RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SMIM29Q86T20 159 aa8.5□□□□□ -1.05
UPF1-211ENST00000600868 LAMTOR3Q9UHA4 124 aa8.5□□□□□ -1.05
UPF1-211ENST00000600868 PRR26Q8N8Z3 221 aa8.49□□□□□ -1.05
UPF1-211ENST00000600868 KRTAP29-1A8MX34 341 aaPredicted RBP8.48□□□□□ -1.05
UPF1-211ENST00000600868 KRTAP13-2Q52LG2 175 aa8.48□□□□□ -1.05
UPF1-211ENST00000600868 TMEM256-PLSCR3K7ERE1 68 aa8.47□□□□□ -1.05
UPF1-211ENST00000600868 C3orf22Q8N5N4 141 aa8.47□□□□□ -1.05
UPF1-211ENST00000600868 H3BMG7 143 aa8.46□□□□□ -1.06
UPF1-211ENST00000600868 K7EP34 96 aa8.46□□□□□ -1.06
UPF1-211ENST00000600868 BAALC-AS2P0C853 105 aa8.46□□□□□ -1.06
UPF1-211ENST00000600868 KRTAP10-8P60410 259 aa8.46□□□□□ -1.06
UPF1-211ENST00000600868 IGLV9-49A0A0B4J1Y8 123 aa8.45□□□□□ -1.06
UPF1-211ENST00000600868 C9JAW5 83 aa8.45□□□□□ -1.06
UPF1-211ENST00000600868 NDUFV3P56181 108 aaKnown RBP8.44□□□□□ -1.06
UPF1-211ENST00000600868 UBE2V1Q13404 147 aa8.44□□□□□ -1.06
UPF1-211ENST00000600868 GTF2H5Q6ZYL4 71 aa8.44□□□□□ -1.06
UPF1-211ENST00000600868 TYMSOSQ8TAI1 123 aa8.44□□□□□ -1.06
UPF1-211ENST00000600868 F8WEM9 126 aa8.43□□□□□ -1.06
UPF1-211ENST00000600868 MT1HL1P0DM35 61 aa8.43□□□□□ -1.06
UPF1-211ENST00000600868 MOBPQ13875 183 aa8.43□□□□□ -1.06
UPF1-211ENST00000600868 SSBP3-AS1Q7Z2R9 100 aa8.43□□□□□ -1.06
UPF1-211ENST00000600868 LRP1Q07954 4544 aaKnown RBP8.42□□□□□ -1.06
UPF1-211ENST00000600868 FAT3Q8TDW7 4589 aa8.42□□□□□ -1.06
UPF1-211ENST00000600868 IGLV8-61A0A075B6I0 122 aa8.42□□□□□ -1.06
UPF1-211ENST00000600868 C9orf153Q5TBE3 101 aa8.42□□□□□ -1.06
UPF1-211ENST00000600868 Q8NBF4 154 aa8.42□□□□□ -1.06
UPF1-211ENST00000600868 MYCBP2O75592 4640 aa8.42□□□□□ -1.06
UPF1-211ENST00000600868 ABCA13Q86UQ4 5058 aa8.4□□□□□ -1.06
UPF1-211ENST00000600868 H3BT86 120 aa8.4□□□□□ -1.06
UPF1-211ENST00000600868 ANKRD29Q8N6D5 301 aa8.39□□□□□ -1.07
UPF1-211ENST00000600868 Q6JHZ5 121 aa8.38□□□□□ -1.07
UPF1-211ENST00000600868 MTURNQ8N3F0 131 aa8.38□□□□□ -1.07
UPF1-211ENST00000600868 PRO0461Q9UI25 63 aa8.37□□□□□ -1.07
UPF1-211ENST00000600868 A0A1B0GV90 55 aa8.36□□□□□ -1.07
UPF1-211ENST00000600868 J3QL48 77 aa8.36□□□□□ -1.07
UPF1-211ENST00000600868 TNXBP22105 4242 aa8.36□□□□□ -1.07
UPF1-211ENST00000600868 SMCPP49901 116 aaPredicted RBP8.35□□□□□ -1.07
UPF1-211ENST00000600868 LINC00304Q8N9R0 145 aa8.35□□□□□ -1.07
UPF1-211ENST00000600868 RBM3P98179 157 aaKnown RBP8.34□□□□□ -1.07
UPF1-211ENST00000600868 SPAG11AQ6PDA7 123 aa8.34□□□□□ -1.07
UPF1-211ENST00000600868 IGFL1Q6UW32 110 aa8.34□□□□□ -1.07
UPF1-211ENST00000600868 F8W1H4 67 aa8.33□□□□□ -1.08
UPF1-211ENST00000600868 JMJD7-PLA2G4BH0Y9G9 81 aa8.33□□□□□ -1.08
UPF1-211ENST00000600868 OBSCN-AS1Q96MR7 158 aa8.33□□□□□ -1.08
UPF1-211ENST00000600868 CD164Q04900 197 aa8.32□□□□□ -1.08
UPF1-211ENST00000600868 C4orf48Q5BLP8 95 aa8.32□□□□□ -1.08
UPF1-211ENST00000600868 A0A0G2JQZ4 141 aa8.31□□□□□ -1.08
UPF1-211ENST00000600868 A0A1B0GV72 72 aa8.31□□□□□ -1.08
UPF1-211ENST00000600868 TRBV7-4A0A0J9YYF1 115 aa8.3□□□□□ -1.08
UPF1-211ENST00000600868 SPINK1P00995 79 aa8.3□□□□□ -1.08
UPF1-211ENST00000600868 DSCR8Q96T75 97 aa8.3□□□□□ -1.08
UPF1-211ENST00000600868 Q6Q795 121 aa8.28□□□□□ -1.08
UPF1-211ENST00000600868 DMBT1Q9UGM3 2413 aaPredicted RBP8.27□□□□□ -1.09
UPF1-211ENST00000600868 RPS29P62273 56 aaKnown RBP8.27□□□□□ -1.09
UPF1-211ENST00000600868 HRCT1Q6UXD1 115 aa8.27□□□□□ -1.09
UPF1-211ENST00000600868 TEN1Q86WV5 123 aa8.27□□□□□ -1.09
UPF1-211ENST00000600868 PCLOQ9Y6V0 5065 aa8.26□□□□□ -1.09
UPF1-211ENST00000600868 LOC110117498A0A087WWA1 95 aa8.26□□□□□ -1.09
UPF1-211ENST00000600868 PDE6GP18545 87 aa8.26□□□□□ -1.09
UPF1-211ENST00000600868 A0A1W2PNM2 257 aa8.25□□□□□ -1.09
UPF1-211ENST00000600868 C14orf132Q9NPU4 83 aa8.25□□□□□ -1.09
UPF1-211ENST00000600868 TRBV7-7A0A0K0K1E9 115 aa8.24□□□□□ -1.09
UPF1-211ENST00000600868 CCKP06307 115 aa8.24□□□□□ -1.09
UPF1-211ENST00000600868 Q6ZQT0 140 aa8.24□□□□□ -1.09
UPF1-211ENST00000600868 C21orf62-AS1Q17RA5 79 aa8.23□□□□□ -1.09
UPF1-211ENST00000600868 ETDBQ3ZM63 59 aa8.22□□□□□ -1.09
UPF1-211ENST00000600868 Q5XG85 94 aa8.22□□□□□ -1.09
UPF1-211ENST00000600868 LIMD2Q9BT23 127 aa8.22□□□□□ -1.09
UPF1-211ENST00000600868 VPS25Q9BRG1 176 aa8.19□□□□□ -1.1
UPF1-211ENST00000600868 A0A1B0GW54 56 aa8.18□□□□□ -1.1
UPF1-211ENST00000600868 A0A087WSZ3 146 aa8.17□□□□□ -1.1
UPF1-211ENST00000600868 SS18L2Q9UHA2 77 aa8.17□□□□□ -1.1
UPF1-211ENST00000600868 ASB16-AS1Q495Z4 193 aa8.16□□□□□ -1.1
UPF1-211ENST00000600868 C1orf195Q5TG92 126 aa8.11□□□□□ -1.11
UPF1-211ENST00000600868 RETNLBQ9BQ08 111 aa8.11□□□□□ -1.11
UPF1-211ENST00000600868 FP248Q71RG6 208 aaPredicted RBP8.09□□□□□ -1.11
UPF1-211ENST00000600868 Q96NJ1 140 aa8.07□□□□□ -1.12
UPF1-211ENST00000600868 LINC00472Q9H8W2 130 aa8.06□□□□□ -1.12
UPF1-211ENST00000600868 PRR4Q16378 134 aa8.05□□□□□ -1.12
UPF1-211ENST00000600868 NREPQ16612 68 aa8.04□□□□□ -1.12
UPF1-211ENST00000600868 IGLV7-46A0A075B6I9 117 aa8.03□□□□□ -1.12
UPF1-211ENST00000600868 FAM240AA0A1B0GVK7 77 aa8.02□□□□□ -1.13
UPF1-211ENST00000600868 LINC00846Q9NV44 126 aa8.02□□□□□ -1.13
UPF1-211ENST00000600868 ACYP1P07311 99 aa8.01□□□□□ -1.13
UPF1-211ENST00000600868 HERC1Q15751 4861 aa8□□□□□ -1.13
UPF1-211ENST00000600868 J3KT08 172 aa7.99□□□□□ -1.13
UPF1-211ENST00000600868 IGKV4-1P06312 121 aa7.99□□□□□ -1.13
UPF1-211ENST00000600868 DEFB116Q30KQ4 102 aa7.99□□□□□ -1.13
UPF1-211ENST00000600868 Q6ZVQ6 151 aa7.99□□□□□ -1.13
UPF1-211ENST00000600868 UBL5Q9BZL1 73 aa7.99□□□□□ -1.13
UPF1-211ENST00000600868 J3QR89 54 aa7.98□□□□□ -1.13
UPF1-211ENST00000600868 SIGMAR1Q99720 223 aa7.97□□□□□ -1.13
UPF1-211ENST00000600868 TPRXLQ17RH7 258 aa7.96□□□□□ -1.14
UPF1-211ENST00000600868 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
UPF1-211ENST00000600868 BPY2O14599 106 aa7.93□□□□□ -1.14
UPF1-211ENST00000600868 A8MWP4 228 aa7.92□□□□□ -1.14
UPF1-211ENST00000600868 NDUFB1O75438 58 aa7.9□□□□□ -1.14
UPF1-211ENST00000600868 DSCR10P59022 87 aa7.9□□□□□ -1.14
UPF1-211ENST00000600868 A0A1B0GVX0 72 aa7.89□□□□□ -1.15
UPF1-211ENST00000600868 K7ERU9 68 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms