RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KLLNB2CW77 178 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 GAS8-AS1O95177 125 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 COL12A1Q99715 3063 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 LINC01546A6NGU7 62 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 BRCA2P51587 3418 aa1.9□□□□□ -2.1
SCN1A-219ENST00000641575 R4GN34 69 aa1.9□□□□□ -2.1
SCN1A-219ENST00000641575 AKAP9Q99996 3911 aa1.9□□□□□ -2.1
SCN1A-219ENST00000641575 KLKP1Q107X0 134 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 COL4A5P29400 1685 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 PRUNE2Q8WUY3 3088 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 A8MTW9 85 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 SMR3AQ99954 134 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 NBPF19A0A087WUL8 3843 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 DNAH10OSP0CZ25 163 aa1.9□□□□□ -2.11
SCN1A-219ENST00000641575 TRBV7-4A0A0J9YYF1 115 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 A8MWP4 228 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 ZFHX3Q15911 3703 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 WISP2O76076 250 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 A0A1W2PNM2 257 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 CDH23Q9H251 3354 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 OCR1Q9BZK8 76 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 KRTAP16-1A8MUX0 517 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 A0A087X002 238 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 C10orf99Q6UWK7 81 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 Q6ZRU5 148 aa1.89□□□□□ -2.11
SCN1A-219ENST00000641575 U3KQA8 63 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 FAM218AQ96MZ4 157 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 KRTAP24-1Q3LI83 254 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 A0A0D9SG42 100 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 SMCPP49901 116 aaPredicted RBP1.88□□□□□ -2.11
SCN1A-219ENST00000641575 CASC10Q5T4H9 136 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 Q75L30 129 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 REV3LO60673 3130 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 Q5VSD8 79 aa1.88□□□□□ -2.11
SCN1A-219ENST00000641575 Q6ZRX8 168 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 LINC00476Q8WZB0 136 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 C11orf21Q9P2W6 132 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 RELNP78509 3460 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 FP248Q71RG6 208 aaPredicted RBP1.87□□□□□ -2.11
SCN1A-219ENST00000641575 GVQW2A0A096LPI5 108 aaPredicted RBP1.87□□□□□ -2.11
SCN1A-219ENST00000641575 KRTAP21-3Q3LHN1 58 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 TLX1NBP0CAT3 122 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 FBN2P35556 2912 aa1.87□□□□□ -2.11
SCN1A-219ENST00000641575 A0A087WTM6 91 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 URB1-AS1Q96HZ7 61 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 P0C880 135 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 ODF3L2Q3SX64 289 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 ST20-AS1Q8NBB2 130 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 PRR34Q9NV39 138 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 VPS13AQ96RL7 3174 aa1.86□□□□□ -2.11
SCN1A-219ENST00000641575 PHF5AQ7RTV0 110 aaKnown RBP1.86□□□□□ -2.11
SCN1A-219ENST00000641575 DMDP11532 3685 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 A0A096LNJ9 63 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 OBSCN-AS1Q96MR7 158 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 FAM104AQ969W3 186 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 PRAC1Q96KF2 57 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 FAM229BQ4G0N7 80 aa1.85□□□□□ -2.11
SCN1A-219ENST00000641575 ATMQ13315 3056 aa1.84□□□□□ -2.11
SCN1A-219ENST00000641575 CELSR1Q9NYQ6 3014 aa1.84□□□□□ -2.11
SCN1A-219ENST00000641575 IGLV5-48A0A075B6I7 105 aa1.84□□□□□ -2.11
SCN1A-219ENST00000641575 SPINK7P58062 85 aa1.84□□□□□ -2.11
SCN1A-219ENST00000641575 C18orf65Q6ZTR6 163 aa1.84□□□□□ -2.11
SCN1A-219ENST00000641575 FREM2Q5SZK8 3169 aa1.84□□□□□ -2.12
SCN1A-219ENST00000641575 C9orf92A6NGG3 77 aa1.84□□□□□ -2.12
SCN1A-219ENST00000641575 S4R3F8 94 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 PRO2289Q9P1D8 64 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 H1FX-AS1Q4G0G2 97 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 LAMA3Q16787 3333 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 ASPMQ8IZT6 3477 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 CFAP47Q6ZTR5 3102 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 A0A1B0GVX0 72 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 SMR3BP02814 79 aaPredicted RBP1.83□□□□□ -2.12
SCN1A-219ENST00000641575 SZT2Q5T011 3432 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 A0A1B0GU33 70 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 ROMO1P60602 79 aa1.83□□□□□ -2.12
SCN1A-219ENST00000641575 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.83□□□□□ -2.12
SCN1A-219ENST00000641575 BOD1L1Q8NFC6 3051 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 PP632Q6XCG6 107 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 Q8NAQ8 132 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 VCANP13611 3396 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 IGFL1Q6UW32 110 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 Q5XG85 94 aa1.82□□□□□ -2.12
SCN1A-219ENST00000641575 CNBPP62633 177 aaKnown RBP1.82□□□□□ -2.12
SCN1A-219ENST00000641575 A0A1W2PNU3 283 aaPredicted RBP1.81□□□□□ -2.12
SCN1A-219ENST00000641575 ZCCHC13Q8WW36 166 aaKnown RBP1.81□□□□□ -2.12
SCN1A-219ENST00000641575 DSCR10P59022 87 aa1.81□□□□□ -2.12
SCN1A-219ENST00000641575 BSNQ9UPA5 3926 aa1.81□□□□□ -2.12
SCN1A-219ENST00000641575 CRIP3Q6Q6R5 217 aa1.81□□□□□ -2.12
SCN1A-219ENST00000641575 C15orf56Q8N910 161 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 K7EIL1 84 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 KLK9Q2XQG4 91 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 Q8N1X5 172 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 PRR26Q8N8Z3 221 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 FBN1P35555 2871 aaKnown RBP1.8□□□□□ -2.12
SCN1A-219ENST00000641575 HTTP42858 3142 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 LCE6AA0A183 80 aa1.8□□□□□ -2.12
SCN1A-219ENST00000641575 SPTBN5Q9NRC6 3674 aaKnown RBP1.79□□□□□ -2.12
SCN1A-219ENST00000641575 LINC00612Q8N6U2 182 aa1.79□□□□□ -2.12
SCN1A-219ENST00000641575 Q5VV11 94 aa1.79□□□□□ -2.12
SCN1A-219ENST00000641575 SPENQ96T58 3664 aaKnown RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms