RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR13C6PQ8NH95 151 aa7.32□□□□□ -1.24
VPS53-218ENST00000575207 EIF4EBP3O60516 100 aaPredicted RBP7.31□□□□□ -1.24
VPS53-218ENST00000575207 KRTAP19-8Q3LI54 63 aa7.31□□□□□ -1.24
VPS53-218ENST00000575207 SOSTDC1Q6X4U4 206 aa7.31□□□□□ -1.24
VPS53-218ENST00000575207 F8WEM9 126 aa7.3□□□□□ -1.24
VPS53-218ENST00000575207 URB1-AS1Q96HZ7 61 aa7.3□□□□□ -1.24
VPS53-218ENST00000575207 HSBP1O75506 76 aa7.29□□□□□ -1.24
VPS53-218ENST00000575207 DSCR10P59022 87 aa7.29□□□□□ -1.24
VPS53-218ENST00000575207 NPC2P61916 151 aa7.29□□□□□ -1.24
VPS53-218ENST00000575207 CLEC2BQ92478 149 aa7.29□□□□□ -1.24
VPS53-218ENST00000575207 CHCHD1Q96BP2 118 aaKnown RBP7.29□□□□□ -1.24
VPS53-218ENST00000575207 IFI27L1Q96BM0 104 aa7.27□□□□□ -1.25
VPS53-218ENST00000575207 H0Y8G0 127 aa7.26□□□□□ -1.25
VPS53-218ENST00000575207 TSPEAR-AS2P59090 65 aa7.26□□□□□ -1.25
VPS53-218ENST00000575207 Q6JHZ5 121 aa7.26□□□□□ -1.25
VPS53-218ENST00000575207 TRAV12-1A0A0B4J245 112 aa7.25□□□□□ -1.25
VPS53-218ENST00000575207 KRTAP4-9Q9BYQ8 210 aa7.25□□□□□ -1.25
VPS53-218ENST00000575207 SPANXDQ9BXN6 97 aa7.23□□□□□ -1.25
VPS53-218ENST00000575207 AHNAK2Q8IVF2 5795 aa7.23□□□□□ -1.25
VPS53-218ENST00000575207 TRBV7-6A0A0J9YX20 115 aa7.21□□□□□ -1.26
VPS53-218ENST00000575207 A0A1W2PNM2 257 aa7.21□□□□□ -1.26
VPS53-218ENST00000575207 FAM218AQ96MZ4 157 aa7.21□□□□□ -1.26
VPS53-218ENST00000575207 ZNF815PA8K554 130 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 LEPROTL1O95214 131 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 HERVK_113P61574 105 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 KRTAP8-1Q8IUC2 63 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 SPANXCQ9NY87 97 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 HMCN1Q96RW7 5635 aa7.2□□□□□ -1.26
VPS53-218ENST00000575207 A0A1B0GWB2 263 aa7.18□□□□□ -1.26
VPS53-218ENST00000575207 ADAMTSL4-AS1Q5T5F5 129 aa7.18□□□□□ -1.26
VPS53-218ENST00000575207 HSPB8Q9UJY1 196 aa7.18□□□□□ -1.26
VPS53-218ENST00000575207 LEPROTO15243 131 aa7.17□□□□□ -1.26
VPS53-218ENST00000575207 TRGC2P03986 189 aa7.17□□□□□ -1.26
VPS53-218ENST00000575207 PLNP26678 52 aa7.17□□□□□ -1.26
VPS53-218ENST00000575207 NMUP48645 174 aa7.17□□□□□ -1.26
VPS53-218ENST00000575207 YPEL4Q96NS1 127 aa7.17□□□□□ -1.26
VPS53-218ENST00000575207 SERF1AO75920 110 aa7.16□□□□□ -1.26
VPS53-218ENST00000575207 FABP4P15090 132 aa7.16□□□□□ -1.26
VPS53-218ENST00000575207 SS18L2Q9UHA2 77 aa7.16□□□□□ -1.26
VPS53-218ENST00000575207 J3QQQ9 107 aa7.15□□□□□ -1.26
VPS53-218ENST00000575207 DPM2O94777 84 aa7.15□□□□□ -1.26
VPS53-218ENST00000575207 SPINK7P58062 85 aa7.15□□□□□ -1.26
VPS53-218ENST00000575207 LINC00313P59037 77 aa7.15□□□□□ -1.26
VPS53-218ENST00000575207 SPRR2GQ9BYE4 73 aa7.15□□□□□ -1.26
VPS53-218ENST00000575207 TRAV13-2A0A0B4J235 113 aa7.14□□□□□ -1.27
VPS53-218ENST00000575207 LINC00518Q8N0U6 118 aa7.14□□□□□ -1.27
VPS53-218ENST00000575207 IMUPQ9GZP8 106 aa7.14□□□□□ -1.27
VPS53-218ENST00000575207 IGKCP01834 107 aa7.13□□□□□ -1.27
VPS53-218ENST00000575207 ANKRD39Q53RE8 183 aa7.12□□□□□ -1.27
VPS53-218ENST00000575207 PMCHL2Q9BQD1 86 aa7.12□□□□□ -1.27
VPS53-218ENST00000575207 COLCA2A8K830 154 aa7.11□□□□□ -1.27
VPS53-218ENST00000575207 KRTAP5-10Q6L8G5 202 aa7.11□□□□□ -1.27
VPS53-218ENST00000575207 WFDC13Q8IUB5 93 aa7.11□□□□□ -1.27
VPS53-218ENST00000575207 NHP2Q9NX24 153 aaKnown RBP7.11□□□□□ -1.27
VPS53-218ENST00000575207 OCIAD2Q56VL3 154 aa7.1□□□□□ -1.27
VPS53-218ENST00000575207 LINC00308Q8TCZ7 52 aa7.1□□□□□ -1.27
VPS53-218ENST00000575207 A0A0J9YXY3 114 aa7.08□□□□□ -1.28
VPS53-218ENST00000575207 A4D1N5 150 aa7.08□□□□□ -1.28
VPS53-218ENST00000575207 SLC7A5P1Q8MH63 180 aa7.08□□□□□ -1.28
VPS53-218ENST00000575207 SIGMAR1Q99720 223 aa7.07□□□□□ -1.28
VPS53-218ENST00000575207 LINC00310P59036 64 aa7.06□□□□□ -1.28
VPS53-218ENST00000575207 FAM236AA0A1B0GUQ0 79 aa7.03□□□□□ -1.28
VPS53-218ENST00000575207 FAM236BA0A1B0GV22 79 aa7.03□□□□□ -1.28
VPS53-218ENST00000575207 E9PLD3 99 aa7.03□□□□□ -1.28
VPS53-218ENST00000575207 SYS1-DBNDD2H3BUS1 97 aa7.02□□□□□ -1.29
VPS53-218ENST00000575207 H1FX-AS1Q4G0G2 97 aa7□□□□□ -1.29
VPS53-218ENST00000575207 KRTAP5-7Q6L8G8 165 aa7□□□□□ -1.29
VPS53-218ENST00000575207 LITAFQ99732 161 aa7□□□□□ -1.29
VPS53-218ENST00000575207 ZCCHC13Q8WW36 166 aaKnown RBP6.99□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BKO60814 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BJP06899 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BOP23527 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BBP33778 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BDP58876 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BCP62807 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST2H2BEQ16778 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.98□□□□□ -1.29
VPS53-218ENST00000575207 PET117Q6UWS5 81 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BHQ93079 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BNQ99877 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 HIST1H2BMQ99879 126 aa6.98□□□□□ -1.29
VPS53-218ENST00000575207 A0A087WSZ3 146 aa6.97□□□□□ -1.29
VPS53-218ENST00000575207 H3BUT2 72 aa6.97□□□□□ -1.29
VPS53-218ENST00000575207 TIMM17BO60830 172 aa6.97□□□□□ -1.29
VPS53-218ENST00000575207 SCGB1D4Q6XE38 83 aa6.97□□□□□ -1.29
VPS53-218ENST00000575207 Q6ZQY7 126 aa6.97□□□□□ -1.29
VPS53-218ENST00000575207 KRTDAPP60985 99 aa6.96□□□□□ -1.3
VPS53-218ENST00000575207 LCE1DQ5T752 114 aa6.96□□□□□ -1.3
VPS53-218ENST00000575207 COPS9Q8WXC6 57 aa6.96□□□□□ -1.3
VPS53-218ENST00000575207 LINC01545Q5VT33 79 aa6.95□□□□□ -1.3
VPS53-218ENST00000575207 A6NDN8 102 aa6.94□□□□□ -1.3
VPS53-218ENST00000575207 SCGB1D1O95968 90 aa6.94□□□□□ -1.3
VPS53-218ENST00000575207 TEN1Q86WV5 123 aa6.94□□□□□ -1.3
VPS53-218ENST00000575207 C3orf79P0CE67 100 aa6.92□□□□□ -1.3
VPS53-218ENST00000575207 IGKV4-1P06312 121 aa6.91□□□□□ -1.3
VPS53-218ENST00000575207 TTTY13Q9BZ97 58 aa6.9□□□□□ -1.3
VPS53-218ENST00000575207 SNHG12Q9BXW3 62 aa6.89□□□□□ -1.31
VPS53-218ENST00000575207 LINC00575Q6W349 94 aa6.88□□□□□ -1.31
VPS53-218ENST00000575207 IGHV6-1A0A0B4J1U7 121 aa6.87□□□□□ -1.31
VPS53-218ENST00000575207 SMIM11BQ8TCY0 68 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms