RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 OCIAD2Q56VL3 154 aa5.86□□□□□ -1.47
LIG3-212ENST00000590181 Q6JHZ5 121 aa5.86□□□□□ -1.47
LIG3-212ENST00000590181 TCL1BO95988 128 aa5.85□□□□□ -1.47
LIG3-212ENST00000590181 LINC01547P58512 204 aaPredicted RBP5.85□□□□□ -1.47
LIG3-212ENST00000590181 Q1RN00 199 aa5.85□□□□□ -1.47
LIG3-212ENST00000590181 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.85□□□□□ -1.47
LIG3-212ENST00000590181 SMIM29Q86T20 159 aa5.85□□□□□ -1.47
LIG3-212ENST00000590181 H0YGX0 51 aa5.84□□□□□ -1.47
LIG3-212ENST00000590181 XP32Q5T750 250 aa5.84□□□□□ -1.47
LIG3-212ENST00000590181 IGLV8-61A0A075B6I0 122 aa5.83□□□□□ -1.48
LIG3-212ENST00000590181 TMEM238LA0A1B0GVL6 79 aa5.82□□□□□ -1.48
LIG3-212ENST00000590181 A6NJY4 79 aa5.82□□□□□ -1.48
LIG3-212ENST00000590181 VAMP8Q9BV40 100 aa5.82□□□□□ -1.48
LIG3-212ENST00000590181 A0A0B4J2C4 111 aa5.81□□□□□ -1.48
LIG3-212ENST00000590181 RAB37Q96AX2 223 aa5.81□□□□□ -1.48
LIG3-212ENST00000590181 C12orf57Q99622 126 aa5.81□□□□□ -1.48
LIG3-212ENST00000590181 A0A1B0GX51 115 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 H3BQ85 93 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 SPATA45Q537H7 98 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 HRCT1Q6UXD1 115 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 Q6ZQY7 126 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 SNHG12Q9BXW3 62 aa5.8□□□□□ -1.48
LIG3-212ENST00000590181 CLEC2BQ92478 149 aa5.79□□□□□ -1.48
LIG3-212ENST00000590181 CFC1BP0CG36 223 aa5.78□□□□□ -1.48
LIG3-212ENST00000590181 CFC1P0CG37 223 aa5.78□□□□□ -1.48
LIG3-212ENST00000590181 C1orf195Q5TG92 126 aa5.77□□□□□ -1.49
LIG3-212ENST00000590181 C14orf144Q96I85 54 aa5.77□□□□□ -1.49
LIG3-212ENST00000590181 PAM16Q9Y3D7 125 aa5.77□□□□□ -1.49
LIG3-212ENST00000590181 CEND1Q8N111 149 aa5.76□□□□□ -1.49
LIG3-212ENST00000590181 PRO1854Q9UHT4 67 aa5.76□□□□□ -1.49
LIG3-212ENST00000590181 KRTAP4-1Q9BYQ7 146 aa5.75□□□□□ -1.49
LIG3-212ENST00000590181 TRBV7-7A0A0K0K1E9 115 aa5.74□□□□□ -1.49
LIG3-212ENST00000590181 Q6Q795 121 aa5.74□□□□□ -1.49
LIG3-212ENST00000590181 SS18L2Q9UHA2 77 aa5.74□□□□□ -1.49
LIG3-212ENST00000590181 COX6CP09669 75 aa5.73□□□□□ -1.49
LIG3-212ENST00000590181 IGFL1Q6UW32 110 aa5.72□□□□□ -1.49
LIG3-212ENST00000590181 C2orf91Q6ZV80 131 aa5.72□□□□□ -1.49
LIG3-212ENST00000590181 TEN1Q86WV5 123 aa5.71□□□□□ -1.5
LIG3-212ENST00000590181 NDUFV3P56181 108 aaKnown RBP5.7□□□□□ -1.5
LIG3-212ENST00000590181 HSD52Q0P140 79 aa5.7□□□□□ -1.5
LIG3-212ENST00000590181 LST1O00453 97 aa5.69□□□□□ -1.5
LIG3-212ENST00000590181 C9orf92A6NGG3 77 aa5.68□□□□□ -1.5
LIG3-212ENST00000590181 DNAL4O96015 105 aa5.68□□□□□ -1.5
LIG3-212ENST00000590181 UQCR10Q9UDW1 63 aa5.68□□□□□ -1.5
LIG3-212ENST00000590181 TMEM256-PLSCR3K7ERE1 68 aa5.67□□□□□ -1.5
LIG3-212ENST00000590181 PYY3Q5JQD4 70 aa5.67□□□□□ -1.5
LIG3-212ENST00000590181 A0A0G2JQZ4 141 aa5.66□□□□□ -1.5
LIG3-212ENST00000590181 H3BMG7 143 aa5.66□□□□□ -1.5
LIG3-212ENST00000590181 RPL37P61927 97 aaKnown RBP5.66□□□□□ -1.5
LIG3-212ENST00000590181 PCOTHQ58A44 107 aa5.66□□□□□ -1.5
LIG3-212ENST00000590181 FXYD2P54710 66 aa5.65□□□□□ -1.5
LIG3-212ENST00000590181 C21orf62-AS1Q17RA5 79 aa5.65□□□□□ -1.5
LIG3-212ENST00000590181 LCE2CQ5TA81 110 aa5.65□□□□□ -1.5
LIG3-212ENST00000590181 ORMDL1Q9P0S3 153 aa5.65□□□□□ -1.5
LIG3-212ENST00000590181 TRIAP1O43715 76 aa5.64□□□□□ -1.51
LIG3-212ENST00000590181 FABP2P12104 132 aa5.64□□□□□ -1.51
LIG3-212ENST00000590181 PSMB2P49721 201 aa5.64□□□□□ -1.51
LIG3-212ENST00000590181 FAM218AQ96MZ4 157 aa5.64□□□□□ -1.51
LIG3-212ENST00000590181 TMA7Q9Y2S6 64 aaKnown RBP5.64□□□□□ -1.51
LIG3-212ENST00000590181 TRBV7-4A0A0J9YYF1 115 aa5.63□□□□□ -1.51
LIG3-212ENST00000590181 H3BUT2 72 aa5.63□□□□□ -1.51
LIG3-212ENST00000590181 MT1HP80294 61 aa5.63□□□□□ -1.51
LIG3-212ENST00000590181 ATP11AUNQ6ZP68 121 aa5.63□□□□□ -1.51
LIG3-212ENST00000590181 Q75L30 129 aa5.63□□□□□ -1.51
LIG3-212ENST00000590181 TRACP01848 142 aa5.62□□□□□ -1.51
LIG3-212ENST00000590181 UBE2V1Q13404 147 aa5.62□□□□□ -1.51
LIG3-212ENST00000590181 ANKRD29Q8N6D5 301 aa5.62□□□□□ -1.51
LIG3-212ENST00000590181 KRTAP19-2Q3LHN2 52 aa5.61□□□□□ -1.51
LIG3-212ENST00000590181 LCE2BO14633 110 aa5.6□□□□□ -1.51
LIG3-212ENST00000590181 A0A087WSZ3 146 aa5.58□□□□□ -1.52
LIG3-212ENST00000590181 SCGB1C2P0DMR2 95 aa5.58□□□□□ -1.52
LIG3-212ENST00000590181 LORP23490 312 aaPredicted RBP5.58□□□□□ -1.52
LIG3-212ENST00000590181 OBSCN-AS1Q96MR7 158 aa5.58□□□□□ -1.52
LIG3-212ENST00000590181 KRTAP10-6P60371 365 aaPredicted RBP5.57□□□□□ -1.52
LIG3-212ENST00000590181 A0A1B0GW54 56 aa5.56□□□□□ -1.52
LIG3-212ENST00000590181 M0R143 59 aa5.56□□□□□ -1.52
LIG3-212ENST00000590181 Q96NJ1 140 aa5.56□□□□□ -1.52
LIG3-212ENST00000590181 C20orf166-AS1Q96NR2 134 aa5.56□□□□□ -1.52
LIG3-212ENST00000590181 FLGP20930 4061 aaPredicted RBP5.56□□□□□ -1.52
LIG3-212ENST00000590181 RBM3P98179 157 aaKnown RBP5.55□□□□□ -1.52
LIG3-212ENST00000590181 DSCR8Q96T75 97 aa5.55□□□□□ -1.52
LIG3-212ENST00000590181 A0A1W2PNM2 257 aa5.54□□□□□ -1.52
LIG3-212ENST00000590181 CCKP06307 115 aa5.54□□□□□ -1.52
LIG3-212ENST00000590181 A8MUU9 505 aa5.53□□□□□ -1.52
LIG3-212ENST00000590181 K7ERJ3 54 aa5.53□□□□□ -1.52
LIG3-212ENST00000590181 KRTAP9-7A8MTY7 169 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 SMIM6P0DI80 62 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 PDE6GP18545 87 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 LINC00313P59037 77 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 LYRM7Q5U5X0 104 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 COX6B2Q6YFQ2 88 aa5.52□□□□□ -1.53
LIG3-212ENST00000590181 JMJD7-PLA2G4BH0Y9G9 81 aa5.51□□□□□ -1.53
LIG3-212ENST00000590181 J3KT08 172 aa5.51□□□□□ -1.53
LIG3-212ENST00000590181 M0R2T5 61 aa5.51□□□□□ -1.53
LIG3-212ENST00000590181 IGKV4-1P06312 121 aa5.51□□□□□ -1.53
LIG3-212ENST00000590181 BAALC-AS2P0C853 105 aa5.51□□□□□ -1.53
LIG3-212ENST00000590181 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
LIG3-212ENST00000590181 C9JAW5 83 aa5.5□□□□□ -1.53
LIG3-212ENST00000590181 ATXN8Q156A1 80 aa5.5□□□□□ -1.53
LIG3-212ENST00000590181 SIGMAR1Q99720 223 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms