RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PPDPFLQ8WWR9 84 aa10.08□□□□□ -0.8
NUP88-210ENST00000574867 DNAL4O96015 105 aa10.07□□□□□ -0.8
NUP88-210ENST00000574867 NAA38Q9BRA0 125 aaKnown RBP10.07□□□□□ -0.8
NUP88-210ENST00000574867 LAMTOR3Q9UHA4 124 aa10.07□□□□□ -0.8
NUP88-210ENST00000574867 K7ERU9 68 aa10.06□□□□□ -0.8
NUP88-210ENST00000574867 GHRHP01286 108 aa10.06□□□□□ -0.8
NUP88-210ENST00000574867 Q8N377 158 aa10.06□□□□□ -0.8
NUP88-210ENST00000574867 C3orf22Q8N5N4 141 aa10.06□□□□□ -0.8
NUP88-210ENST00000574867 C9orf118A6NHY6 69 aa10.05□□□□□ -0.8
NUP88-210ENST00000574867 H3BUT2 72 aa10.05□□□□□ -0.8
NUP88-210ENST00000574867 LST1O00453 97 aa10.05□□□□□ -0.8
NUP88-210ENST00000574867 DMBT1Q9UGM3 2413 aaPredicted RBP10.05□□□□□ -0.8
NUP88-210ENST00000574867 TRACP01848 142 aa10.05□□□□□ -0.8
NUP88-210ENST00000574867 IGLV9-49A0A0B4J1Y8 123 aa10.04□□□□□ -0.8
NUP88-210ENST00000574867 MOBPQ13875 183 aa10.03□□□□□ -0.8
NUP88-210ENST00000574867 TNXBP22105 4242 aa10.03□□□□□ -0.8
NUP88-210ENST00000574867 C9orf153Q5TBE3 101 aa10.02□□□□□ -0.81
NUP88-210ENST00000574867 SMIM29Q86T20 159 aa10.02□□□□□ -0.81
NUP88-210ENST00000574867 Q8NBF4 154 aa10.02□□□□□ -0.81
NUP88-210ENST00000574867 ATXN8Q156A1 80 aa10.02□□□□□ -0.81
NUP88-210ENST00000574867 H3BQ85 93 aa10.01□□□□□ -0.81
NUP88-210ENST00000574867 SSBP3-AS1Q7Z2R9 100 aa10.01□□□□□ -0.81
NUP88-210ENST00000574867 TRBV20-1A0A075B6N2 111 aa10□□□□□ -0.81
NUP88-210ENST00000574867 ORMDL1Q9P0S3 153 aa10□□□□□ -0.81
NUP88-210ENST00000574867 A0A1W2PPM0 123 aa10□□□□□ -0.81
NUP88-210ENST00000574867 TCL1BO95988 128 aa10□□□□□ -0.81
NUP88-210ENST00000574867 F8WEM9 126 aa9.99□□□□□ -0.81
NUP88-210ENST00000574867 GTF2H5Q6ZYL4 71 aa9.99□□□□□ -0.81
NUP88-210ENST00000574867 FABP2P12104 132 aa9.98□□□□□ -0.81
NUP88-210ENST00000574867 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
NUP88-210ENST00000574867 TMEM256-PLSCR3K7ERE1 68 aa9.95□□□□□ -0.82
NUP88-210ENST00000574867 SPAG11AQ6PDA7 123 aa9.94□□□□□ -0.82
NUP88-210ENST00000574867 K7EP34 96 aa9.94□□□□□ -0.82
NUP88-210ENST00000574867 IGLV8-61A0A075B6I0 122 aa9.93□□□□□ -0.82
NUP88-210ENST00000574867 NDUFV3P56181 108 aaKnown RBP9.93□□□□□ -0.82
NUP88-210ENST00000574867 C4orf48Q5BLP8 95 aa9.93□□□□□ -0.82
NUP88-210ENST00000574867 Q6JHZ5 121 aa9.91□□□□□ -0.82
NUP88-210ENST00000574867 SPCS1Q9Y6A9 102 aa9.89□□□□□ -0.83
NUP88-210ENST00000574867 SPINK1P00995 79 aa9.89□□□□□ -0.83
NUP88-210ENST00000574867 BAALC-AS2P0C853 105 aa9.88□□□□□ -0.83
NUP88-210ENST00000574867 H3BMG7 143 aa9.87□□□□□ -0.83
NUP88-210ENST00000574867 CD164Q04900 197 aa9.87□□□□□ -0.83
NUP88-210ENST00000574867 C9JAW5 83 aa9.86□□□□□ -0.83
NUP88-210ENST00000574867 RPS29P62273 56 aaKnown RBP9.86□□□□□ -0.83
NUP88-210ENST00000574867 IGFL1Q6UW32 110 aa9.85□□□□□ -0.83
NUP88-210ENST00000574867 ANKRD29Q8N6D5 301 aa9.85□□□□□ -0.83
NUP88-210ENST00000574867 H3BT86 120 aa9.82□□□□□ -0.84
NUP88-210ENST00000574867 A0A0G2JQZ4 141 aa9.81□□□□□ -0.84
NUP88-210ENST00000574867 HRCT1Q6UXD1 115 aa9.81□□□□□ -0.84
NUP88-210ENST00000574867 HERC1Q15751 4861 aa9.8□□□□□ -0.84
NUP88-210ENST00000574867 LIMD2Q9BT23 127 aa9.8□□□□□ -0.84
NUP88-210ENST00000574867 A0A1B0GV72 72 aa9.79□□□□□ -0.84
NUP88-210ENST00000574867 JMJD7-PLA2G4BH0Y9G9 81 aa9.78□□□□□ -0.84
NUP88-210ENST00000574867 SCGB1A1P11684 91 aa9.78□□□□□ -0.84
NUP88-210ENST00000574867 RBM3P98179 157 aaKnown RBP9.78□□□□□ -0.84
NUP88-210ENST00000574867 Q6Q795 121 aa9.77□□□□□ -0.85
NUP88-210ENST00000574867 MTURNQ8N3F0 131 aa9.76□□□□□ -0.85
NUP88-210ENST00000574867 J3QR89 54 aa9.76□□□□□ -0.85
NUP88-210ENST00000574867 TEN1Q86WV5 123 aa9.76□□□□□ -0.85
NUP88-210ENST00000574867 TRBV7-7A0A0K0K1E9 115 aa9.75□□□□□ -0.85
NUP88-210ENST00000574867 Q5XG85 94 aa9.75□□□□□ -0.85
NUP88-210ENST00000574867 DSCR8Q96T75 97 aa9.75□□□□□ -0.85
NUP88-210ENST00000574867 TRBV7-4A0A0J9YYF1 115 aa9.75□□□□□ -0.85
NUP88-210ENST00000574867 SIGMAR1Q99720 223 aa9.75□□□□□ -0.85
NUP88-210ENST00000574867 F8W1H4 67 aa9.73□□□□□ -0.85
NUP88-210ENST00000574867 OBSCN-AS1Q96MR7 158 aa9.71□□□□□ -0.85
NUP88-210ENST00000574867 RETNLBQ9BQ08 111 aa9.71□□□□□ -0.86
NUP88-210ENST00000574867 PRO0461Q9UI25 63 aa9.71□□□□□ -0.86
NUP88-210ENST00000574867 A0A1W2PNM2 257 aa9.7□□□□□ -0.86
NUP88-210ENST00000574867 CCKP06307 115 aa9.7□□□□□ -0.86
NUP88-210ENST00000574867 PDE6GP18545 87 aa9.69□□□□□ -0.86
NUP88-210ENST00000574867 SMCPP49901 116 aaPredicted RBP9.69□□□□□ -0.86
NUP88-210ENST00000574867 LOC110117498A0A087WWA1 95 aa9.68□□□□□ -0.86
NUP88-210ENST00000574867 PRR4Q16378 134 aa9.68□□□□□ -0.86
NUP88-210ENST00000574867 FP248Q71RG6 208 aaPredicted RBP9.68□□□□□ -0.86
NUP88-210ENST00000574867 SS18L2Q9UHA2 77 aa9.68□□□□□ -0.86
NUP88-210ENST00000574867 ASB16-AS1Q495Z4 193 aa9.67□□□□□ -0.86
NUP88-210ENST00000574867 C14orf132Q9NPU4 83 aa9.67□□□□□ -0.86
NUP88-210ENST00000574867 A0A087WSZ3 146 aa9.66□□□□□ -0.86
NUP88-210ENST00000574867 ETDBQ3ZM63 59 aa9.66□□□□□ -0.86
NUP88-210ENST00000574867 Q6ZQT0 140 aa9.65□□□□□ -0.86
NUP88-210ENST00000574867 HMCN2Q8NDA2 5059 aa9.63□□□□□ -0.87
NUP88-210ENST00000574867 A0A1B0GW54 56 aa9.62□□□□□ -0.87
NUP88-210ENST00000574867 C1orf195Q5TG92 126 aa9.62□□□□□ -0.87
NUP88-210ENST00000574867 IGLV7-46A0A075B6I9 117 aa9.61□□□□□ -0.87
NUP88-210ENST00000574867 SVIPQ8NHG7 77 aa9.57□□□□□ -0.88
NUP88-210ENST00000574867 TPRXLQ17RH7 258 aa9.55□□□□□ -0.88
NUP88-210ENST00000574867 CDIP1Q9H305 208 aa9.52□□□□□ -0.88
NUP88-210ENST00000574867 Q96NJ1 140 aa9.52□□□□□ -0.89
NUP88-210ENST00000574867 KRTAP13-3Q3SY46 172 aa9.5□□□□□ -0.89
NUP88-210ENST00000574867 LINC00472Q9H8W2 130 aa9.49□□□□□ -0.89
NUP88-210ENST00000574867 MT-ATP8P03928 68 aa9.48□□□□□ -0.89
NUP88-210ENST00000574867 IGKV4-1P06312 121 aa9.44□□□□□ -0.9
NUP88-210ENST00000574867 NREPQ16612 68 aa9.44□□□□□ -0.9
NUP88-210ENST00000574867 J3KT08 172 aa9.43□□□□□ -0.9
NUP88-210ENST00000574867 LPAP08519 4548 aa9.42□□□□□ -0.9
NUP88-210ENST00000574867 DEFB116Q30KQ4 102 aa9.41□□□□□ -0.9
NUP88-210ENST00000574867 ANAPC13Q9BS18 74 aa9.41□□□□□ -0.9
NUP88-210ENST00000574867 LRP2P98164 4655 aa9.41□□□□□ -0.9
NUP88-210ENST00000574867 C9orf92A6NGG3 77 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms