RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 RPS27LQ71UM5 84 aaKnown RBP0.05□□□□□ -2.4
CDKN3-201ENST00000216414 ABCA8O94911 1581 aa0.05□□□□□ -2.4
CDKN3-201ENST00000216414 FAT4Q6V0I7 4981 aa0.05□□□□□ -2.4
CDKN3-201ENST00000216414 MAP1AP78559 2803 aaPredicted RBP0.05□□□□□ -2.4
CDKN3-201ENST00000216414 TEP1Q99973 2627 aaKnown RBP0.04□□□□□ -2.4
CDKN3-201ENST00000216414 TACC2O95359 2948 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 FAM186AA6NE01 2351 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ERICH3Q5RHP9 1530 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 EFCAB6Q5THR3 1501 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 CLASP1Q7Z460 1538 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ASXL1Q8IXJ9 1541 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 DOPEY1Q5JWR5 2465 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 RIF1Q5UIP0 2472 aaKnown RBP0.04□□□□□ -2.4
CDKN3-201ENST00000216414 GLI2P10070 1586 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 TIAM1Q13009 1591 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 SNRPGP15A8MWD9 76 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 MT1AP04731 61 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 SPRR2EP22531 72 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 CD52P31358 61 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 KRTAP19-7Q3SYF9 63 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 MYO18BQ8IUG5 2567 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ABCA5Q8WWZ7 1642 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ADCY10Q96PN6 1610 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ALS2Q96Q42 1657 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 HUWE1Q7Z6Z7 4374 aaKnown RBP0.04□□□□□ -2.4
CDKN3-201ENST00000216414 LY75O60449 1722 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 TJP1Q07157 1748 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 CDC42BPAQ5VT25 1732 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 ITPR1Q14643 2758 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 NBEAL2Q6ZNJ1 2754 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 CCDC168Q8NDH2 2452 aa0.04□□□□□ -2.4
CDKN3-201ENST00000216414 CELSR1Q9NYQ6 3014 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 GCN1Q92616 2671 aaKnown RBP0.03□□□□□ -2.4
CDKN3-201ENST00000216414 HTTP42858 3142 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 COL6A3P12111 3177 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 SONP18583 2426 aaKnown RBP0.03□□□□□ -2.4
CDKN3-201ENST00000216414 ABCA9Q8IUA7 1624 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 MROH2AA6NES4 1674 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 DEFB136Q30KP8 78 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 KRTAP19-8Q3LI54 63 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 TOMM5Q8N4H5 51 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 RHPN1-AS1Q9BWJ2 59 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 BPTFQ12830 3046 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 ANK2Q01484 3957 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 ITPR3Q14573 2671 aa0.03□□□□□ -2.4
CDKN3-201ENST00000216414 MYCBP2O75592 4640 aa0.03□□□□□ -2.41
CDKN3-201ENST00000216414 CSMD3Q7Z407 3707 aa0.03□□□□□ -2.41
CDKN3-201ENST00000216414 DSPP15924 2871 aaKnown RBP0.03□□□□□ -2.41
CDKN3-201ENST00000216414 GPR98Q8WXG9 6306 aa0.03□□□□□ -2.41
CDKN3-201ENST00000216414 TRPM2O94759 1503 aa0.03□□□□□ -2.41
CDKN3-201ENST00000216414 SYCP2Q9BX26 1530 aa0.03□□□□□ -2.41
CDKN3-201ENST00000216414 USP9XQ93008 2570 aaPredicted RBP0.02□□□□□ -2.41
CDKN3-201ENST00000216414 CROCC2H7BZ55 1655 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 ITSN2Q9NZM3 1697 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 IGIPA6NJ69 53 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 POLR2KP53803 58 aaKnown RBP0.02□□□□□ -2.41
CDKN3-201ENST00000216414 LINC01590Q5TEZ4 76 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 SPRR2FQ96RM1 72 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 TOMM7Q9P0U1 55 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 USP9YO00507 2555 aaPredicted RBP0.02□□□□□ -2.41
CDKN3-201ENST00000216414 ZZEF1O43149 2961 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 ABCC8Q09428 1581 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 KMT2AQ03164 3969 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 ACACBO00763 2458 aa0.02□□□□□ -2.41
CDKN3-201ENST00000216414 FAM208AQ9UK61 1670 aaKnown RBP0.02□□□□□ -2.41
CDKN3-201ENST00000216414 LRP1Q07954 4544 aaKnown RBP0.01□□□□□ -2.41
CDKN3-201ENST00000216414 BSNQ9UPA5 3926 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 TNRC18O15417 2968 aaPredicted RBP0.01□□□□□ -2.41
CDKN3-201ENST00000216414 DMXL1Q9Y485 3027 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 HSPG2P98160 4391 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 LPAP08519 4548 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 NDUFA1O15239 70 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 MT1HP80294 61 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 ALMS1Q8TCU4 4167 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 FANCD2Q9BXW9 1451 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 CLTCL1P53675 1640 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 IQGAP3Q86VI3 1631 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 SYNE2Q8WXH0 6885 aaKnown RBP0.01□□□□□ -2.41
CDKN3-201ENST00000216414 TLN2Q9Y4G6 2542 aa0.01□□□□□ -2.41
CDKN3-201ENST00000216414 WDR87Q6ZQQ6 2873 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 KALRNO60229 2985 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 LAMA1P25391 3075 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 KIF21BO75037 1637 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 MT1HL1P0DM35 61 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 RPS29P62273 56 aaKnown RBP0□□□□□ -2.41
CDKN3-201ENST00000216414 SPTAN1Q13813 2472 aaKnown RBP0□□□□□ -2.41
CDKN3-201ENST00000216414 KRTAP6-2Q3LI66 62 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 FSIP2Q5CZC0 6907 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 DDX60Q8IY21 1712 aaKnown RBP0□□□□□ -2.41
CDKN3-201ENST00000216414 LEAP2Q969E1 77 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 MAST1Q9Y2H9 1570 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 HECTD4Q9Y4D8 3996 aa0□□□□□ -2.41
CDKN3-201ENST00000216414 COL6A5A8TX70 2615 aa-0□□□□□ -2.41
CDKN3-201ENST00000216414 MYO9AB2RTY4 2548 aa-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 LMO7Q8WWI1 1683 aa-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 REV3LO60673 3130 aa-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 DSTQ03001 7570 aaKnown RBP-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 FRYQ5TBA9 3013 aa-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 LRBAP50851 2863 aa-0.01□□□□□ -2.41
CDKN3-201ENST00000216414 NIPBLQ6KC79 2804 aaeCLIP-0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms