RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FAM229BQ4G0N7 80 aa6.43□□□□□ -1.38
SS18-213ENST00000579640 LAMTOR3Q9UHA4 124 aa6.43□□□□□ -1.38
SS18-213ENST00000579640 PKHD1L1Q86WI1 4243 aa6.43□□□□□ -1.38
SS18-213ENST00000579640 F8W1H4 67 aa6.42□□□□□ -1.38
SS18-213ENST00000579640 KRTAP1-4P0C5Y4 121 aa6.42□□□□□ -1.38
SS18-213ENST00000579640 ANKRD29Q8N6D5 301 aa6.42□□□□□ -1.38
SS18-213ENST00000579640 LINC01600Q96MT4 127 aa6.42□□□□□ -1.38
SS18-213ENST00000579640 PRO0461Q9UI25 63 aa6.42□□□□□ -1.38
SS18-213ENST00000579640 SMIM29Q86T20 159 aa6.41□□□□□ -1.38
SS18-213ENST00000579640 HERC2O95714 4834 aa6.41□□□□□ -1.38
SS18-213ENST00000579640 F8WEM9 126 aa6.41□□□□□ -1.38
SS18-213ENST00000579640 NDUFV3P56181 108 aaKnown RBP6.41□□□□□ -1.38
SS18-213ENST00000579640 MTURNQ8N3F0 131 aa6.41□□□□□ -1.38
SS18-213ENST00000579640 SRRM2Q9UQ35 2752 aaKnown RBP6.4□□□□□ -1.38
SS18-213ENST00000579640 CRYGAP11844 174 aa6.4□□□□□ -1.38
SS18-213ENST00000579640 LOC100996750A0A140TA64 210 aa6.39□□□□□ -1.39
SS18-213ENST00000579640 KRTAP4-6Q9BYQ5 205 aa6.39□□□□□ -1.39
SS18-213ENST00000579640 ANAPC11Q9NYG5 84 aa6.39□□□□□ -1.39
SS18-213ENST00000579640 SMCPP49901 116 aaPredicted RBP6.39□□□□□ -1.39
SS18-213ENST00000579640 C3orf22Q8N5N4 141 aa6.39□□□□□ -1.39
SS18-213ENST00000579640 JMJD7-PLA2G4BH0Y9G9 81 aa6.38□□□□□ -1.39
SS18-213ENST00000579640 IGLV8-61A0A075B6I0 122 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 IGLV9-49A0A0B4J1Y8 123 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 Q8NBF4 154 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 A0A087X002 238 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 RBM3P98179 157 aaKnown RBP6.36□□□□□ -1.39
SS18-213ENST00000579640 C9orf153Q5TBE3 101 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 KRTAP4-5Q9BYR2 181 aa6.36□□□□□ -1.39
SS18-213ENST00000579640 Q6JHZ5 121 aa6.35□□□□□ -1.39
SS18-213ENST00000579640 SSBP3-AS1Q7Z2R9 100 aa6.35□□□□□ -1.39
SS18-213ENST00000579640 OBSCN-AS1Q96MR7 158 aa6.35□□□□□ -1.39
SS18-213ENST00000579640 MOBPQ13875 183 aa6.34□□□□□ -1.39
SS18-213ENST00000579640 KRTAP13-2Q52LG2 175 aa6.34□□□□□ -1.39
SS18-213ENST00000579640 TEN1Q86WV5 123 aa6.34□□□□□ -1.4
SS18-213ENST00000579640 PRR26Q8N8Z3 221 aa6.34□□□□□ -1.4
SS18-213ENST00000579640 TYMSOSQ8TAI1 123 aa6.33□□□□□ -1.4
SS18-213ENST00000579640 DSCR8Q96T75 97 aa6.33□□□□□ -1.4
SS18-213ENST00000579640 C21orf62-AS1Q17RA5 79 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 TRBV7-4A0A0J9YYF1 115 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 A0A1B0GV72 72 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 OXTP01178 125 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 PDE6GP18545 87 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 ETDBQ3ZM63 59 aa6.32□□□□□ -1.4
SS18-213ENST00000579640 IGFL1Q6UW32 110 aa6.31□□□□□ -1.4
SS18-213ENST00000579640 LOC110117498A0A087WWA1 95 aa6.3□□□□□ -1.4
SS18-213ENST00000579640 C14orf132Q9NPU4 83 aa6.29□□□□□ -1.4
SS18-213ENST00000579640 LCE2BO14633 110 aa6.29□□□□□ -1.4
SS18-213ENST00000579640 KRTAP10-8P60410 259 aa6.29□□□□□ -1.4
SS18-213ENST00000579640 FLG2Q5D862 2391 aaPredicted RBP6.27□□□□□ -1.4
SS18-213ENST00000579640 KRTAP29-1A8MX34 341 aaPredicted RBP6.27□□□□□ -1.41
SS18-213ENST00000579640 CD164Q04900 197 aa6.27□□□□□ -1.41
SS18-213ENST00000579640 Q6Q795 121 aa6.27□□□□□ -1.41
SS18-213ENST00000579640 Q6ZQT0 140 aa6.27□□□□□ -1.41
SS18-213ENST00000579640 FAT3Q8TDW7 4589 aa6.26□□□□□ -1.41
SS18-213ENST00000579640 CCKP06307 115 aa6.26□□□□□ -1.41
SS18-213ENST00000579640 C4orf48Q5BLP8 95 aa6.26□□□□□ -1.41
SS18-213ENST00000579640 SPAG11AQ6PDA7 123 aa6.26□□□□□ -1.41
SS18-213ENST00000579640 LINC00304Q8N9R0 145 aa6.26□□□□□ -1.41
SS18-213ENST00000579640 A0A0G2JQZ4 141 aa6.25□□□□□ -1.41
SS18-213ENST00000579640 A0A1W2PNM2 257 aa6.25□□□□□ -1.41
SS18-213ENST00000579640 A0A1B0GW54 56 aa6.25□□□□□ -1.41
SS18-213ENST00000579640 SPINK1P00995 79 aa6.24□□□□□ -1.41
SS18-213ENST00000579640 VPS25Q9BRG1 176 aa6.24□□□□□ -1.41
SS18-213ENST00000579640 TRBV7-7A0A0K0K1E9 115 aa6.23□□□□□ -1.41
SS18-213ENST00000579640 MT1HL1P0DM35 61 aa6.23□□□□□ -1.41
SS18-213ENST00000579640 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
SS18-213ENST00000579640 LRP1Q07954 4544 aaKnown RBP6.23□□□□□ -1.41
SS18-213ENST00000579640 RPS29P62273 56 aaKnown RBP6.22□□□□□ -1.41
SS18-213ENST00000579640 HRCT1Q6UXD1 115 aa6.22□□□□□ -1.41
SS18-213ENST00000579640 TNXBP22105 4242 aa6.21□□□□□ -1.42
SS18-213ENST00000579640 LIMD2Q9BT23 127 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 PCLOQ9Y6V0 5065 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 MYCBP2O75592 4640 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 J3QR89 54 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 Q5XG85 94 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 SS18L2Q9UHA2 77 aa6.2□□□□□ -1.42
SS18-213ENST00000579640 DMBT1Q9UGM3 2413 aaPredicted RBP6.19□□□□□ -1.42
SS18-213ENST00000579640 A0A087WSZ3 146 aa6.19□□□□□ -1.42
SS18-213ENST00000579640 J3QL48 77 aa6.19□□□□□ -1.42
SS18-213ENST00000579640 ACYP1P07311 99 aa6.18□□□□□ -1.42
SS18-213ENST00000579640 FAM240AA0A1B0GVK7 77 aa6.17□□□□□ -1.42
SS18-213ENST00000579640 ASB16-AS1Q495Z4 193 aa6.16□□□□□ -1.42
SS18-213ENST00000579640 K7ERU9 68 aa6.14□□□□□ -1.43
SS18-213ENST00000579640 NREPQ16612 68 aa6.13□□□□□ -1.43
SS18-213ENST00000579640 LINC00846Q9NV44 126 aa6.13□□□□□ -1.43
SS18-213ENST00000579640 UBL5Q9BZL1 73 aa6.13□□□□□ -1.43
SS18-213ENST00000579640 Q6ZVQ6 151 aa6.11□□□□□ -1.43
SS18-213ENST00000579640 LINC00472Q9H8W2 130 aa6.1□□□□□ -1.43
SS18-213ENST00000579640 C1orf195Q5TG92 126 aa6.09□□□□□ -1.43
SS18-213ENST00000579640 J3KT08 172 aa6.09□□□□□ -1.44
SS18-213ENST00000579640 Q96NJ1 140 aa6.09□□□□□ -1.44
SS18-213ENST00000579640 FP248Q71RG6 208 aaPredicted RBP6.06□□□□□ -1.44
SS18-213ENST00000579640 BPY2O14599 106 aa6.06□□□□□ -1.44
SS18-213ENST00000579640 IGKV4-1P06312 121 aa6.06□□□□□ -1.44
SS18-213ENST00000579640 SIGMAR1Q99720 223 aa6.06□□□□□ -1.44
SS18-213ENST00000579640 RETNLBQ9BQ08 111 aa6.05□□□□□ -1.44
SS18-213ENST00000579640 DEFB116Q30KQ4 102 aa6.04□□□□□ -1.44
SS18-213ENST00000579640 LINC00643Q86TS7 51 aa6.04□□□□□ -1.44
SS18-213ENST00000579640 ATP5EP2Q5VTU8 51 aa6.04□□□□□ -1.44
SS18-213ENST00000579640 CXCL6P80162 114 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms