RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 COX7CP15954 63 aa4.87□□□□□ -1.63
SMAD4-209ENST00000589941 Q8IZM0 81 aa4.87□□□□□ -1.63
SMAD4-209ENST00000589941 IGLV4-60A0A075B6I1 120 aa4.86□□□□□ -1.63
SMAD4-209ENST00000589941 A0A0U1RRA0 63 aa4.86□□□□□ -1.63
SMAD4-209ENST00000589941 NDUFC2O95298 119 aa4.86□□□□□ -1.63
SMAD4-209ENST00000589941 SS18Q15532 418 aa4.86□□□□□ -1.63
SMAD4-209ENST00000589941 LOC100131303A0A0U1RQF7 123 aa4.85□□□□□ -1.63
SMAD4-209ENST00000589941 LINC00959A0A1B0GUT2 108 aa4.85□□□□□ -1.63
SMAD4-209ENST00000589941 KRTAP10-8P60410 259 aa4.85□□□□□ -1.63
SMAD4-209ENST00000589941 ATP5EP2Q5VTU8 51 aa4.85□□□□□ -1.63
SMAD4-209ENST00000589941 DNAL4O96015 105 aa4.84□□□□□ -1.63
SMAD4-209ENST00000589941 LINC00158P58513 81 aa4.84□□□□□ -1.63
SMAD4-209ENST00000589941 RPS28P62857 69 aaKnown RBP4.84□□□□□ -1.63
SMAD4-209ENST00000589941 RPL18AQ02543 176 aaKnown RBP4.84□□□□□ -1.63
SMAD4-209ENST00000589941 COX17Q14061 63 aa4.84□□□□□ -1.63
SMAD4-209ENST00000589941 C9orf129Q5T035 196 aaKnown RBP4.84□□□□□ -1.63
SMAD4-209ENST00000589941 C9orf153Q5TBE3 101 aa4.84□□□□□ -1.63
SMAD4-209ENST00000589941 SMIM20Q8N5G0 67 aa4.84□□□□□ -1.63
SMAD4-209ENST00000589941 TRGV2A0A075B6R0 118 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 TRGV4A0A0C4DH28 118 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 CCKP06307 115 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 KIAA0087Q14695 138 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 LINC00846Q9NV44 126 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 ORMDL1Q9P0S3 153 aa4.83□□□□□ -1.64
SMAD4-209ENST00000589941 TRBV10-3A0A0K0K1G6 114 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 JMJD7-PLA2G4BH0Y9G9 81 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 BCE1O60756 84 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 LINC01556Q5JQF7 62 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 S100A7L2Q5SY68 101 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 C14orf132Q9NPU4 83 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 MUC17Q685J3 4493 aa4.82□□□□□ -1.64
SMAD4-209ENST00000589941 SERP2Q8N6R1 65 aa4.81□□□□□ -1.64
SMAD4-209ENST00000589941 TOMM7Q9P0U1 55 aa4.81□□□□□ -1.64
SMAD4-209ENST00000589941 CD164L2Q6UWJ8 174 aa4.8□□□□□ -1.64
SMAD4-209ENST00000589941 PRO0255Q9UI72 69 aa4.8□□□□□ -1.64
SMAD4-209ENST00000589941 LOC110117498A0A087WWA1 95 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 H3BQ85 93 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 J3KT08 172 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 TMEM256-PLSCR3K7ERE1 68 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 TMEM258P61165 79 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 C6orf226Q5I0X4 101 aa4.79□□□□□ -1.64
SMAD4-209ENST00000589941 NDUFC2-KCTD14E9PQ53 114 aa4.78□□□□□ -1.64
SMAD4-209ENST00000589941 NCR3O14931 201 aa4.78□□□□□ -1.64
SMAD4-209ENST00000589941 PFN2P35080 140 aa4.78□□□□□ -1.64
SMAD4-209ENST00000589941 KRTAP10-12P60413 245 aa4.78□□□□□ -1.64
SMAD4-209ENST00000589941 GVQW2A0A096LPI5 108 aaPredicted RBP4.77□□□□□ -1.65
SMAD4-209ENST00000589941 hADV29S1A0JD25 119 aa4.77□□□□□ -1.65
SMAD4-209ENST00000589941 KRTAP16-1A8MUX0 517 aa4.77□□□□□ -1.65
SMAD4-209ENST00000589941 LINC00575Q6W349 94 aa4.77□□□□□ -1.65
SMAD4-209ENST00000589941 OR13C6PQ8NH95 151 aa4.77□□□□□ -1.65
SMAD4-209ENST00000589941 IGKV3D-7A0A0C4DH55 119 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 IGKV3OR2-268A0A0C4DH90 116 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 IGLV6-57P01721 117 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 XCL1P47992 114 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 Q6ZQT0 140 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 Q8NDZ9 215 aa4.76□□□□□ -1.65
SMAD4-209ENST00000589941 PDE6GP18545 87 aa4.75□□□□□ -1.65
SMAD4-209ENST00000589941 SEC61GP60059 68 aa4.75□□□□□ -1.65
SMAD4-209ENST00000589941 CHCHD10Q8WYQ3 142 aaPredicted RBP4.75□□□□□ -1.65
SMAD4-209ENST00000589941 CYSTM1Q9H1C7 97 aa4.75□□□□□ -1.65
SMAD4-209ENST00000589941 PRR34Q9NV39 138 aa4.75□□□□□ -1.65
SMAD4-209ENST00000589941 TRBV7-6A0A0J9YX20 115 aa4.74□□□□□ -1.65
SMAD4-209ENST00000589941 PRR3P79522 188 aaKnown RBP4.74□□□□□ -1.65
SMAD4-209ENST00000589941 A0A087WVE0 104 aa4.73□□□□□ -1.65
SMAD4-209ENST00000589941 CHTF8P0CG12 524 aa4.73□□□□□ -1.65
SMAD4-209ENST00000589941 KRTAP10-5P60370 271 aa4.73□□□□□ -1.65
SMAD4-209ENST00000589941 C6orf99Q4VX62 202 aa4.73□□□□□ -1.65
SMAD4-209ENST00000589941 DPH3Q96FX2 82 aa4.73□□□□□ -1.65
SMAD4-209ENST00000589941 NDUFAF8A1L188 74 aa4.72□□□□□ -1.65
SMAD4-209ENST00000589941 CXCL6P80162 114 aa4.72□□□□□ -1.65
SMAD4-209ENST00000589941 REG3AQ06141 175 aa4.72□□□□□ -1.65
SMAD4-209ENST00000589941 LINC00269Q8N2A0 174 aa4.72□□□□□ -1.65
SMAD4-209ENST00000589941 UBL5Q9BZL1 73 aa4.72□□□□□ -1.65
SMAD4-209ENST00000589941 TRAV7A0A075B6U4 112 aa4.71□□□□□ -1.66
SMAD4-209ENST00000589941 LOC107984640A0A0U1RRK4 108 aa4.71□□□□□ -1.66
SMAD4-209ENST00000589941 RBM3P98179 157 aaKnown RBP4.71□□□□□ -1.66
SMAD4-209ENST00000589941 SPAG11BQ08648 103 aa4.71□□□□□ -1.66
SMAD4-209ENST00000589941 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-209ENST00000589941 Q6ZRP5 223 aa4.71□□□□□ -1.66
SMAD4-209ENST00000589941 FAM19A5Q7Z5A7 132 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-209ENST00000589941 IGKV2D-24A0A075B6R9 120 aa4.7□□□□□ -1.66
SMAD4-209ENST00000589941 TRBV7-4A0A0J9YYF1 115 aa4.7□□□□□ -1.66
SMAD4-209ENST00000589941 PRR4Q16378 134 aa4.7□□□□□ -1.66
SMAD4-209ENST00000589941 FAM19A1Q7Z5A9 133 aa4.7□□□□□ -1.66
SMAD4-209ENST00000589941 ANGP03950 147 aaKnown RBP4.69□□□□□ -1.66
SMAD4-209ENST00000589941 KLKP1Q107X0 134 aa4.69□□□□□ -1.66
SMAD4-209ENST00000589941 C9orf116Q5BN46 136 aaPredicted RBP4.69□□□□□ -1.66
SMAD4-209ENST00000589941 REG3GQ6UW15 175 aa4.69□□□□□ -1.66
SMAD4-209ENST00000589941 CLPSL2Q6UWE3 100 aa4.69□□□□□ -1.66
SMAD4-209ENST00000589941 ENHOQ6UWT2 76 aa4.69□□□□□ -1.66
SMAD4-209ENST00000589941 UNQ6190/PRO20217Q6UXQ8 127 aa4.69□□□□□ -1.66
SMAD4-209ENST00000589941 IGLV7-46A0A075B6I9 117 aa4.68□□□□□ -1.66
SMAD4-209ENST00000589941 ELOF1P60002 83 aaKnown RBP4.68□□□□□ -1.66
SMAD4-209ENST00000589941 KRTAP26-1Q6PEX3 210 aa4.68□□□□□ -1.66
SMAD4-209ENST00000589941 Q6ZVQ6 151 aa4.68□□□□□ -1.66
SMAD4-209ENST00000589941 C9orf163Q8N9P6 203 aa4.68□□□□□ -1.66
SMAD4-209ENST00000589941 DIRC1Q969H9 104 aa4.68□□□□□ -1.66
SMAD4-209ENST00000589941 TRAV23DV6A0A075B6W5 121 aa4.67□□□□□ -1.66
SMAD4-209ENST00000589941 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-209ENST00000589941 SPACA4Q8TDM5 124 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms