RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 Q6ZSA8 131 aa8.91□□□□□ -0.98
CLN3-242ENST00000635958 FAM19A5Q7Z5A7 132 aaPredicted RBP8.91□□□□□ -0.98
CLN3-242ENST00000635958 C7orf33Q8WU49 177 aa8.9□□□□□ -0.98
CLN3-242ENST00000635958 PKHD1P08F94 4074 aa8.89□□□□□ -0.99
CLN3-242ENST00000635958 A0A1B0GW54 56 aa8.89□□□□□ -0.99
CLN3-242ENST00000635958 HAMPP81172 84 aa8.89□□□□□ -0.99
CLN3-242ENST00000635958 MRPL55Q7Z7F7 128 aaKnown RBP8.89□□□□□ -0.99
CLN3-242ENST00000635958 PLAC8Q9NZF1 115 aa8.89□□□□□ -0.99
CLN3-242ENST00000635958 FAM30AQ9NZY2 134 aa8.89□□□□□ -0.99
CLN3-242ENST00000635958 NDUFC1O43677 76 aa8.88□□□□□ -0.99
CLN3-242ENST00000635958 IGLV1-50A0A075B6I6 118 aa8.87□□□□□ -0.99
CLN3-242ENST00000635958 LRP1BQ9NZR2 4599 aa8.86□□□□□ -0.99
CLN3-242ENST00000635958 KLKP1Q107X0 134 aa8.86□□□□□ -0.99
CLN3-242ENST00000635958 C5orf47Q569G3 176 aa8.86□□□□□ -0.99
CLN3-242ENST00000635958 LINC00528Q8N1L1 170 aa8.86□□□□□ -0.99
CLN3-242ENST00000635958 KCNQ1DNQ9H478 68 aa8.86□□□□□ -0.99
CLN3-242ENST00000635958 DYNC1H1Q14204 4646 aaKnown RBP8.85□□□□□ -0.99
CLN3-242ENST00000635958 ERC2-IT1O76042 136 aa8.84□□□□□ -0.99
CLN3-242ENST00000635958 CYSTM1Q9H1C7 97 aa8.84□□□□□ -0.99
CLN3-242ENST00000635958 PHF5AQ7RTV0 110 aaKnown RBP8.84□□□□□ -0.99
CLN3-242ENST00000635958 C20orf197Q8N268 126 aa8.84□□□□□ -0.99
CLN3-242ENST00000635958 ATP5EP56381 51 aaPredicted RBP8.83□□□□□ -1
CLN3-242ENST00000635958 CIRBP-AS1Q8TBR5 109 aa8.83□□□□□ -1
CLN3-242ENST00000635958 FAM236DA0A1B0GTK5 79 aa8.82□□□□□ -1
CLN3-242ENST00000635958 RPL37AP8A6NKH3 93 aa8.82□□□□□ -1
CLN3-242ENST00000635958 FAM236CP0DP71 79 aa8.82□□□□□ -1
CLN3-242ENST00000635958 SERP1Q9Y6X1 66 aa8.82□□□□□ -1
CLN3-242ENST00000635958 PRYO14603 147 aa8.81□□□□□ -1
CLN3-242ENST00000635958 SCXQ7RTU7 201 aa8.81□□□□□ -1
CLN3-242ENST00000635958 SPRR1AP35321 89 aa8.8□□□□□ -1
CLN3-242ENST00000635958 KRTAP11-1Q8IUC1 163 aa8.8□□□□□ -1
CLN3-242ENST00000635958 DHRS4-AS1Q9P1J3 65 aa8.8□□□□□ -1
CLN3-242ENST00000635958 HERC2O95714 4834 aa8.79□□□□□ -1
CLN3-242ENST00000635958 KRTAP4-16G5E9R7 235 aaPredicted RBP8.78□□□□□ -1
CLN3-242ENST00000635958 UBE2BP63146 152 aa8.78□□□□□ -1
CLN3-242ENST00000635958 H7BZZ5 65 aa8.77□□□□□ -1
CLN3-242ENST00000635958 NREPQ16612 68 aa8.77□□□□□ -1
CLN3-242ENST00000635958 REG3GQ6UW15 175 aa8.77□□□□□ -1.01
CLN3-242ENST00000635958 IGLV5-48A0A075B6I7 105 aa8.75□□□□□ -1.01
CLN3-242ENST00000635958 KIAA1109Q2LD37 5005 aa8.74□□□□□ -1.01
CLN3-242ENST00000635958 APOBP04114 4563 aaKnown RBP8.74□□□□□ -1.01
CLN3-242ENST00000635958 BPY2O14599 106 aa8.73□□□□□ -1.01
CLN3-242ENST00000635958 ETDCA0A1B0GVM5 59 aa8.72□□□□□ -1.01
CLN3-242ENST00000635958 PSORS1C2Q9UIG4 136 aa8.72□□□□□ -1.01
CLN3-242ENST00000635958 Q6ZRX8 168 aa8.71□□□□□ -1.01
CLN3-242ENST00000635958 H0Y9J4 135 aa8.7□□□□□ -1.02
CLN3-242ENST00000635958 OXTP01178 125 aa8.7□□□□□ -1.02
CLN3-242ENST00000635958 IGKV4-1P06312 121 aa8.7□□□□□ -1.02
CLN3-242ENST00000635958 SMIM26A0A096LP01 95 aa8.69□□□□□ -1.02
CLN3-242ENST00000635958 Q8N377 158 aa8.69□□□□□ -1.02
CLN3-242ENST00000635958 KRTAP13-1Q8IUC0 172 aa8.68□□□□□ -1.02
CLN3-242ENST00000635958 F8WEM9 126 aa8.68□□□□□ -1.02
CLN3-242ENST00000635958 Q5XG85 94 aa8.68□□□□□ -1.02
CLN3-242ENST00000635958 TMEM254Q8TBM7 123 aa8.67□□□□□ -1.02
CLN3-242ENST00000635958 Q9BRP9 147 aa8.67□□□□□ -1.02
CLN3-242ENST00000635958 CDK2AP2O75956 126 aa8.66□□□□□ -1.02
CLN3-242ENST00000635958 C1orf137Q5JT78 98 aa8.66□□□□□ -1.02
CLN3-242ENST00000635958 PRLHP81277 87 aa8.65□□□□□ -1.02
CLN3-242ENST00000635958 OCR1Q9BZK8 76 aa8.65□□□□□ -1.02
CLN3-242ENST00000635958 SNURFQ9Y675 71 aa8.65□□□□□ -1.02
CLN3-242ENST00000635958 RYR1P21817 5038 aa8.64□□□□□ -1.03
CLN3-242ENST00000635958 UBE2AP49459 152 aa8.64□□□□□ -1.03
CLN3-242ENST00000635958 SPRR4Q96PI1 79 aa8.64□□□□□ -1.03
CLN3-242ENST00000635958 IGLV7-43P04211 117 aa8.63□□□□□ -1.03
CLN3-242ENST00000635958 Q8NBF4 154 aa8.63□□□□□ -1.03
CLN3-242ENST00000635958 A0A0U1RQV1 116 aa8.62□□□□□ -1.03
CLN3-242ENST00000635958 ZNF861PO60384 105 aa8.62□□□□□ -1.03
CLN3-242ENST00000635958 DEFB105AQ8NG35 78 aa8.62□□□□□ -1.03
CLN3-242ENST00000635958 VPS13BQ7Z7G8 4022 aa8.61□□□□□ -1.03
CLN3-242ENST00000635958 FAT1Q14517 4588 aa8.61□□□□□ -1.03
CLN3-242ENST00000635958 C4orf26Q17RF5 130 aa8.61□□□□□ -1.03
CLN3-242ENST00000635958 SRRM2Q9UQ35 2752 aaKnown RBP8.61□□□□□ -1.03
CLN3-242ENST00000635958 PCLOQ9Y6V0 5065 aa8.61□□□□□ -1.03
CLN3-242ENST00000635958 SMR3BP02814 79 aaPredicted RBP8.6□□□□□ -1.03
CLN3-242ENST00000635958 HIGD2AQ9BW72 106 aa8.6□□□□□ -1.03
CLN3-242ENST00000635958 A0A1W2PNM2 257 aa8.59□□□□□ -1.03
CLN3-242ENST00000635958 HSPG2P98160 4391 aa8.59□□□□□ -1.03
CLN3-242ENST00000635958 RPL37AP61513 92 aaKnown RBP8.58□□□□□ -1.04
CLN3-242ENST00000635958 HRCT1Q6UXD1 115 aa8.57□□□□□ -1.04
CLN3-242ENST00000635958 KRTAP10-4P60372 401 aaPredicted RBP8.56□□□□□ -1.04
CLN3-242ENST00000635958 ST20-AS1Q8NBB2 130 aa8.55□□□□□ -1.04
CLN3-242ENST00000635958 Q8N9L7 120 aa8.54□□□□□ -1.04
CLN3-242ENST00000635958 IGLV8-61A0A075B6I0 122 aa8.53□□□□□ -1.04
CLN3-242ENST00000635958 ABCA13Q86UQ4 5058 aa8.52□□□□□ -1.04
CLN3-242ENST00000635958 SPRR1BP22528 89 aa8.52□□□□□ -1.04
CLN3-242ENST00000635958 FAM229AH3BQW9 127 aa8.52□□□□□ -1.05
CLN3-242ENST00000635958 ZNF706Q9Y5V0 76 aaPredicted RBP8.51□□□□□ -1.05
CLN3-242ENST00000635958 SMIM29Q86T20 159 aa8.5□□□□□ -1.05
CLN3-242ENST00000635958 PLA2G1BP04054 148 aaKnown RBP8.5□□□□□ -1.05
CLN3-242ENST00000635958 LINC00483Q53H64 154 aa8.5□□□□□ -1.05
CLN3-242ENST00000635958 SPINK6Q6UWN8 80 aa8.5□□□□□ -1.05
CLN3-242ENST00000635958 PRO0628Q9UI54 55 aa8.5□□□□□ -1.05
CLN3-242ENST00000635958 DSCR10P59022 87 aa8.49□□□□□ -1.05
CLN3-242ENST00000635958 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
CLN3-242ENST00000635958 NDUFB1O75438 58 aa8.47□□□□□ -1.05
CLN3-242ENST00000635958 HCG22E2RYF7 251 aa8.47□□□□□ -1.05
CLN3-242ENST00000635958 Q5VSD8 79 aa8.46□□□□□ -1.06
CLN3-242ENST00000635958 Q8N1X5 172 aa8.46□□□□□ -1.06
CLN3-242ENST00000635958 ZCCHC13Q8WW36 166 aaKnown RBP8.46□□□□□ -1.06
CLN3-242ENST00000635958 KRTAP4-5Q9BYR2 181 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms