RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CCDC179H3BU77 68 aa7.12□□□□□ -1.27
PDPN-211ENST00000617617 HIGD2AQ9BW72 106 aa7.11□□□□□ -1.27
PDPN-211ENST00000617617 JMJD7-PLA2G4BH0Y9G9 81 aa7.11□□□□□ -1.27
PDPN-211ENST00000617617 RPL37AP61513 92 aaKnown RBP7.11□□□□□ -1.27
PDPN-211ENST00000617617 SPRR4Q96PI1 79 aa7.11□□□□□ -1.27
PDPN-211ENST00000617617 RYR1P21817 5038 aa7.11□□□□□ -1.27
PDPN-211ENST00000617617 HAMPP81172 84 aa7.1□□□□□ -1.27
PDPN-211ENST00000617617 ST20-AS1Q8NBB2 130 aa7.1□□□□□ -1.27
PDPN-211ENST00000617617 SMIM29Q86T20 159 aa7.1□□□□□ -1.27
PDPN-211ENST00000617617 IGLV8-61A0A075B6I0 122 aa7.09□□□□□ -1.27
PDPN-211ENST00000617617 NDUFV3P56181 108 aaKnown RBP7.09□□□□□ -1.27
PDPN-211ENST00000617617 C5orf47Q569G3 176 aa7.09□□□□□ -1.27
PDPN-211ENST00000617617 HSPG2P98160 4391 aa7.09□□□□□ -1.27
PDPN-211ENST00000617617 SPINK6Q6UWN8 80 aa7.09□□□□□ -1.28
PDPN-211ENST00000617617 LOC110117498A0A087WWA1 95 aa7.07□□□□□ -1.28
PDPN-211ENST00000617617 FAM229BQ4G0N7 80 aa7.06□□□□□ -1.28
PDPN-211ENST00000617617 EPPK1P58107 5090 aaKnown RBP7.05□□□□□ -1.28
PDPN-211ENST00000617617 PDE6GP18545 87 aa7.05□□□□□ -1.28
PDPN-211ENST00000617617 PLA2G1BP04054 148 aaKnown RBP7.05□□□□□ -1.28
PDPN-211ENST00000617617 TRBV7-4A0A0J9YYF1 115 aa7.05□□□□□ -1.28
PDPN-211ENST00000617617 RBM3P98179 157 aaKnown RBP7.04□□□□□ -1.28
PDPN-211ENST00000617617 DEFB105AQ8NG35 78 aa7.04□□□□□ -1.28
PDPN-211ENST00000617617 LAMTOR3Q9UHA4 124 aa7.04□□□□□ -1.28
PDPN-211ENST00000617617 FAM229AH3BQW9 127 aa7.02□□□□□ -1.29
PDPN-211ENST00000617617 GAGE2AQ6NT46 116 aa7.02□□□□□ -1.29
PDPN-211ENST00000617617 A0A1B0GW54 56 aa7.01□□□□□ -1.29
PDPN-211ENST00000617617 SMR3BP02814 79 aaPredicted RBP7.01□□□□□ -1.29
PDPN-211ENST00000617617 KRTAP1-4P0C5Y4 121 aa7.01□□□□□ -1.29
PDPN-211ENST00000617617 Q6JHZ5 121 aa7.01□□□□□ -1.29
PDPN-211ENST00000617617 Q6ZQT0 140 aa7.01□□□□□ -1.29
PDPN-211ENST00000617617 F8WEM9 126 aa7□□□□□ -1.29
PDPN-211ENST00000617617 Q6Q795 121 aa7□□□□□ -1.29
PDPN-211ENST00000617617 FAM240AA0A1B0GVK7 77 aa7□□□□□ -1.29
PDPN-211ENST00000617617 DSCR8Q96T75 97 aa7□□□□□ -1.29
PDPN-211ENST00000617617 CCKP06307 115 aa6.99□□□□□ -1.29
PDPN-211ENST00000617617 Q8N1X5 172 aa6.99□□□□□ -1.29
PDPN-211ENST00000617617 SRRM2Q9UQ35 2752 aaKnown RBP6.99□□□□□ -1.29
PDPN-211ENST00000617617 C3orf22Q8N5N4 141 aa6.99□□□□□ -1.29
PDPN-211ENST00000617617 FAT1Q14517 4588 aa6.98□□□□□ -1.29
PDPN-211ENST00000617617 C14orf132Q9NPU4 83 aa6.98□□□□□ -1.29
PDPN-211ENST00000617617 Q8NBF4 154 aa6.98□□□□□ -1.29
PDPN-211ENST00000617617 ACYP1P07311 99 aa6.97□□□□□ -1.29
PDPN-211ENST00000617617 Q5VSD8 79 aa6.97□□□□□ -1.29
PDPN-211ENST00000617617 SSBP3-AS1Q7Z2R9 100 aa6.96□□□□□ -1.3
PDPN-211ENST00000617617 BIRC6Q9NR09 4857 aa6.95□□□□□ -1.3
PDPN-211ENST00000617617 IGFL1Q6UW32 110 aa6.95□□□□□ -1.3
PDPN-211ENST00000617617 CD164Q04900 197 aa6.94□□□□□ -1.3
PDPN-211ENST00000617617 CRYGAP11844 174 aa6.93□□□□□ -1.3
PDPN-211ENST00000617617 KRTAP17-1Q9BYP8 105 aa6.93□□□□□ -1.3
PDPN-211ENST00000617617 KIAA1109Q2LD37 5005 aa6.93□□□□□ -1.3
PDPN-211ENST00000617617 KRTAP13-2Q52LG2 175 aa6.92□□□□□ -1.3
PDPN-211ENST00000617617 A0A1W2PNM2 257 aa6.92□□□□□ -1.3
PDPN-211ENST00000617617 A0A087X002 238 aa6.91□□□□□ -1.3
PDPN-211ENST00000617617 J3KT08 172 aa6.91□□□□□ -1.3
PDPN-211ENST00000617617 ANAPC11Q9NYG5 84 aa6.91□□□□□ -1.3
PDPN-211ENST00000617617 IGLV9-49A0A0B4J1Y8 123 aa6.9□□□□□ -1.3
PDPN-211ENST00000617617 TRBV7-7A0A0K0K1E9 115 aa6.9□□□□□ -1.3
PDPN-211ENST00000617617 MOBPQ13875 183 aa6.9□□□□□ -1.3
PDPN-211ENST00000617617 C9orf153Q5TBE3 101 aa6.9□□□□□ -1.3
PDPN-211ENST00000617617 Q5XG85 94 aa6.87□□□□□ -1.31
PDPN-211ENST00000617617 RPS29P62273 56 aaKnown RBP6.86□□□□□ -1.31
PDPN-211ENST00000617617 FAT3Q8TDW7 4589 aa6.86□□□□□ -1.31
PDPN-211ENST00000617617 HERC2O95714 4834 aa6.85□□□□□ -1.31
PDPN-211ENST00000617617 ASB16-AS1Q495Z4 193 aa6.85□□□□□ -1.31
PDPN-211ENST00000617617 LINC00846Q9NV44 126 aa6.85□□□□□ -1.31
PDPN-211ENST00000617617 RPS28P62857 69 aaKnown RBP6.84□□□□□ -1.31
PDPN-211ENST00000617617 TYMSOSQ8TAI1 123 aa6.84□□□□□ -1.31
PDPN-211ENST00000617617 TNXBP22105 4242 aa6.84□□□□□ -1.32
PDPN-211ENST00000617617 FAM236AA0A1B0GUQ0 79 aa6.83□□□□□ -1.32
PDPN-211ENST00000617617 FAM236BA0A1B0GV22 79 aa6.83□□□□□ -1.32
PDPN-211ENST00000617617 SPAG11AQ6PDA7 123 aa6.83□□□□□ -1.32
PDPN-211ENST00000617617 UQCRQO14949 82 aa6.83□□□□□ -1.32
PDPN-211ENST00000617617 KRTAP10-8P60410 259 aa6.83□□□□□ -1.32
PDPN-211ENST00000617617 A0A0G2JQZ4 141 aa6.82□□□□□ -1.32
PDPN-211ENST00000617617 PRR26Q8N8Z3 221 aa6.82□□□□□ -1.32
PDPN-211ENST00000617617 UBL5Q9BZL1 73 aa6.81□□□□□ -1.32
PDPN-211ENST00000617617 SPINK1P00995 79 aa6.81□□□□□ -1.32
PDPN-211ENST00000617617 LINC00643Q86TS7 51 aa6.81□□□□□ -1.32
PDPN-211ENST00000617617 OXTP01178 125 aa6.8□□□□□ -1.32
PDPN-211ENST00000617617 ATP5EP2Q5VTU8 51 aa6.8□□□□□ -1.32
PDPN-211ENST00000617617 Q6ZVQ6 151 aa6.8□□□□□ -1.32
PDPN-211ENST00000617617 IMUPQ9GZP8 106 aa6.79□□□□□ -1.32
PDPN-211ENST00000617617 A0A087WSZ3 146 aa6.78□□□□□ -1.32
PDPN-211ENST00000617617 LINC00304Q8N9R0 145 aa6.78□□□□□ -1.32
PDPN-211ENST00000617617 CXCL6P80162 114 aa6.77□□□□□ -1.32
PDPN-211ENST00000617617 LIMD2Q9BT23 127 aa6.77□□□□□ -1.32
PDPN-211ENST00000617617 NREPQ16612 68 aa6.77□□□□□ -1.33
PDPN-211ENST00000617617 LINC00472Q9H8W2 130 aa6.77□□□□□ -1.33
PDPN-211ENST00000617617 C4orf26Q17RF5 130 aa6.77□□□□□ -1.33
PDPN-211ENST00000617617 HRCT1Q6UXD1 115 aa6.76□□□□□ -1.33
PDPN-211ENST00000617617 COX7CP15954 63 aa6.76□□□□□ -1.33
PDPN-211ENST00000617617 Q96NJ1 140 aa6.76□□□□□ -1.33
PDPN-211ENST00000617617 KRTAP29-1A8MX34 341 aaPredicted RBP6.75□□□□□ -1.33
PDPN-211ENST00000617617 C4orf48Q5BLP8 95 aa6.75□□□□□ -1.33
PDPN-211ENST00000617617 KRTAP4-5Q9BYR2 181 aa6.75□□□□□ -1.33
PDPN-211ENST00000617617 MT1HL1P0DM35 61 aa6.74□□□□□ -1.33
PDPN-211ENST00000617617 LRP1Q07954 4544 aaKnown RBP6.72□□□□□ -1.33
PDPN-211ENST00000617617 TMEM258P61165 79 aa6.72□□□□□ -1.33
PDPN-211ENST00000617617 BPY2O14599 106 aa6.7□□□□□ -1.34
PDPN-211ENST00000617617 ATOX1O00244 68 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms