RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 H3BNG1 76 aa9.84□□□□□ -0.83
UPF1-204ENST00000596842 DHRS4-AS1Q9P1J3 65 aa9.84□□□□□ -0.83
UPF1-204ENST00000596842 EPM2AB3EWF7 344 aa9.84□□□□□ -0.83
UPF1-204ENST00000596842 hDV103S1A0JD37 113 aa9.83□□□□□ -0.84
UPF1-204ENST00000596842 MDFIQ99750 246 aa9.83□□□□□ -0.84
UPF1-204ENST00000596842 KTN1-AS1Q86SY8 53 aa9.82□□□□□ -0.84
UPF1-204ENST00000596842 K7EQZ3 153 aa9.81□□□□□ -0.84
UPF1-204ENST00000596842 IGLV1-50A0A075B6I6 118 aa9.81□□□□□ -0.84
UPF1-204ENST00000596842 OCR1Q9BZK8 76 aa9.81□□□□□ -0.84
UPF1-204ENST00000596842 PSCAO43653 123 aa9.81□□□□□ -0.84
UPF1-204ENST00000596842 H3BS24 57 aa9.8□□□□□ -0.84
UPF1-204ENST00000596842 PCOTHQ58A44 107 aa9.8□□□□□ -0.84
UPF1-204ENST00000596842 B9D2Q9BPU9 175 aa9.79□□□□□ -0.84
UPF1-204ENST00000596842 SPAG11AQ6PDA7 123 aa9.79□□□□□ -0.84
UPF1-204ENST00000596842 KRTAP24-1Q3LI83 254 aa9.79□□□□□ -0.84
UPF1-204ENST00000596842 NDUFS5O43920 106 aa9.78□□□□□ -0.84
UPF1-204ENST00000596842 DNAH10OSP0CZ25 163 aa9.78□□□□□ -0.84
UPF1-204ENST00000596842 Q8NBF4 154 aa9.78□□□□□ -0.84
UPF1-204ENST00000596842 IGLV5-48A0A075B6I7 105 aa9.78□□□□□ -0.84
UPF1-204ENST00000596842 REG3GQ6UW15 175 aa9.77□□□□□ -0.85
UPF1-204ENST00000596842 KRTAP7-1Q8IUC3 87 aa9.77□□□□□ -0.85
UPF1-204ENST00000596842 A0A087WSZ3 146 aa9.76□□□□□ -0.85
UPF1-204ENST00000596842 LINC00476Q8WZB0 136 aa9.76□□□□□ -0.85
UPF1-204ENST00000596842 RPL37AP61513 92 aaKnown RBP9.75□□□□□ -0.85
UPF1-204ENST00000596842 COL7A1Q02388 2944 aa9.73□□□□□ -0.85
UPF1-204ENST00000596842 CHTF8P0CG12 524 aa9.73□□□□□ -0.85
UPF1-204ENST00000596842 DSCR10P59022 87 aa9.72□□□□□ -0.85
UPF1-204ENST00000596842 H0Y9J4 135 aa9.72□□□□□ -0.85
UPF1-204ENST00000596842 NDUFB1O75438 58 aa9.72□□□□□ -0.85
UPF1-204ENST00000596842 C16orf90A8MZG2 172 aa9.71□□□□□ -0.85
UPF1-204ENST00000596842 UBE2DNLQ8IWF7 75 aa9.71□□□□□ -0.85
UPF1-204ENST00000596842 KRTAP4-16G5E9R7 235 aaPredicted RBP9.7□□□□□ -0.86
UPF1-204ENST00000596842 PRAC1Q96KF2 57 aa9.7□□□□□ -0.86
UPF1-204ENST00000596842 Q1T7F1 81 aa9.69□□□□□ -0.86
UPF1-204ENST00000596842 IGFL1Q6UW32 110 aa9.69□□□□□ -0.86
UPF1-204ENST00000596842 DNAH3Q8TD57 4116 aa9.68□□□□□ -0.86
UPF1-204ENST00000596842 TLX1NBP0CAT3 122 aa9.68□□□□□ -0.86
UPF1-204ENST00000596842 LIMD2Q9BT23 127 aa9.68□□□□□ -0.86
UPF1-204ENST00000596842 DNAH1Q9P2D7 4330 aa9.68□□□□□ -0.86
UPF1-204ENST00000596842 H0Y9P7 68 aa9.67□□□□□ -0.86
UPF1-204ENST00000596842 TNP2Q05952 138 aa9.67□□□□□ -0.86
UPF1-204ENST00000596842 PHF5AQ7RTV0 110 aaKnown RBP9.66□□□□□ -0.86
UPF1-204ENST00000596842 SPRR1AP35321 89 aa9.66□□□□□ -0.86
UPF1-204ENST00000596842 Q5VV11 94 aa9.64□□□□□ -0.87
UPF1-204ENST00000596842 LYSTQ99698 3801 aa9.63□□□□□ -0.87
UPF1-204ENST00000596842 KRTAP1-5Q9BYS1 174 aa9.63□□□□□ -0.87
UPF1-204ENST00000596842 PLA2G2DQ9UNK4 145 aa9.63□□□□□ -0.87
UPF1-204ENST00000596842 SPRR4Q96PI1 79 aa9.62□□□□□ -0.87
UPF1-204ENST00000596842 ATP11AUNQ6ZP68 121 aa9.62□□□□□ -0.87
UPF1-204ENST00000596842 DNAH10Q8IVF4 4471 aa9.62□□□□□ -0.87
UPF1-204ENST00000596842 IGLV5-37A0A075B6J1 123 aa9.59□□□□□ -0.87
UPF1-204ENST00000596842 C7orf65Q6ZTY9 151 aa9.59□□□□□ -0.87
UPF1-204ENST00000596842 K7EIL1 84 aa9.58□□□□□ -0.88
UPF1-204ENST00000596842 KRTAP11-1Q8IUC1 163 aa9.57□□□□□ -0.88
UPF1-204ENST00000596842 CASC2Q6XLA1 102 aa9.57□□□□□ -0.88
UPF1-204ENST00000596842 IGLV9-49A0A0B4J1Y8 123 aa9.56□□□□□ -0.88
UPF1-204ENST00000596842 C8orf87E5RJ46 101 aa9.54□□□□□ -0.88
UPF1-204ENST00000596842 COA5Q86WW8 74 aa9.54□□□□□ -0.88
UPF1-204ENST00000596842 Q8N9P0 234 aaPredicted RBP9.54□□□□□ -0.88
UPF1-204ENST00000596842 LCA10Q71F78 164 aa9.54□□□□□ -0.88
UPF1-204ENST00000596842 A0A1B0GW54 56 aa9.54□□□□□ -0.88
UPF1-204ENST00000596842 LOC101927531A0A1B0GV80 90 aa9.52□□□□□ -0.89
UPF1-204ENST00000596842 CDK2AP2O75956 126 aa9.47□□□□□ -0.89
UPF1-204ENST00000596842 FLG2Q5D862 2391 aaPredicted RBP9.46□□□□□ -0.89
UPF1-204ENST00000596842 ZCCHC13Q8WW36 166 aaKnown RBP9.46□□□□□ -0.9
UPF1-204ENST00000596842 PANO1I0J062 215 aa9.45□□□□□ -0.9
UPF1-204ENST00000596842 LINC00313P59037 77 aa9.45□□□□□ -0.9
UPF1-204ENST00000596842 CYP4F30PQ9H0H9 118 aa9.45□□□□□ -0.9
UPF1-204ENST00000596842 HUWE1Q7Z6Z7 4374 aaKnown RBP9.44□□□□□ -0.9
UPF1-204ENST00000596842 MOBPQ13875 183 aa9.44□□□□□ -0.9
UPF1-204ENST00000596842 ADM2Q7Z4H4 148 aa9.44□□□□□ -0.9
UPF1-204ENST00000596842 ANAPC11Q9NYG5 84 aa9.44□□□□□ -0.9
UPF1-204ENST00000596842 SPINK7P58062 85 aa9.43□□□□□ -0.9
UPF1-204ENST00000596842 CNBPP62633 177 aaKnown RBP9.43□□□□□ -0.9
UPF1-204ENST00000596842 IGLV8-61A0A075B6I0 122 aa9.43□□□□□ -0.9
UPF1-204ENST00000596842 CDC42SE1Q9NRR8 79 aa9.43□□□□□ -0.9
UPF1-204ENST00000596842 RETNLBQ9BQ08 111 aa9.42□□□□□ -0.9
UPF1-204ENST00000596842 LCE6AA0A183 80 aa9.42□□□□□ -0.9
UPF1-204ENST00000596842 DMBT1Q9UGM3 2413 aaPredicted RBP9.41□□□□□ -0.9
UPF1-204ENST00000596842 A8MWP4 228 aa9.4□□□□□ -0.9
UPF1-204ENST00000596842 C14orf177Q52M58 125 aa9.39□□□□□ -0.91
UPF1-204ENST00000596842 IGHV6-1A0A0B4J1U7 121 aa9.39□□□□□ -0.91
UPF1-204ENST00000596842 DNAH9Q9NYC9 4486 aa9.38□□□□□ -0.91
UPF1-204ENST00000596842 SPINK6Q6UWN8 80 aa9.38□□□□□ -0.91
UPF1-204ENST00000596842 PRR26Q8N8Z3 221 aa9.38□□□□□ -0.91
UPF1-204ENST00000596842 LINC01554Q52M75 96 aa9.37□□□□□ -0.91
UPF1-204ENST00000596842 ZNF706Q9Y5V0 76 aaPredicted RBP9.37□□□□□ -0.91
UPF1-204ENST00000596842 C9orf163Q8N9P6 203 aa9.36□□□□□ -0.91
UPF1-204ENST00000596842 TGP01266 2768 aa9.36□□□□□ -0.91
UPF1-204ENST00000596842 KRTAP29-1A8MX34 341 aaPredicted RBP9.35□□□□□ -0.91
UPF1-204ENST00000596842 LINC00472Q9H8W2 130 aa9.35□□□□□ -0.91
UPF1-204ENST00000596842 APLNQ9ULZ1 77 aa9.35□□□□□ -0.91
UPF1-204ENST00000596842 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.35□□□□□ -0.91
UPF1-204ENST00000596842 Q75L30 129 aa9.33□□□□□ -0.92
UPF1-204ENST00000596842 A6NN06 94 aa9.32□□□□□ -0.92
UPF1-204ENST00000596842 NBDYA0A0U1RRE5 68 aa9.32□□□□□ -0.92
UPF1-204ENST00000596842 DNAH7Q8WXX0 4024 aa9.31□□□□□ -0.92
UPF1-204ENST00000596842 MMP24-AS1A0A0U1RRL7 71 aa9.29□□□□□ -0.92
UPF1-204ENST00000596842 SPRR1BP22528 89 aa9.25□□□□□ -0.93
UPF1-204ENST00000596842 A0A1B0GU69 56 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms