RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 LAMTOR3Q9UHA4 124 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 Q8N377 158 aa6.5□□□□□ -1.37
SS18-217ENST00000580958 HIGD2AQ9BW72 106 aa6.5□□□□□ -1.37
SS18-217ENST00000580958 JMJD7-PLA2G4BH0Y9G9 81 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 H0Y9J4 135 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 Q6ZSA8 131 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 CIRBP-AS1Q8TBR5 109 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 PSORS1C2Q9UIG4 136 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 PKHD1P08F94 4074 aa6.49□□□□□ -1.37
SS18-217ENST00000580958 IGLV5-48A0A075B6I7 105 aa6.48□□□□□ -1.37
SS18-217ENST00000580958 NDUFV3P56181 108 aaKnown RBP6.48□□□□□ -1.37
SS18-217ENST00000580958 HAMPP81172 84 aa6.48□□□□□ -1.37
SS18-217ENST00000580958 SCXQ7RTU7 201 aa6.48□□□□□ -1.37
SS18-217ENST00000580958 KRTAP13-1Q8IUC0 172 aa6.48□□□□□ -1.37
SS18-217ENST00000580958 VPS25Q9BRG1 176 aa6.48□□□□□ -1.37
SS18-217ENST00000580958 A0A1B0GVY2 172 aa6.47□□□□□ -1.37
SS18-217ENST00000580958 RBM3P98179 157 aaKnown RBP6.47□□□□□ -1.37
SS18-217ENST00000580958 C1orf137Q5JT78 98 aa6.47□□□□□ -1.37
SS18-217ENST00000580958 GAGE2AQ6NT46 116 aa6.46□□□□□ -1.38
SS18-217ENST00000580958 APOBP04114 4563 aaKnown RBP6.46□□□□□ -1.38
SS18-217ENST00000580958 C3orf22Q8N5N4 141 aa6.45□□□□□ -1.38
SS18-217ENST00000580958 CDIP1Q9H305 208 aa6.45□□□□□ -1.38
SS18-217ENST00000580958 FAM240AA0A1B0GVK7 77 aa6.44□□□□□ -1.38
SS18-217ENST00000580958 CCKP06307 115 aa6.44□□□□□ -1.38
SS18-217ENST00000580958 RYR3Q15413 4870 aa6.43□□□□□ -1.38
SS18-217ENST00000580958 LOC110117498A0A087WWA1 95 aa6.43□□□□□ -1.38
SS18-217ENST00000580958 Q6ZQT0 140 aa6.43□□□□□ -1.38
SS18-217ENST00000580958 SMIM29Q86T20 159 aa6.43□□□□□ -1.38
SS18-217ENST00000580958 DSCR8Q96T75 97 aa6.43□□□□□ -1.38
SS18-217ENST00000580958 ACYP1P07311 99 aa6.42□□□□□ -1.38
SS18-217ENST00000580958 KRTAP4-11Q9BYQ6 195 aa6.42□□□□□ -1.38
SS18-217ENST00000580958 SRRM2Q9UQ35 2752 aaKnown RBP6.42□□□□□ -1.38
SS18-217ENST00000580958 VPS13BQ7Z7G8 4022 aa6.42□□□□□ -1.38
SS18-217ENST00000580958 TRBV7-4A0A0J9YYF1 115 aa6.41□□□□□ -1.38
SS18-217ENST00000580958 ZNF861PO60384 105 aa6.41□□□□□ -1.38
SS18-217ENST00000580958 IGLV7-43P04211 117 aa6.41□□□□□ -1.38
SS18-217ENST00000580958 KRTAP9-7A8MTY7 169 aa6.4□□□□□ -1.38
SS18-217ENST00000580958 PDE6GP18545 87 aa6.4□□□□□ -1.38
SS18-217ENST00000580958 SPRR1BP22528 89 aa6.4□□□□□ -1.38
SS18-217ENST00000580958 F8WEM9 126 aa6.39□□□□□ -1.39
SS18-217ENST00000580958 SPRR4Q96PI1 79 aa6.39□□□□□ -1.39
SS18-217ENST00000580958 PKHD1L1Q86WI1 4243 aa6.37□□□□□ -1.39
SS18-217ENST00000580958 XGP55808 180 aa6.37□□□□□ -1.39
SS18-217ENST00000580958 LINC00846Q9NV44 126 aa6.37□□□□□ -1.39
SS18-217ENST00000580958 ZNF706Q9Y5V0 76 aaPredicted RBP6.37□□□□□ -1.39
SS18-217ENST00000580958 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
SS18-217ENST00000580958 SIGMAR1Q99720 223 aa6.36□□□□□ -1.39
SS18-217ENST00000580958 IGLV8-61A0A075B6I0 122 aa6.35□□□□□ -1.39
SS18-217ENST00000580958 C21orf62-AS1Q17RA5 79 aa6.35□□□□□ -1.39
SS18-217ENST00000580958 LINC00483Q53H64 154 aa6.35□□□□□ -1.39
SS18-217ENST00000580958 A0A0G2JQZ4 141 aa6.34□□□□□ -1.39
SS18-217ENST00000580958 A0A1W2PNM2 257 aa6.34□□□□□ -1.39
SS18-217ENST00000580958 IGFL1Q6UW32 110 aa6.33□□□□□ -1.4
SS18-217ENST00000580958 LINC00643Q86TS7 51 aa6.33□□□□□ -1.4
SS18-217ENST00000580958 Q8NBF4 154 aa6.33□□□□□ -1.4
SS18-217ENST00000580958 LCE5AQ5TCM9 118 aa6.32□□□□□ -1.4
SS18-217ENST00000580958 ANAPC11Q9NYG5 84 aa6.32□□□□□ -1.4
SS18-217ENST00000580958 FAT1Q14517 4588 aa6.32□□□□□ -1.4
SS18-217ENST00000580958 IGLV9-49A0A0B4J1Y8 123 aa6.31□□□□□ -1.4
SS18-217ENST00000580958 SMR3BP02814 79 aaPredicted RBP6.31□□□□□ -1.4
SS18-217ENST00000580958 RPL37AP61513 92 aaKnown RBP6.31□□□□□ -1.4
SS18-217ENST00000580958 C9orf153Q5TBE3 101 aa6.31□□□□□ -1.4
SS18-217ENST00000580958 Q6JHZ5 121 aa6.31□□□□□ -1.4
SS18-217ENST00000580958 KRTAP4-5Q9BYR2 181 aa6.31□□□□□ -1.4
SS18-217ENST00000580958 UBL5Q9BZL1 73 aa6.3□□□□□ -1.4
SS18-217ENST00000580958 IGKV3D-7A0A0C4DH55 119 aa6.29□□□□□ -1.4
SS18-217ENST00000580958 Q6ZVQ6 151 aa6.29□□□□□ -1.4
SS18-217ENST00000580958 RYR1P21817 5038 aa6.27□□□□□ -1.41
SS18-217ENST00000580958 CRYGAP11844 174 aa6.27□□□□□ -1.41
SS18-217ENST00000580958 MOBPQ13875 183 aa6.27□□□□□ -1.41
SS18-217ENST00000580958 HSPG2P98160 4391 aa6.26□□□□□ -1.41
SS18-217ENST00000580958 A0A1B0GW54 56 aa6.26□□□□□ -1.41
SS18-217ENST00000580958 TRBV7-7A0A0K0K1E9 115 aa6.25□□□□□ -1.41
SS18-217ENST00000580958 NREPQ16612 68 aa6.24□□□□□ -1.41
SS18-217ENST00000580958 ATP5EP2Q5VTU8 51 aa6.24□□□□□ -1.41
SS18-217ENST00000580958 A0A087WSZ3 146 aa6.23□□□□□ -1.41
SS18-217ENST00000580958 FAM229BQ4G0N7 80 aa6.23□□□□□ -1.41
SS18-217ENST00000580958 Q6Q795 121 aa6.23□□□□□ -1.41
SS18-217ENST00000580958 KRTAP1-4P0C5Y4 121 aa6.22□□□□□ -1.41
SS18-217ENST00000580958 KRTAP10-4P60372 401 aaPredicted RBP6.22□□□□□ -1.41
SS18-217ENST00000580958 SPINK6Q6UWN8 80 aa6.22□□□□□ -1.41
SS18-217ENST00000580958 HRCT1Q6UXD1 115 aa6.22□□□□□ -1.41
SS18-217ENST00000580958 KRTAP9-3Q9BYQ3 159 aa6.22□□□□□ -1.41
SS18-217ENST00000580958 A0A087X002 238 aa6.21□□□□□ -1.42
SS18-217ENST00000580958 KRTAP13-2Q52LG2 175 aa6.21□□□□□ -1.42
SS18-217ENST00000580958 IMUPQ9GZP8 106 aa6.21□□□□□ -1.42
SS18-217ENST00000580958 SCGB1A1P11684 91 aa6.2□□□□□ -1.42
SS18-217ENST00000580958 CXCL6P80162 114 aa6.2□□□□□ -1.42
SS18-217ENST00000580958 EPPK1P58107 5090 aaKnown RBP6.2□□□□□ -1.42
SS18-217ENST00000580958 SSBP3-AS1Q7Z2R9 100 aa6.19□□□□□ -1.42
SS18-217ENST00000580958 BPY2O14599 106 aa6.18□□□□□ -1.42
SS18-217ENST00000580958 CDK2AP2O75956 126 aa6.18□□□□□ -1.42
SS18-217ENST00000580958 HIST1H4AP62805 103 aaKnown RBP6.18□□□□□ -1.42
SS18-217ENST00000580958 A0A087WVE0 104 aa6.17□□□□□ -1.42
SS18-217ENST00000580958 PLA2G1BP04054 148 aaKnown RBP6.17□□□□□ -1.42
SS18-217ENST00000580958 DEFB116Q30KQ4 102 aa6.15□□□□□ -1.42
SS18-217ENST00000580958 Q8N9L7 120 aa6.15□□□□□ -1.42
SS18-217ENST00000580958 FAM236AA0A1B0GUQ0 79 aa6.14□□□□□ -1.43
SS18-217ENST00000580958 FAM236BA0A1B0GV22 79 aa6.14□□□□□ -1.43
SS18-217ENST00000580958 CD164Q04900 197 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 179.4 ms