RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SDK1Q7Z5N4 2213 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 EFCAB6Q5THR3 1501 aa0.73□□□□□ -2.29
CD44-239ENST00000639002 COL6A6A6NMZ7 2263 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 DOPEY2Q9Y3R5 2298 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 CCDC180Q9P1Z9 1646 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 SAMD9Q5K651 1589 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 TRBV7-4A0A0J9YYF1 115 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 DEFB112Q30KQ8 113 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 HEPN1Q6WQI6 88 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 SSBP3-AS1Q7Z2R9 100 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 WFDC9Q8NEX5 89 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 EFCAB5A4FU69 1503 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 QSER1Q2KHR3 1735 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 TIAM2Q8IVF5 1701 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 MGAQ8IWI9 3026 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 HFM1A2PYH4 1435 aa0.72□□□□□ -2.29
CD44-239ENST00000639002 PAPPAQ13219 1627 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 BCORQ6W2J9 1755 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 MED13LQ71F56 2210 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 H3BVH4 76 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 HMGA1P17096 107 aaKnown RBP0.71□□□□□ -2.3
CD44-239ENST00000639002 PIGYQ3MUY2 71 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 GAFA1Q96PS6 74 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 PRO3102Q9H379 93 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 PLAC8Q9NZF1 115 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 GNG13Q9P2W3 67 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 ITSN1Q15811 1721 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 CNTRLQ7Z7A1 2325 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 CENPEQ02224 2701 aa0.71□□□□□ -2.3
CD44-239ENST00000639002 ASCC3Q8N3C0 2202 aaKnown RBP0.7□□□□□ -2.3
CD44-239ENST00000639002 MAGI3Q5TCQ9 1506 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 POLR1AO95602 1720 aaPredicted RBP0.7□□□□□ -2.3
CD44-239ENST00000639002 LAMA1P25391 3075 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 SPINK7P58062 85 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 COX6A2Q02221 97 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 USMG5Q96IX5 58 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 CUBNO60494 3623 aa0.7□□□□□ -2.3
CD44-239ENST00000639002 ADGRG4Q8IZF6 3080 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 A0A087WWC5 75 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 TRAV21A0A0B4J279 112 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 Q5BKY6 102 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 TIAM1Q13009 1591 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 F5P12259 2224 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 WIZO95785 1651 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 NHSQ6T4R5 1651 aa0.69□□□□□ -2.3
CD44-239ENST00000639002 SPTY2D1-AS1A0A0U1RR47 76 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 COX8AP10176 69 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 ATXN8Q156A1 80 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 SMIM5Q71RC9 77 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 CNFNQ9BYD5 112 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 TP53AIP1Q9HCN2 124 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 PARP4Q9UKK3 1724 aaKnown RBP0.68□□□□□ -2.3
CD44-239ENST00000639002 ANKRD50Q9ULJ7 1429 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 PREX1Q8TCU6 1659 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 CADP27708 2225 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 MYO7AQ13402 2215 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 CACNA1CQ13936 2221 aa0.68□□□□□ -2.3
CD44-239ENST00000639002 ABCA9Q8IUA7 1624 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 TECTAO75443 2155 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 ABCA1O95477 2261 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 CEP170BQ9Y4F5 1589 aaPredicted RBP0.67□□□□□ -2.3
CD44-239ENST00000639002 FXYD6-FXYD2A0A087WZ82 144 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 I3L3M4 83 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 COX7BP24311 80 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 NREPQ16612 68 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 C10orf95Q9H7T3 257 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 CRIPTQ9P021 101 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 LMTK2Q8IWU2 1503 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 ASXL1Q8IXJ9 1541 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 MADDQ8WXG6 1647 aa0.67□□□□□ -2.3
CD44-239ENST00000639002 EIF2AK4Q9P2K8 1649 aaKnown RBP0.67□□□□□ -2.3
CD44-239ENST00000639002 DDX60LQ5H9U9 1706 aaKnown RBP0.67□□□□□ -2.3
CD44-239ENST00000639002 CACNA1EQ15878 2313 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 SRRM2Q9UQ35 2752 aaKnown RBP0.66□□□□□ -2.3
CD44-239ENST00000639002 TULP4Q9NRJ4 1543 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 LINC00959A0A1B0GUT2 108 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 IFI6P09912 130 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 PRO0255Q9UI72 69 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 HILPDAQ9Y5L2 63 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 DNAJC13O75165 2243 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 RICTORQ6R327 1708 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 FMN2Q9NZ56 1722 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 TSC2P49815 1807 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 CDC42BPGQ6DT37 1551 aa0.66□□□□□ -2.3
CD44-239ENST00000639002 ZNF831Q5JPB2 1677 aa0.65□□□□□ -2.3
CD44-239ENST00000639002 CHD9Q3L8U1 2897 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 VPS13CQ709C8 3753 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 NRAPQ86VF7 1730 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 DOT1LQ8TEK3 1739 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 Q8IZM0 81 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 DIP2AQ14689 1571 aa0.65□□□□□ -2.31
CD44-239ENST00000639002 USP32Q8NFA0 1604 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 CPSF4LA6NMK7 179 aaKnown RBP0.64□□□□□ -2.31
CD44-239ENST00000639002 CCL22O00626 93 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 MRPL33O75394 65 aaKnown RBP0.64□□□□□ -2.31
CD44-239ENST00000639002 SFTA3P0C7M3 94 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 PRB3Q04118 309 aaPredicted RBP0.64□□□□□ -2.31
CD44-239ENST00000639002 UBL5Q9BZL1 73 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 CD163L1Q9NR16 1453 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 LAMC1P11047 1609 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms