RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 LINC00518Q8N0U6 118 aa6.15□□□□□ -1.42
CCDC40-208ENST00000572270 PLNP26678 52 aa6.14□□□□□ -1.43
CCDC40-208ENST00000572270 TRAV13-2A0A0B4J235 113 aa6.13□□□□□ -1.43
CCDC40-208ENST00000572270 A4D1N5 150 aa6.13□□□□□ -1.43
CCDC40-208ENST00000572270 SLC7A5P1Q8MH63 180 aa6.13□□□□□ -1.43
CCDC40-208ENST00000572270 SS18L2Q9UHA2 77 aa6.13□□□□□ -1.43
CCDC40-208ENST00000572270 TRAPPC1Q9Y5R8 145 aa6.13□□□□□ -1.43
CCDC40-208ENST00000572270 KRTAP2-2Q9BYT5 123 aa6.12□□□□□ -1.43
CCDC40-208ENST00000572270 KRTAP2-1Q9BYU5 128 aa6.12□□□□□ -1.43
CCDC40-208ENST00000572270 CHCHD1Q96BP2 118 aaKnown RBP6.1□□□□□ -1.43
CCDC40-208ENST00000572270 DPM2O94777 84 aa6.08□□□□□ -1.44
CCDC40-208ENST00000572270 OCIAD2Q56VL3 154 aa6.07□□□□□ -1.44
CCDC40-208ENST00000572270 LITAFQ99732 161 aa6.07□□□□□ -1.44
CCDC40-208ENST00000572270 TIMM17BO60830 172 aa6.06□□□□□ -1.44
CCDC40-208ENST00000572270 LINC00313P59037 77 aa6.06□□□□□ -1.44
CCDC40-208ENST00000572270 ANKRD39Q53RE8 183 aa6.06□□□□□ -1.44
CCDC40-208ENST00000572270 A6NDN8 102 aa6.05□□□□□ -1.44
CCDC40-208ENST00000572270 IGKCP01834 107 aa6.05□□□□□ -1.44
CCDC40-208ENST00000572270 SPRR2EP22531 72 aa6.05□□□□□ -1.44
CCDC40-208ENST00000572270 SPRR2BP35325 72 aa6.05□□□□□ -1.44
CCDC40-208ENST00000572270 SPRR2AP35326 72 aa6.05□□□□□ -1.44
CCDC40-208ENST00000572270 HSBP1O75506 76 aa6.04□□□□□ -1.44
CCDC40-208ENST00000572270 SERF1AO75920 110 aa6.04□□□□□ -1.44
CCDC40-208ENST00000572270 SIGMAR1Q99720 223 aa6.04□□□□□ -1.44
CCDC40-208ENST00000572270 COLCA2A8K830 154 aa6.03□□□□□ -1.44
CCDC40-208ENST00000572270 PMCHL2Q9BQD1 86 aa6.03□□□□□ -1.44
CCDC40-208ENST00000572270 E9PLD3 99 aa6.02□□□□□ -1.45
CCDC40-208ENST00000572270 Q6ZQY7 126 aa6.02□□□□□ -1.45
CCDC40-208ENST00000572270 LEPROTL1O95214 131 aa6.01□□□□□ -1.45
CCDC40-208ENST00000572270 SCGB1D1O95968 90 aa6.01□□□□□ -1.45
CCDC40-208ENST00000572270 KRTAP10-5P60370 271 aa6□□□□□ -1.45
CCDC40-208ENST00000572270 H3BUT2 72 aa5.99□□□□□ -1.45
CCDC40-208ENST00000572270 Q5VV11 94 aa5.99□□□□□ -1.45
CCDC40-208ENST00000572270 A0A1W2PNM2 257 aa5.98□□□□□ -1.45
CCDC40-208ENST00000572270 SPINK7P58062 85 aa5.98□□□□□ -1.45
CCDC40-208ENST00000572270 VAMP3Q15836 100 aa5.98□□□□□ -1.45
CCDC40-208ENST00000572270 A0A087WSZ3 146 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 hADV29S1A0JD25 119 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 TMEM218A2RU14 115 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 MT1BP07438 61 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 SMIM11BQ8TCY0 68 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 COPS9Q8WXC6 57 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 FAM218AQ96MZ4 157 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 SPRR2FQ96RM1 72 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 SNHG12Q9BXW3 62 aa5.97□□□□□ -1.45
CCDC40-208ENST00000572270 LINC00575Q6W349 94 aa5.96□□□□□ -1.46
CCDC40-208ENST00000572270 TEN1Q86WV5 123 aa5.96□□□□□ -1.46
CCDC40-208ENST00000572270 WFDC13Q8IUB5 93 aa5.95□□□□□ -1.46
CCDC40-208ENST00000572270 HSPB8Q9UJY1 196 aa5.95□□□□□ -1.46
CCDC40-208ENST00000572270 PPDPFLQ8WWR9 84 aa5.94□□□□□ -1.46
CCDC40-208ENST00000572270 UQCC3Q6UW78 93 aa5.93□□□□□ -1.46
CCDC40-208ENST00000572270 IGKV4-1P06312 121 aa5.91□□□□□ -1.46
CCDC40-208ENST00000572270 FABP4P15090 132 aa5.91□□□□□ -1.46
CCDC40-208ENST00000572270 IFITM1P13164 125 aa5.9□□□□□ -1.46
CCDC40-208ENST00000572270 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.9□□□□□ -1.46
CCDC40-208ENST00000572270 ZCCHC13Q8WW36 166 aaKnown RBP5.9□□□□□ -1.46
CCDC40-208ENST00000572270 SCGB1D4Q6XE38 83 aa5.89□□□□□ -1.47
CCDC40-208ENST00000572270 GPR98Q8WXG9 6306 aa5.88□□□□□ -1.47
CCDC40-208ENST00000572270 IGHV6-1A0A0B4J1U7 121 aa5.87□□□□□ -1.47
CCDC40-208ENST00000572270 TTTY13Q9BZ97 58 aa5.87□□□□□ -1.47
CCDC40-208ENST00000572270 SPRR2DP22532 72 aa5.86□□□□□ -1.47
CCDC40-208ENST00000572270 KRTAP19-8Q3LI54 63 aa5.86□□□□□ -1.47
CCDC40-208ENST00000572270 CLLU1Q5K131 121 aa5.86□□□□□ -1.47
CCDC40-208ENST00000572270 IMUPQ9GZP8 106 aa5.86□□□□□ -1.47
CCDC40-208ENST00000572270 FAM236AA0A1B0GUQ0 79 aa5.85□□□□□ -1.47
CCDC40-208ENST00000572270 FAM236BA0A1B0GV22 79 aa5.85□□□□□ -1.47
CCDC40-208ENST00000572270 H1FX-AS1Q4G0G2 97 aa5.85□□□□□ -1.47
CCDC40-208ENST00000572270 MUSTN1Q8IVN3 82 aa5.84□□□□□ -1.47
CCDC40-208ENST00000572270 C3orf79P0CE67 100 aa5.83□□□□□ -1.48
CCDC40-208ENST00000572270 LCE1AQ5T7P2 110 aa5.83□□□□□ -1.48
CCDC40-208ENST00000572270 C12orf57Q99622 126 aa5.82□□□□□ -1.48
CCDC40-208ENST00000572270 LINC00310P59036 64 aa5.81□□□□□ -1.48
CCDC40-208ENST00000572270 C8orf87E5RJ46 101 aa5.8□□□□□ -1.48
CCDC40-208ENST00000572270 DEFB116Q30KQ4 102 aa5.79□□□□□ -1.48
CCDC40-208ENST00000572270 NDUFV3P56181 108 aaKnown RBP5.78□□□□□ -1.48
CCDC40-208ENST00000572270 SPRR2GQ9BYE4 73 aa5.78□□□□□ -1.48
CCDC40-208ENST00000572270 TRGC2P03986 189 aa5.76□□□□□ -1.49
CCDC40-208ENST00000572270 BVES-AS1Q5T3Y7 98 aa5.76□□□□□ -1.49
CCDC40-208ENST00000572270 LYRM7Q5U5X0 104 aa5.76□□□□□ -1.49
CCDC40-208ENST00000572270 H3BMG7 143 aa5.75□□□□□ -1.49
CCDC40-208ENST00000572270 SYS1-DBNDD2H3BUS1 97 aa5.75□□□□□ -1.49
CCDC40-208ENST00000572270 LCE3BQ5TA77 95 aa5.74□□□□□ -1.49
CCDC40-208ENST00000572270 RAB37Q96AX2 223 aa5.74□□□□□ -1.49
CCDC40-208ENST00000572270 DSCR8Q96T75 97 aa5.74□□□□□ -1.49
CCDC40-208ENST00000572270 A0A1B0GVX0 72 aa5.73□□□□□ -1.49
CCDC40-208ENST00000572270 SNCGO76070 127 aa5.72□□□□□ -1.49
CCDC40-208ENST00000572270 LINC01545Q5VT33 79 aa5.72□□□□□ -1.49
CCDC40-208ENST00000572270 KRTAP8-1Q8IUC2 63 aa5.72□□□□□ -1.49
CCDC40-208ENST00000572270 LINC00472Q9H8W2 130 aa5.72□□□□□ -1.49
CCDC40-208ENST00000572270 TRBV7-4A0A0J9YYF1 115 aa5.7□□□□□ -1.5
CCDC40-208ENST00000572270 YPEL4Q96NS1 127 aa5.7□□□□□ -1.5
CCDC40-208ENST00000572270 SNAPINO95295 136 aa5.69□□□□□ -1.5
CCDC40-208ENST00000572270 APOC3P02656 99 aa5.69□□□□□ -1.5
CCDC40-208ENST00000572270 PET117Q6UWS5 81 aa5.67□□□□□ -1.5
CCDC40-208ENST00000572270 IGKV3D-7A0A0C4DH55 119 aa5.66□□□□□ -1.5
CCDC40-208ENST00000572270 SVBPQ8N300 66 aa5.66□□□□□ -1.5
CCDC40-208ENST00000572270 FABP2P12104 132 aa5.65□□□□□ -1.5
CCDC40-208ENST00000572270 NDUFA5Q16718 116 aa5.65□□□□□ -1.5
CCDC40-208ENST00000572270 C5orf47Q569G3 176 aa5.65□□□□□ -1.5
CCDC40-208ENST00000572270 ANKRD29Q8N6D5 301 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms