□□□□ -1.19
SNX1-201ENST00000261889 RYR2Q92736 4967 aa7.59□□□□□ -1.19
SNX1-201ENST00000261889 IGKV2D-30A0A075B6S6 120 aa7.58□□□□□ -1.2
SNX1-201ENST00000261889 IGKV2-30P06310 120 aa7.58□□□□□ -1.2
SNX1-201ENST00000261889 LINC01558Q9Y6Z2 57 aa7.58□□□□□ -1.2
SNX1-201ENST00000261889 ZNF861PO60384 105 aa7.58□□□□□ -1.2
SNX1-201ENST00000261889 KMT2CQ8NEZ4 4911 aaKnown RBP7.58□□□□□ -1.2
SNX1-201ENST00000261889 ASB16-AS1Q495Z4 193 aa7.57□□□□□ -1.2
SNX1-201ENST00000261889 DMBT1Q9UGM3 2413 aaPredicted RBP7.56□□□□□ -1.2
SNX1-201ENST00000261889 LY6G6CO95867 125 aa7.54□□□□□ -1.2
SNX1-201ENST00000261889 LINC00483Q53H64 154 aa7.53□□□□□ -1.2
SNX1-201ENST00000261889 DNAH5Q8TE73 4624 aa7.51□□□□□ -1.21
SNX1-201ENST00000261889 LINC00313P59037 77 aa7.5□□□□□ -1.21
SNX1-201ENST00000261889 KRTAP10-2P60368 255 aa7.5□□□□□ -1.21
SNX1-201ENST00000261889 ZNF706Q9Y5V0 76 aaPredicted RBP7.5□□□□□ -1.21
SNX1-201ENST00000261889 PLAC8Q9NZF1 115 aa7.49□□□□□ -1.21
SNX1-201ENST00000261889 IGLV7-43P04211 117 aa7.49□□□□□ -1.21
SNX1-201ENST00000261889 RYR3Q15413 4870 aa7.49□□□□□ -1.21
SNX1-201ENST00000261889 C7orf65Q6ZTY9 151 aa7.47□□□□□ -1.21
SNX1-201ENST00000261889 Q8N1X5 172 aa7.47□□□□□ -1.21
SNX1-201ENST00000261889 A0A1B0GU69 56 aa7.47□□□□□ -1.21
SNX1-201ENST00000261889 ACYP2P14621 99 aa7.45□□□□□ -1.22
SNX1-201ENST00000261889 KRTAP13-3Q3SY46 172 aa7.45□□□□□ -1.22
SNX1-201ENST00000261889 KRTAP13-2Q52LG2 175 aa7.43□□□□□ -1.22
SNX1-201ENST00000261889 VPS13BQ7Z7G8 4022 aa7.43□□□□□ -1.22
SNX1-201ENST00000261889 C1orf134Q5TEV5 83 aa7.41□□□□□ -1.22
SNX1-201ENST00000261889 PKHD1P08F94 4074 aa7.39□□□□□ -1.23
SNX1-201ENST00000261889 DYNC1H1Q14204 4646 aaKnown RBP7.38□□□□□ -1.23
SNX1-201ENST00000261889 DMAC1Q96GE9 116 aa7.36□□□□□ -1.23
SNX1-201ENST00000261889 FAT1Q14517 4588 aa7.34□□□□□ -1.23
SNX1-201ENST00000261889 MIR22HGQ0VDD5 57 aa7.34□□□□□ -1.23
SNX1-201ENST00000261889 KRTAP10-1P60331 282 aa7.33□□□□□ -1.24
SNX1-201ENST00000261889 C9orf92A6NGG3 77 aa7.33□□□□□ -1.24
SNX1-201ENST00000261889 FAM229AH3BQW9 127 aa7.33□□□□□ -1.24
SNX1-201ENST00000261889 CRIPTQ9P021 101 aa7.31□□□□□ -1.24
SNX1-201ENST00000261889 SMR3BP02814 79 aaPredicted RBP7.3□□□□□ -1.24
SNX1-201ENST00000261889 CSAG1Q6PB30 78 aa7.29□□□□□ -1.24
SNX1-201ENST00000261889 A0A1B0GVY2 172 aa7.29□□□□□ -1.24
SNX1-201ENST00000261889 PLA2G1BP04054 148 aaKnown RBP7.28□□□□□ -1.24
SNX1-201ENST00000261889 C8orf87E5RJ46 101 aa7.28□□□□□ -1.24
SNX1-201ENST00000261889 APOBP04114 4563 aaKnown RBP7.28□□□□□ -1.24
SNX1-201ENST00000261889 KRTAP16-1A8MUX0 517 aa7.26□□□□□ -1.25
SNX1-201ENST00000261889 SSBP3-AS1Q7Z2R9 100 aa7.26□□□□□ -1.25
SNX1-201ENST00000261889 UQCR11O14957 56 aa7.25□□□□□ -1.25
SNX1-201ENST00000261889 MYCBP2O75592 4640 aa7.23□□□□□ -1.25
SNX1-201ENST00000261889 C4orf48Q5BLP8 95 aa7.23□□□□□ -1.25
SNX1-201ENST00000261889 TYMSOSQ8TAI1 123 aa7.22□□□□□ -1.25
SNX1-201ENST00000261889 KRTAP1-4P0C5Y4 121 aa7.21□□□□□ -1.25
SNX1-201ENST00000261889 SPATA8Q6RVD6 105 aa7.2□□□□□ -1.26
SNX1-201ENST00000261889 PKHD1L1Q86WI1 4243 aa7.19□□□□□ -1.26
SNX1-201ENST00000261889 Q6ZSA8 131 aa7.18□□□□□ -1.26
SNX1-201ENST00000261889 LINC01554Q52M75 96 aa7.17□□□□□ -1.26
SNX1-201ENST00000261889 EPPK1P58107 5090 aaKnown RBP7.16□□□□□ -1.26
SNX1-201ENST00000261889 HSPG2P98160 4391 aa7.14□□□□□ -1.27
SNX1-201ENST00000261889 H0YAA0 97 aa7.11□□□□□ -1.27
SNX1-201ENST00000261889 LRP1Q07954 4544 aaKnown RBP7.08□□□□□ -1.28
SNX1-201ENST00000261889 LINC00304Q8N9R0 145 aa7.06□□□□□ -1.28
SNX1-201ENST00000261889 RYR1P21817 5038 aa7.05□□□□□ -1.28
SNX1-201ENST00000261889 KRTAP3-1Q9BYR8 98 aa7.04□□□□□ -1.28
SNX1-201ENST00000261889 H3BS24 57 aa7.02□□□□□ -1.29
SNX1-201ENST00000261889 A0A0D9SG42 100 aa7□□□□□ -1.29
SNX1-201ENST00000261889 A0A1B0GU33 70 aa6.99□□□□□ -1.29
SNX1-201ENST00000261889 KRTAP10-4P60372 401 aaPredicted RBP6.98□□□□□ -1.29
SNX1-201ENST00000261889 KRTAP17-1Q9BYP8 105 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms